mRNA_H-akashiwo_Contig1.146.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.146.1
Unique NamemRNA_H-akashiwo_Contig1.146.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.146.1 vs. uniprot
Match: A0A7S3YDV8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YDV8_HETAK)

HSP 1 Score: 73.9 bits (180), Expect = 5.200e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:   43 MGNEASQEGSADGTPAQHREAGVAKVSSLKARMAKRKLNR 162
            MGNEASQEGSADGTPAQHREAGVAKVSSLKARMAKRKLNR
Sbjct:    1 MGNEASQEGSADGTPAQHREAGVAKVSSLKARMAKRKLNR 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YDV8_HETAK5.200e-16100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:5745084..5745349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387031.05778-CDS-H-akashiwo_Contig1:5745083..57452201681387031.05778-CDS-H-akashiwo_Contig1:5745083..5745220Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 5745084..5745220 +
1681387031.069533-CDS-H-akashiwo_Contig1:5745323..57453481681387031.069533-CDS-H-akashiwo_Contig1:5745323..5745348Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 5745324..5745348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.146.1prot_H-akashiwo_Contig1.146.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 5745084..5745348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.146.1

>prot_H-akashiwo_Contig1.146.1 ID=prot_H-akashiwo_Contig1.146.1|Name=mRNA_H-akashiwo_Contig1.146.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=54bp
CIIWIILFQGEYASMGNEASQEGSADGTPAQHREAGVAKVSSLKARMAKR
KLNR
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mRNA from alignment at H-akashiwo_Contig1:5745084..5745349+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.146.1 ID=mRNA_H-akashiwo_Contig1.146.1|Name=mRNA_H-akashiwo_Contig1.146.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=266bp|location=Sequence derived from alignment at H-akashiwo_Contig1:5745084..5745349+ (Heterosigma akashiwo CCMP452)
TGTATTATTTGGATTATATTATTCCAGGGCGAGTACGCAAGCATGGGAAA
TGAGGCTTCACAAGAGGGCAGCGCCGATGGTACTCCTGCCCAGCATCGTG
AAGCTGGTGTTGCTAAGGTCTCTTCGCTAAAAGCAAGGTAAAGTGTTTGA
AGGACACCCAACACAACAGTGATCGAGCAATGATAATCTTAAATTAAAAG
AACGAAAGATCTCACGAGGACAATCCCTTGCCCATACCAGGATGGCGAAA
AGGAAGCTGAACAGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:5745084..5745349+

>mRNA_H-akashiwo_Contig1.146.1 ID=mRNA_H-akashiwo_Contig1.146.1|Name=mRNA_H-akashiwo_Contig1.146.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=162bp|location=Sequence derived from alignment at H-akashiwo_Contig1:5745084..5745349+ (Heterosigma akashiwo CCMP452)
TGTATTATTTGGATTATATTATTCCAGGGCGAGTACGCAAGCATGGGAAA
TGAGGCTTCACAAGAGGGCAGCGCCGATGGTACTCCTGCCCAGCATCGTG
AAGCTGGTGTTGCTAAGGTCTCTTCGCTAAAAGCAAGGATGGCGAAAAGG
AAGCTGAACAGA
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