mRNA_H-akashiwo_Contig1.143.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.143.1
Unique NamemRNA_H-akashiwo_Contig1.143.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:5626016..5627370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size250
Hectar predicted targeting categoryother localisation
Exons3
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387030.8638709-CDS-H-akashiwo_Contig1:5626015..56260591681387030.8638709-CDS-H-akashiwo_Contig1:5626015..5626059Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 5626016..5626059 -
1681387030.8718886-CDS-H-akashiwo_Contig1:5626741..56268441681387030.8718886-CDS-H-akashiwo_Contig1:5626741..5626844Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 5626742..5626844 -
1681387030.9067552-CDS-H-akashiwo_Contig1:5627268..56273701681387030.9067552-CDS-H-akashiwo_Contig1:5627268..5627370Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 5627269..5627370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.143.1prot_H-akashiwo_Contig1.143.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 5626016..5627370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.143.1

>prot_H-akashiwo_Contig1.143.1 ID=prot_H-akashiwo_Contig1.143.1|Name=mRNA_H-akashiwo_Contig1.143.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=83bp
RSSNASKGARKSAATKSPSPKKMVRNESVDSEAGLRGKVAPTKGKMSRAR
IESEPVIKNKKETVPQAPVWGVGAAAGEEEEGE
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mRNA from alignment at H-akashiwo_Contig1:5626016..5627370-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.143.1 ID=mRNA_H-akashiwo_Contig1.143.1|Name=mRNA_H-akashiwo_Contig1.143.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1355bp|location=Sequence derived from alignment at H-akashiwo_Contig1:5626016..5627370- (Heterosigma akashiwo CCMP452)
AGATCCTCAAATGCCAGTAAGGGGGCAAGAAAAAGTGCCGCCACTAAGAG
CCCGAGCCCAAAGAAAATGGTCCGTAATGAGTCAGTAGACTCTGAAGCTG
GGGTAAGTCTCTTTTCTTCTTCAGCATCAGTGGGTTTCAAGCACATAACA
GGAATCCACTCACCTTCTATTTTTAGCTGCCTAGTATATGTTAACACGTT
TATGCATACTGCATGAAGAATAGATCCCACTACACTATACCTCTGCTTCT
CGTATACTCGTCATCATGTATATGCCTCTGGAGGAGTTGTTTTTAAGTGG
AGAGCATTTTACTTATCAACTGAATAATTCCTTCAAATTTTTTTCTGTCG
CCCTGAAGCAAGTTTTTTCCTCAGCTCTTTCCCCACTGCCCTTTGGTGGG
TGTGATCTAGTTTTTGAATAGTATAGCATACATATATTCGTGGGCTCGAA
GCCAAGCCTTTCCCTGCTCTGATTCTAAACCGTACCACCCTTTCTTTTGC
CTTTGTTCATACACTATGCTTACCAGTTGAGGGGTAAGGTGGCTCCAACA
AAAGGGAAAATGTCTCGCGCTCGAATTGAGTCAGAACCAGTAATAAAGAA
TAAGAAGGAGACTGTACCCCAAGCTCCAGGTGAGGACGGCATCATGCATG
GAACCGAAGAATCACGACGCATGTTCAAGAAATGAGAGTTTACATACAGT
TTCCGTTCTCCCTGTACAGTGTCTGCCTGCCTAACTTCCCCCACACAACG
GCCTGGCTTGGAAAACAACTAGCCGCCTAAAATAATGTTTTCTCAGCTTG
CCCTCCTCCAGGCCATTTTCCCTTCTTCTCCTCTCTCTACCCTGTTTCCC
CCTTCCTTTCCCTAACAAATCTCCCACCATGTCTGGTGTAACCTTTTTTC
ATAAAATACATAACGCTTTGACTCAAGCTTAGTGTTTTCTTTTTCCACGA
TTGTTGATCATGCCCGCGCCATCACTCCCGCACACCTCTTCGAACGACGT
TTTGAAGCTGCCCAACTTTGAGCAAACGCGCAAGGCCCTGCGCGTTCCGT
TTGAATAATTTGTTAAATGGGTATAGAACAACAATGTGCCTAACAGTAGG
TCTAGATCAATGAGGAATGGTGCAGGTCCTAAAGGGTTAAACAGCTAACT
AGTTCCTTTTCGCCCGAGCGTGGGCCTGCCTCCTCCCGCCAACCTGGCCA
ACGCGGCCAAGGGTTTCTTCGCCCCGGTGATCGACGACCCAAGGGCGGGG
AGCAGGCCCGTCGCCCTTCCCCCTCCCAACCCCCCTCCCCCCCCCCCTTG
CCCCTTCCCAGTCTGGGGCGTGGGCGCCGCCGCCGGCGAGGAGGAGGAGG
GGGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:5626016..5627370-

>mRNA_H-akashiwo_Contig1.143.1 ID=mRNA_H-akashiwo_Contig1.143.1|Name=mRNA_H-akashiwo_Contig1.143.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=249bp|location=Sequence derived from alignment at H-akashiwo_Contig1:5626016..5627370- (Heterosigma akashiwo CCMP452)
AGATCCTCAAATGCCAGTAAGGGGGCAAGAAAAAGTGCCGCCACTAAGAG
CCCGAGCCCAAAGAAAATGGTCCGTAATGAGTCAGTAGACTCTGAAGCTG
GGTTGAGGGGTAAGGTGGCTCCAACAAAAGGGAAAATGTCTCGCGCTCGA
ATTGAGTCAGAACCAGTAATAAAGAATAAGAAGGAGACTGTACCCCAAGC
TCCAGTCTGGGGCGTGGGCGCCGCCGCCGGCGAGGAGGAGGAGGGGGAG
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