mRNA_H-akashiwo_Contig1.159.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.159.1
Unique NamemRNA_H-akashiwo_Contig1.159.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:6695184..6700807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size229
Hectar predicted targeting categoryother localisation
Exons2
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387031.3462644-CDS-H-akashiwo_Contig1:6695183..66953051681387031.3462644-CDS-H-akashiwo_Contig1:6695183..6695305Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 6695184..6695305 -
1681387031.3904696-CDS-H-akashiwo_Contig1:6700701..67008071681387031.3904696-CDS-H-akashiwo_Contig1:6700701..6700807Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 6700702..6700807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.159.1prot_H-akashiwo_Contig1.159.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 6695184..6700807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.159.1

>prot_H-akashiwo_Contig1.159.1 ID=prot_H-akashiwo_Contig1.159.1|Name=mRNA_H-akashiwo_Contig1.159.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=76bp
GGGRGPGPVPPRRRSSRGGGRRSRRHCRRGGGSGTGGYECWWDPGRPVPA
PPARRRPRRRPRQHGERGGGEEMKNY
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mRNA from alignment at H-akashiwo_Contig1:6695184..6700807-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.159.1 ID=mRNA_H-akashiwo_Contig1.159.1|Name=mRNA_H-akashiwo_Contig1.159.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=5624bp|location=Sequence derived from alignment at H-akashiwo_Contig1:6695184..6700807- (Heterosigma akashiwo CCMP452)
GGCGGCGGGCGGGGGCCGGGGCCGGTCCCCCCCCGCCGGCGGAGCAGCAG
AGGAGGGGGGCGCCGCAGCCGCCGCCACTGCCGCCGCGGTGGTGGAAGCG
GAACCGGTGGGCGGGGCTTGGGGGAGTGCTTACACATCGTGTTGGCAGAT
AAAAGGTTGCCCAACAACAACACCTTTTTTTTTTTTTTTTTAATATACGT
TCTCATGCCTTGTCACATCCTGAGGAAGGTCCTCACGCCAGCCGACCGTC
ATGCAGAGCCATCTCTGAGCTTGTCGATGTGATCCTTGTAGTGATTAGCG
CTCGTATCATCGCGCCTTCCAATGCTCGCGGACATCTCTCTGATGCACCT
CGGGCCACCATCCTTCGCTGACGACCTCCTTCTATTACCGCTCTGTCAGG
TCGTTGTACCCTTCTGTAAGTCGCCCACTCCTGGAGCTTCCGACTCCTCG
CCAGCCTCGTCACTGCTCCAGATCGCCATCGCTCTGCTTTCGTGCCGTTT
CCATGGGCTGCAGCAAAGCTCTTTATGAACTCCGCGTACAGTTTCGACAA
ACTCCTGTTGGCAATAAGTGTGAGAACGGAAGGGAGGAGGGTTAAATATC
AAAGCGATATACATATTATACTTCGTGAATTGACTGTATATATACTTTAT
TTATTTTCCCAGCTCATCTTCTTCTTCTCTCTTCATCATCATCATCATCT
TCTTTTTCTATGTTCATCATTGGTGTACATGGTCATCACCATCTTCACAT
GGCTTCTTTAGTAAGCCTCATATCTAACGATATCTTAAACCTTTGCATAT
AGTTATCAACTACTTATCAGTCAAAGCATGGTTCTCACTGGTTCACAAAA
CCAAGAAGGCAACTCAATCTTTACTGTGAGTTGCCTATCTGTTGGTTATG
GGCAATTGGCGCATGCCATCCTCTCTCTCTGGTTCTCTCTGCTGGCCATT
CCCTCGTGGCTCCTCTCGACGCTGCTGCCCCCTCTTTTGGGTGGCTGTGC
CATCGCGGTCACCGTGGCCGCCACGGCGGTTCTACTCGGGTCCTCCTCGT
CTTCGGTCTCCCTTGATTCTACGGCGTGCTACCTGGACACTGGCTGTACG
TCTGTTATGACGAACAACTCGGCCTTGCTCTTCGGTGCTGCGCCGGTGAA
CGTGCCCATCACGACTGGGAATCTGGGGACTTCGACGCTGGCTTCTCTTC
GCGGCACCTCGACCTTCAAATCGGTGAGCACGGGGCGTTCCTTTCCTTTC
ACTCAGTCCCTGTATTGTGCGCAGCTTCCGTGTACTTTGGTGCCGTTAAC
TGCCATGAAACGGGCTGGGCTGAAGTCCATTTTGGACGAGGACGCTCTCG
TGTTTCGTTTCTATCGTCGCCACGTGCTTCAATTTACAGCCGAGGTACAC
GACACCGGTCTTTATCGTCTCGACTGGGAGCCCCTTCTATCCCCCTCCTC
TCCTCCACCGTCCGATCCTCCTTCTTTCTCCGACGGTGGCGTTCCTGACC
ACTCTGAGTCTGCCTTAGTCGCTGATGCCAGAGTGGATAACACCATGTCT
CTCTGGCACCACCGTCGTTCTCACTGCTCAGAATCTTTGATTCGTCAAAT
GGTCAGTGACGGTAGGATCCTTCGCCATCTCATTAATCTCAGCCACTCCT
TGCCTTTCTACCATAGCTGTGCCACGAATTCGATCTGTAAGGCTGGTCCG
ATCAAAAATGGAGCTCCCTGTGATGATCAAACCTCTCCAGTTGTCTCTCG
TATTCTGGAAGAGGTGTCGGTGGACGTTTCTGGACCGTATCCTTCGGACC
GTTCCGGCAATCGCTGGTTCGTTTTCTTCGTTGATCGTAAGTCCCGCTTT
AGATAGGTAGGACTTATGCGCAACAAGAACGACACCATGAAGCATTTTCT
CTCCTTCTGCGAATCAGCTACTCGGCAACACCCCGATATCTCTATCGATG
ATCTCGCCTCTATTCGTATGGATGGAGGTGATAAAGGTGGAGAATTTTCA
CAAATTCGGGATTATGCCGATCTTCACGGGATTCGGGTTCTGCCTACGGG
GAGGTCCAATCCTCACGGCAATGCCTTAGCTGAGACCTCCATTAATGTTG
TGTGTCAAAAGATGCGCGCTTCTCTTCATGCAAGTCAACTCTCTGATTCT
TATTTGTCTGAAGTTCTTCTTCACTCTGTTGAAACAGCCAATCGTCTGCC
AACAACTGGTCTTCCCAATCACAACTCTCCCTACGAATCGTTGTATGGTC
ATCGACCTTCTCTACGACATTTGCGCACTTTTGGATCTTCCTGTTTCGCT
TACGAACCTCAAGTACGTAGATCAGGAAAACTGTCTCCCTAAGGCGTTCA
TCACAAATTCCTGTCCTATGGTTCTAGTACAGGGGTGTACCGCCTCTTGT
CACCAAAGAACAGGATTGTGTTTATACCAAGTTCGTTCTTTTCGATGAAA
CGTCAGTAGTTCCTTCTTCTCCTGGATCTTCTCTTTCTGATGACGTTTCC
ACTTCTGATGACGTTTCCACTCACTCAGCCAATTCCTCTTTTACTGGCTC
TGGTCCGTCATCAAACATTCCTGATCAACCAACTGTCTCTTCTGGTCCTT
CGCCTACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACATGC
CTCGTCACATCCTGAGGAAGGTCCTCTACTCCAGCCGCGACCCTTTCTGC
CATGTTGAGCCATCTCTGAGCTTGTCGATGTGAACCTTGTAGTGTTGGCG
CTCGTATCATCGCGCCTTCCAATGCTCGCGAACATCCCCTTGATGCACCT
CGGACGACCATCCTTCGCTGACGACCTCCTTCTGTTACCGCTCTGTCAGA
TCGTTGTACCCTTCCGTAAGTCGTCCACTCCAGGAGGTTTCGACTCAACT
CCACCCACGCCACTCCTCCTGATCGCCACCATCGTATCCAATCCTTGCCC
TTCTCCGACTACCGAGATCCGATGATGACTGGGCCCATGGTCCAAGCGTT
TCGAGAAATTGACTAGACGGGCGCTCGATTTCCAAAGTTCGGAGGTGAGA
CTCGAACCTGGGGCACAAGCTTCGTTGCACCGCTAGTCTGATGAGTCGTC
AGTCAATCCTTCATCATCAGAGAATATCTCGATTCCTCCTGCTGCTATTC
CTGATACTCCTTTGCCTGCCTCTCCTACCTCTACTAAGGGTTTGTCGCCG
TCTGGTGCTGGTCATCGTAGTGGATGAAGAGAGAGCTAAAGGTCACAAAA
TAGTGGACAAAATGGGTGTCGCGAAAAATACCCCCTAAAATCTGCGGTTA
TTTCCCTTCGACCCCGGAAATCGTCAGAACTTCGTGCCCCCGACCAGACC
CGCAAATAAAAATAAAAAACCCGCATAGTTTCTTGACAATTTGTTCGGAT
CCGCATCCCGACCGTGGGGGGGGGGGTCCCCGCAGGGTAGGGATTAGCCC
TCGGCCCTCGGAGACCATCATCTTCAACTTCTTGTTGTGGTGGGTAAAAA
TGAAAATGTGTAGAAGAAAGAAGAAGTGAGAACAACAGCCAAAACCACAT
GGAGAAGAACTCAAAAGAGCCGCCTTTCACTAAGATTTCAATAAAAAGTC
TATAAATGTTTGGGGAAGTTCAAAAATTAACGTAATTTTTGGGTTTTTAA
AAGCGAAAATACATTAAAATACTTTTTGAAAATGGTCTGATCTACCAAAA
ATCCCACAAATTTCTTTAAGTTTCTCAAATTCATCAGACAAAACAAAAAT
TTTCAAGATCCTTGTTTTATTTTTTCAAGCTGTACTTTCCTTCATATCGA
TTTGGCTTTCGGATAATATCATGGTTAGGCCTAGCAGCAGGAGCAGCCAG
CAGCAGCGGCAGCAGCATTTTTTTTATCATCATCAATAGTCATCATCATC
GATGTATATCCCACCAGTGCCGCTGCTTTGAGTGTATTCATCTTCTATAT
TGGGGCTCTTCTGCCACTGCTGCGCACAGAAAAGGACTCATGACAAAGCT
TTTTGAAGAAAGACAATTACTTGCAGAGCTTCAGATCACACTGTTGCTGC
GCACGAAAAAAGACAATCGAATACATGCGGCTGCGTCGTTGGCTCATCAT
GAAAAAAGCTTTGTACAGAAGGGAGGTAACGATAGAGCAAAATGCACCCA
TATTCCCAATATTTGTTGAAGATATGCATTTGATTCGCTGGTATTGTTCT
GGAGGAGTGGCATGCTGGTAAACGTATTCAGCGACCTAGGATTTCATCAC
TGCTGCTTGGATTCAGAAATGCAAAAATAGCTATATGATATAATGATAGT
GGGCTATGTACTTCTTGAAAGACCACACCTCTTGAGGGAAATGGCAGAAA
TTCTATTTTTGCAGCACTTGCTTTTGAACACTTTGAGCATAGTAGTGATA
ATTAGCCACCATCATTTTGCTTTTATCATTATTATCATTATGTTCTAATA
AATCTTCTTCAAACAAATCAGAACAACTACTGGCACATGCATGCTGCTGT
GTGCTGTCATGACAAACACATGCATATATTATACTACATATGCATGCCAT
TATTAGTTGAAAACTACAACTTCTTCTTCTTTCTCCTTCTTCTCCTGCTA
CTACCCTGCTGATATTAATGCTCTCCTTCTTCTTCTTCTTAAAGGTAGTA
GTAGAAGAAGATGATTTTTTTTGGCTCGAAATTTGGAAAAACGGTGATTT
GTCCGTCTACAGAGGGGGGGGTGGTACCCCTTTAGCTCTCTCTTCATCAG
TGGTTCTTCTTCATTCAGAAAAAAGGCTGCTGCCCGCCGTCGTTCTCGAA
CTGCACGTCGTGCTAATAATGAACATTTGGCTCGTCGGGCTTCTTCGAGG
CTCCAAGGCAAACGGGAACGACCTCTCTCTGTCAGGATGCTCCAAAACGT
GGGCAATGCGTTTGCCTTTCTGGGTACTTATGGGGAATCTACTGACCGGC
CGCCTGAAGGCCTTGACGAATCTCGTCTCCTCCCAGACTGGCCCCAGTGG
CAGGAGGCTCTTCACGGTGAACTCGGTAGTCTTACTGGCAAGAACACCTG
GTTGACCGTCCTCCTGGTGCCAATGTTATTGGCACTCGATGGGTGCTCTC
AACAAAGAAATTCGATACTGACGGTCATCTAGTCAAGCATAAGGCCAGGC
TAGTTGCTCAAGGCTATTCTCAGAAATATGGTGTTGTGAGCAGGTTGTTG
GAGGACGAGGCCAAATAAAAAACATTTGCATATATATATATATATGACGA
AAACTCGACGGACCCTGAGCCTGAGCTGAACAACAAGAAGGAGCAGGAGT
AATTTATAGTAAATGAACAGCCATGGAAAAGACCCTCTGCTGCCTTCAAA
GCAGCTATTTCGACCGTGATGCTTCTTCTTGGTACCCCATAGTCCAATAC
TAGTACATGTAACAGCCACTGCTCGATCCTTCTCATTTTAGCTGACAAGG
CCTCCCACCCCACCCGCCCCCTTCCTCCCCGCCCCTGGTTCCCTTGGGCC
AGGTGGATATGAGTGCTGGTGGGATCCCGGAAGACCTGTTCCTGCCCCCC
CCGCCAGACGACGGCCCAGAAGACGACCGCGGCAGCACGGCGAAAGAGGA
GGAGGGGAAGAGATGAAAAATTAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:6695184..6700807-

>mRNA_H-akashiwo_Contig1.159.1 ID=mRNA_H-akashiwo_Contig1.159.1|Name=mRNA_H-akashiwo_Contig1.159.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=228bp|location=Sequence derived from alignment at H-akashiwo_Contig1:6695184..6700807- (Heterosigma akashiwo CCMP452)
GGCGGCGGGCGGGGGCCGGGGCCGGTCCCCCCCCGCCGGCGGAGCAGCAG
AGGAGGGGGGCGCCGCAGCCGCCGCCACTGCCGCCGCGGTGGTGGAAGCG
GAACCGGTGGATATGAGTGCTGGTGGGATCCCGGAAGACCTGTTCCTGCC
CCCCCCGCCAGACGACGGCCCAGAAGACGACCGCGGCAGCACGGCGAAAG
AGGAGGAGGGGAAGAGATGAAAAATTAT
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