mRNA_H-akashiwo_Contig1.148.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.148.1
Unique NamemRNA_H-akashiwo_Contig1.148.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.148.1 vs. uniprot
Match: A0A7S3Y0X6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0X6_HETAK)

HSP 1 Score: 185 bits (469), Expect = 4.270e-57
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 MATETTAGKKEKNFWIQQHESGSGKVDFAEAKNQALQGGYFNTVGDRKHQANNINEEDHHPIIQASSERGTVKLSLLSWMQSIQQRFGVNDL 276
            MATETTAGKKEKNFWIQQHESGSGKVDFAEAKNQALQGGYFNTVGDRKHQANNINEEDHHPIIQASSERGTVKLSLLSWMQSIQQRFGVNDL
Sbjct:   87 MATETTAGKKEKNFWIQQHESGSGKVDFAEAKNQALQGGYFNTVGDRKHQANNINEEDHHPIIQASSERGTVKLSLLSWMQSIQQRFGVNDL 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y0X6_HETAK4.270e-57100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:6163261..6171056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size460
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionDomain of unknown function DUF4098
Ec32 orthologEc-07_002820.1
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387031.1446502-CDS-H-akashiwo_Contig1:6163260..61632911681387031.1446502-CDS-H-akashiwo_Contig1:6163260..6163291Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 6163261..6163291 +
1681387031.1545682-CDS-H-akashiwo_Contig1:6166343..61664231681387031.1545682-CDS-H-akashiwo_Contig1:6166343..6166423Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 6166344..6166423 +
1681387031.1663141-CDS-H-akashiwo_Contig1:6170707..61708751681387031.1663141-CDS-H-akashiwo_Contig1:6170707..6170875Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 6170708..6170875 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387031.1841266-UTR-H-akashiwo_Contig1:6170875..61710561681387031.1841266-UTR-H-akashiwo_Contig1:6170875..6171056Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 6170876..6171056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.148.1prot_H-akashiwo_Contig1.148.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 6163261..6170875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.148.1

>prot_H-akashiwo_Contig1.148.1 ID=prot_H-akashiwo_Contig1.148.1|Name=mRNA_H-akashiwo_Contig1.148.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=93bp
MATETTAGKKEKNFWIQQHESGSGKVDFAEAKNQALQGGYFNTVGDRKHQ
ANNINEEDHHPIIQASSERGTVKLSLLSWMQSIQQRFGVNDL*
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mRNA from alignment at H-akashiwo_Contig1:6163261..6171056+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.148.1 ID=mRNA_H-akashiwo_Contig1.148.1|Name=mRNA_H-akashiwo_Contig1.148.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7796bp|location=Sequence derived from alignment at H-akashiwo_Contig1:6163261..6171056+ (Heterosigma akashiwo CCMP452)
ATGGCGACAGAAACCACTGCTGGCAAAAAAGGTGCACTCAGTGGAATATC
ATGCAGTGTTTTTTTTTTTTTTATCTACGTAGTGCACACCATGCTTCATG
CTCTTCATGGTGCCGGTCAGTCCCCATATCTTTGACCGGTGTTACTTTCG
CGGCTGTGCCGAGATCGCACCGGTCAATACTTGTGGGATAATGCCGCCAG
GCGTGGCGCTTATCCGGGTCTAGGGCCGCCTGGTCCGTGATCATTCTCGT
CTCACGTCGACATTCCCCCGCTAATCGTTCAATCGTTCGTATTCTCGAAT
TAGAAGCATCGTTCGGCTAACCAATCGCGCGCACATCCAACTGTCACCAA
CTTGACATGACGGGATTCGATCCGTCTACTTGATGCTTCGAAGTCGAACC
TTCGAACTATTGAGCTATTCCGGGTTTCAAGAAGTTTATGGGTGATGACT
CGTTTTCAATACCTAACGTAGTAACAAGCCTGATGGGTCCTAGGTATACC
TCTTAATGGTAATGAGTAGGCATCACGGTACACCTCTTTGCTGAGCATTA
CTACCGATTGGAGCAAAATTGAAATTTTTTGCCAGATTTCACCATTTTTT
TCCTTTACTTCTGCTGAATGGTGATGTTTTTTTTTTTTTTTTTTTTATAC
GTTTTTCTATTTTTGTTAATGATGCTCAGCAAAGAAGTGTATAGTGATAC
CTACCAAATCAGTACTCATTACCATTGAGTGTTACCATTTAGTGGTACCT
GGGAAGCTAAGGCTTGGAGGCTTCTTAGTATATTATTGAAAAGCAGCCAT
CAAAGAAGTAGTCCAACTATATTTACCAATACAAGATATTTTTGGTGGTT
TAAAAAATGGAGGAATTATGCCCCACATTTCACTGGAAATTTTGAACTCT
TATGTTGCGGCACTGGTTTCTTGTTTGTGCTTATTTCGAAATGTTCATTA
CCATTATTGATTCTCGGTGACTCACGAAGAATCATAGATTGATGTATTCT
CGAGTTTCAGTAATCTGCCAATATTGTTTTCCTTCAAGAAGACTCATTTC
TTGTGGGGATTGGTATTATGTTCTCAAATTAGGCACTTTCAGTTCTCTCA
GTATCAATATCAGTCATTCATATATAGTTCTCTGATGAGTTCATCTGCTG
ACGAGTAGAAACATTATGTTAGCAGATATTTACGAATATTTTCGTCTTCT
TTGGTCTTCTGCACTGTTGATTCATTTATACTGGCAGAACAGTTTCAGCT
GCCTATGGAAGAGATATGACTGCTGTTGTTGTATTTTTTCTATATTTCTT
CTTTGTTGATTTCTGAGTCTCTTCGGCTCATAACTTCCAACAATAGTATT
TGGCAATTTTCCCTAACCATAACAATGATTATCTTCACCCCTTTGCTGGC
TTGCTAAGTTAAAGTATATGCACTTTTGATCTGAAAGCTTCCACTGCTAG
CCACCTTAACAGTTGACTGGTGGTTCCGCTGCTTCACAGGTTATGGTGCC
CTCCTGCATTTCAGGTCAAAGAAACTCGGACTTGGGACATTCGCCCAACC
CGATGCGCAGGGTAGCAACAGTTTGAACTACTTTGATTCTGTCTGTGGAG
TTTTAACAATGCTGCAGTACTCATATTTCAGAAGAGATTTTTTAAGCTGC
GGTCAGCTTTCCCAATCTCTGAGAACTGTGATTCTTCCCTGGCTTTTGCA
TGCATCCACTGGTGATGATGACGATGTTGCGTTGATCAAAAGAAGAAGGA
CCGACAACGATGGACCTCTACTCCTCCTTGTACTTCTCGCTGCTGTTTTT
GTTTGGAGCTCTTGTGTATGCAGAGTACTCCTGTACATGCATGAACACCA
CAGTTTCTTCTTTTTATCATCCGCTTACTTCTTTATTGAGTTTGGCTTCA
AATGATCTGTCTATGTTCAGAGTAACGGTACTTGTACTTGCACTGAAGTT
GGCATGAGATTCTCTTCTTCTCATGCACTTACGTTCAGAAATTGACGATG
ACGACGGCGACGCCAGCTTTTTGACTTAGACCTCCATCACCACCGCTTCT
TGTGGTCATTGAGGAAGAAGGGCCAGTTTCTCGCTTGCAGCAGATCTTAC
TATCTCAATACAAATGAGTTGCATAATATAAATGCTCTAAAACAGTTGTC
ATTGCGACCTCAAGCAGAACTTCTGGCTATACTGAATTCGGCCAGTCTCA
TTTCATATAACCCAGATCTCATCACAGATGTATCACTAGTGACCTGCGTA
ATATAGACGCTCCAGATAAGCCATCAATACAGACTTATCAAGAACTGATG
GCAAGGGTGGCTACCCAAGCAATCTAACCCAATATTACTCACTGTTTTGA
AACATTTTTGAAATGGAGGGGTTGCGACACTGGTGTCTTATTTGTGCTTA
TTTCAAAATGTTCTTTACCATTATTGACTCTCGATGACTCACGAAGAAGC
ATAGATTGACGACGTATTCTTGAGTTTCAGTAATCTGCCAAGATTATTTT
CCTTCAAGAAAACTCATTCCTTGTGGATTGGTATTATATTCTAAAATCAG
GTACTTTGAGTTCTCTCGGTATCAGTATCAGTCATTCATATATAGTTCTC
TGATGAATTCATCTGCTGATGAGTATAGAAAAAATATGTCAGCAAATATT
TACAAATATTTTCGTCTTTTTGGTCTTCTGCACTGTTGGTTCATTTATAC
TAGCAGAACAGTTTCAGCTGTCTATGGAAGACATGTGACTGCTGTTAAAT
TTTTTCTGTCTTCTTTGTTGATTTCCGAGTCTCCTCGACTCATAACTTCC
AATAATAGTATTTGGCAATTTTTCCTAACCATAACAATGATCATCTCCAC
CCCTTTGCTGGCTTGCTAAGCTAAAGTATATGCACTTTTGATCTGAAAGC
TTCCACTGCTAGCCACCTTAACAGTTGACTGGTGGATCCACTCTTTCACA
TCTTATGTACGATAATCTATCAGTAGCCCACAAAAGCCTGATGATTACAA
TATGCATTATTTTTACACAGCAATTAATTCCATTTCCATCTGCAACAAGA
GATATCGTGTTGTTGGTAACTGTTGTTTTTCAGAAAAAAACTTTTGGATT
CAGCAGCATGAGTCTGGCTCTGGTAAGGTTGACTTTGCAGAAGCAAAAAA
TCAAGCATTGCAGGTGAGCCAAAATTTAACTTCTTTGTTGAATAATAAAC
AGCTCCTGGCTTTGAGTTTGTGGCGCCTGAATTTGATTCATGAGAATAAT
CAACAATGGCAGATTGATAAGGACATTTTTTATAATCCAACAGAACTTCA
TCAGAACTAATTATTTCGATTGAGAGTCCGATCTTCTTCAGGATTCCTAG
CCTCTGGATAGTTCACCTGAGAAATATATCAATGAAATTCTTCTTGCAAC
ATCATCACCACACACCCCGCTGTTCACTTGTGCTCACAACAACGACAAGA
GGAGGAGGGTGCCTCCTACCAAAAAATATTCAACAGAAAAGGGGCTAAGA
TACAAAGAAAAAGAAAAACCAACAAAACACCGCCAAAATGGTAGGATGAC
AACAACAACGCTAAGGAGAGAAGCAATGTCAACAGTAGCATCAAGAAGAA
GACAGATGGAGAAGAAAGTAATTATCAATTCACGACGAGAAGAAGAAAAA
CAGTACAGCTAATTGCTAACAACAGTAGATGTATTTTATCATCAACGTCT
ACTATACAACAGCGATAACAAGGAAGAGGCTGGGTGCTCATGAATGATCG
CTTGGTCTGGGGCTCGTCTTTCTCTGCGCCATAGGGCAAGCTGGTACGAC
TTATGGACGATTTTTTTCGTACGTCGTACTTGTACGTGCCGTACGTGCAA
GTACAACAAGTACGACTTATCTCCCAAAAACGATCCTGCCAAATGTAGCC
CTCACGGAGCTACTAGCTCTACTTAGAAACTGATCCAAGCCCTCAATCCG
AACTTCCTCCTTTGATCTACCTGTCGAAGCCCACCCTTATACCCTCCTCG
CTCATTGCTAATTTTCTTCGACTTCTTATCATCATGGTGGTGAGGGATGA
TGATGGATGAATGAGGGTGGTGGTGGTGGTGGTGGTCGTAGAATGAAGGA
GAACCACCACCAGCAGCAGCAGCAGAAGAGTACCAGGACCGTCAATATCA
TATTGTGATTTGCTTAGAAAATTCTCGGCCTTTTTTAGTCTTTTTGATTG
GCCACATAATATAATAATTTTCATGAAAATACAATCGTCCAACAAGACAA
AACAAAAGGAGCGCAGGTGGCGAGGCGAAATCATAATAATCATCCCAAAA
GAAGAAGAACGATCCAATTTGCAATCGCCAGACTTCGACTCGAAATTGTC
AATCGCCAGCCGAATATGGGATCCTAAGGGCGATCTGAGCAAGAAGAGAA
AGGAAGCTGGCGAATAAGTCTTGTTGTTGAAGGGGTCGCCTCTGGATTCG
ACGAGGACGAGTCCAGTGGTGATGATGGTGGCTGTGATTTGGAGCTCTGG
CCGAAGTACCAGCATGAAGACTCTGGTGCAAACTCAAACTCTGACAGCAG
CAAGGAGGATCAGGATACATTGGGTGCACCTGGTAGTAGACCAACCATTC
GTTTGGCAGGTATCAATCCTATCCCTGGCACTTTGGAGCTCGTTGCCTAG
CGTGTAGATGATGATGGCAATTAGATTGCTCAAGTTGTGAGGGGGGGGAG
GTGGGGGGGCTTTGGGTGGGTGGGGGACAGGGAGAGGGGGAAAGCTTCCA
AAAAAAAAAACAAAGAAGGTACATAGCTAGTACCAAAAATGAGACTTTTT
GCTAAGTGCAAACACAAAATTATGATAATTATTAACCAGGACACAATGCA
TATATGTATGACAGAAGGGGCAACAGCCACAAGGGGGTGACGGCTGAGGG
GGGGGGGGGGGACCCCCTCCTCATTATCTCTTGCCAAAAAAAAGGAGATA
GGGCTAGTAAATTGATGGACGAAACAGATTGGCTGTATTATTATTACTAG
GAGTTAAAAAAAAAAAAGAAGAAGAAGAAGAAAAGCTCTGGACCAACAAG
TACGGGAAAGTATGGGATGTTCGAACATCTTGTACTTTCCCGTACTTATG
GCAAGTACCGTACTTTCCCGTACTTGTTCATACTAGCTCACCCTATGCTC
TGCGCCCATTCCATCCTGCGCTTGGTCTCTGGGATAGCCCAGTCCCAGCA
TTTGCTGATGGTATATCCATGATCCTGATTCATGAGCTGTGTCAGCTCTT
TGCCAGGGTTTGCTGCCTGGACGAACAGAGCCTCGTTCGCCCTTCTCAGC
TATAGCTGTTTCTCTGTATCCAGCATGAGCGTGCCCTCAAAGTCCACTTT
GTGGTCATGGTGGGAGGTGTGGTGGGCAGGTCCATTCAACATGTCTGCTG
CCGCGGTCTCAGCCTTATGTTGTTTCACCCTCGCTCCAAGAGGCTGTTTG
GTCTCACCAATGTATGGACGGGAGAAGTCTTTACCTGGTATCATGTAGAC
CGTGCCTTCCTTCTCCATTGGATGTTGTGCTGGTTTGAGTTTGGCACATA
GCTTTTGCTTGATTTGAGACACCACCACCAAAGACTACATCTACCCCTGT
GGCTTTCTTCAGGCTTTTCTTCAGTTTATCAGATGCCCCTTTCACATACA
GCACCTTGAGAACCACCCTAGCCTCTTCTTCTTGCCCTTGGATCTCTGTC
TTCTTCTCCTCCCTGGTTGTGTTGCCCCTCTCAGCCTTGGGCACCCAGCT
ACTAACGATCCTGTCAACATGTTCCGGGTTGTTCCTGATGAAGATGTTTG
CCAGAAGCTCCAACTCCTTGGCATGAGCCTCCGGCGTGCTCGACACAATG
TCGTTTCTATGTAAGAAACCACGTAGAATCCCATCTTTCAGGTATTGTGG
ACGGTTGGACTTGGAGCTCAAATATACGTAGGCATTGGTGAGTTTCCTGT
ATACCTCCTCCTAGTTCTCCCACTGGTGTAAGTGCTGGTTGAATGCAGTT
TAAAGGTGAGACGGCCAAGAACAAAGGTCTCTGCATACCGGTCAATGATT
GCTGTGCACATCTAACTTGCCGGTGGGGCAGGATCCTTTTGGCTGGCTCT
AAACTTCCTTTCAATGCTGATTTCTGCGACACGCAGCGAAGAGTCTTGGT
GGCAACTGGCAACCCGGCCACAGAATTGGAAACGTAGGTGCTTGGCCAAG
AGCTGCAGGCCGCCAACATGGAGGAGAGGTGTGCCTTCCCAGTCCCTTAA
GGGCTGGTTGGGCTGCTTGATGGAGAAGTATATTTTCATCATACAGGTAT
GTGGTTGTTATTGATCTTTCATCAGCAGATCGTCGCTGTTATCACCACCA
CCACCACCACCACCATTGTAATAATGGTGGAGTAAAGTGATGCAGGAAGA
AAACGAGAAAAGAAAACGAAGAAAACACGTAAGCATAAAGCAATCACTTC
TCCTTTTAACTGCTGCACCAAGAAGTATAAGAATCAATATCAGAAGAACA
ATTAGAGGAGACAAAATACTAACAGGAATAATACCATGGTATTTGGCATT
AAACCTTTCAGACCTTAGGATACAGAGCGCATGTGCCACACACTGTCTCA
GACGGGAAGTCATAAGAACAGCTTACAACAGTAAAAATATTATGCCCACC
AGGCAACAAAAATACAAGAAGGGTCGATCGAAGAGGGCAAGTAAAAGAAG
GGTGCGAATCTCGTGATGTATTTGTGTTTTCCATTCTTTTTCTTCTTTTC
TTCTGTTTTGTGCTGTCGGCGGCAGGGATGCAAGGAAGAGGAGGAGGAGA
GAGGAGGGGTGGGGTGTAACTGTTACCTTTTTTTGTCTTATCGGCTATTG
GTGTTGGTGTGCTGGCTGGACCATCTTCATCATTACCTTGATGGGACTTA
GTTTGGAGTTTGGCCAACTTAGTGACTCTGTGAAGAAGGCAGGACTTCAT
GTTGAAACGTTGGGAGCTGGAGAGGCGTATCACTTGCTAGAAGATCATTT
ATTAATATATTTCCGTCCCATCAGTGATCACTTTCATTTCACTACGTATA
GTCGTCCTAATGTAAGATCATGAATCTATACAGCATATACTTGCTCTAAA
AATTACATCATCCCTATCCTATCCATGTTTCATTCTACTTTGACAAAAAA
AAAAAAAAAAAATCTTTCCTATGTTTTCTGATGCTCTTTCTACTATACTA
TACACTTCTTGTCAAGTTTTCCACAACGGCTATATAGCATAAGTAGGCTC
CTCTGCCAGTTACCCAGCAGTATGGTGATTCCATCCTCATTATACTTCTG
TATGCCTTCGGCCCTTGGCAATCCCGACACCCAACTGATGTGGCAAGATA
ACCTCATGTCACATGTTTGCCCAACAACAACACAAAAAAATAATAAATAT
ATCTGCGCTTTTTCGTTGGGTTGTTTCAAACACATCTTCAATTATAGGGT
GGCTACTTTAACACTGTTGGGGACAGAAAACACCAAGCAAATAATATCAA
TGAAGAAGATCATCATCCTATCATTCAGGCCAGCTCAGAACGAGGCACTG
TGAAGCTGTCTCTGCTATCCTGGATGCAAAGTATACAACAAAGATTTGGT
GTAAACGATTTATGAACTTACTTGTATGCCACGACATACATATAATAAAG
TAGTAACTGTGTTATCATTACTACTTCTATTTCTATGATATTATTCTCAC
TATTGTGAATGCCTAGTTGTACTGATAAGGGGTAATGCTTCTCCGAAGCC
AGTGGTACATTACAACTGGCCTTCTGAAAACAATACATGATATTAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:6163261..6171056+

>mRNA_H-akashiwo_Contig1.148.1 ID=mRNA_H-akashiwo_Contig1.148.1|Name=mRNA_H-akashiwo_Contig1.148.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=279bp|location=Sequence derived from alignment at H-akashiwo_Contig1:6163261..6171056+ (Heterosigma akashiwo CCMP452)
ATGGCGACAGAAACCACTGCTGGCAAAAAAGAAAAAAACTTTTGGATTCA
GCAGCATGAGTCTGGCTCTGGTAAGGTTGACTTTGCAGAAGCAAAAAATC
AAGCATTGCAGGGTGGCTACTTTAACACTGTTGGGGACAGAAAACACCAA
GCAAATAATATCAATGAAGAAGATCATCATCCTATCATTCAGGCCAGCTC
AGAACGAGGCACTGTGAAGCTGTCTCTGCTATCCTGGATGCAAAGTATAC
AACAAAGATTTGGTGTAAACGATTTATGA
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