mRNA_H-akashiwo_Contig1.133.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.133.1
Unique NamemRNA_H-akashiwo_Contig1.133.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.133.1 vs. uniprot
Match: A0A7S4DEA8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEA8_HETAK)

HSP 1 Score: 194 bits (494), Expect = 8.510e-62
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 3 
Query:  174 MMENSYFATTVVDETSGNQKNVVLYPGIGTSEIKDVLGAAFSLESEVVGVKDSKQNIAFPLSLLSRAPAYFSNRAVYSLLTKCSGAPEQHKSNPASAMFS 473
            MMENSYFATTVVDETSGNQKNVVLYPGIGTSEIKDVLGAAFSLESEVVGVKDSKQNIAFPLSLLSRAPAYFSNRAVYSLLTKCSGAPEQHKSNPASAMFS
Sbjct:    1 MMENSYFATTVVDETSGNQKNVVLYPGIGTSEIKDVLGAAFSLESEVVGVKDSKQNIAFPLSLLSRAPAYFSNRAVYSLLTKCSGAPEQHKSNPASAMFS 100
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BLAST of mRNA_H-akashiwo_Contig1.133.1 vs. uniprot
Match: A0A7S2RBP6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBP6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.300e-10
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 3 
Query:  195 ATTVVDETSGNQKNVVLYPGIGTSEIKDVLGAAFSLESEVVGVKDSKQNIAFPLSLLSRAPAYFSNRAVYSL 410
            AT V  +    QK +++YPG+  +EIK VL AAF L   V G++D  Q++ FPLSL+S+APA+F++R    L
Sbjct:   21 ATVVNVQHGATQKKLLVYPGMPAAEIKCVLAAAFGLTDAVAGLRDEDQDVHFPLSLVSKAPAFFADRPALGL 92
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BLAST of mRNA_H-akashiwo_Contig1.133.1 vs. uniprot
Match: A0A6H5KN82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN82_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.750e-8
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 3 
Query:  192 FATTVVDETSGNQKNVVLYPGIGTSEIKDVLGAAFSLESEVVGVKDSKQNIAFPLSLLSRAPAYFSNRAVYSLLTKCSGAPEQ 440
            FA  V D      K +++YPGI   +++  L AAFSL  +V G+ D   +  FP+S +SRAP YFS RA   ++    G  +Q
Sbjct:    4 FAVNVQDPQGMLTKALLVYPGISGRDVQQALRAAFSLPDKVAGLVDPSLDTYFPVSFISRAPKYFSERAPCRIVPVLGGTAKQ 86
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BLAST of mRNA_H-akashiwo_Contig1.133.1 vs. uniprot
Match: A0A835YJ43_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ43_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.920e-7
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 3 
Query:  192 FATTVVDETSGNQKNVVLYPGIGTSEIKDVLGAAFSLES--EVVGVKDSKQNIAFPLSLLSRAPAYFSNRAVYSLL 413
            F   V D      K V+L+PGI   ++ + L A F L+   ++VG++D  +NI FPLSLL +AP YFS R  Y L+
Sbjct:   11 FPCKVQDPEGRVTKEVLLHPGIAVQDLAETLHAGFGLQGTDDIVGLRDPAKNIYFPLSLLCKAPQYFSARPPYRLV 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S4DEA8_HETAK8.510e-62100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2RBP6_9STRA4.300e-1045.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5KN82_9PHAE4.750e-838.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJ43_9STRA1.920e-742.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:5296648..5297532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size474
Hectar predicted targeting categoryother localisation
Exons3
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387036.4256735-CDS-H-akashiwo_Contig1:5296647..52967621681387036.4256735-CDS-H-akashiwo_Contig1:5296647..5296762Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 5296648..5296762 -
1681387036.4340668-CDS-H-akashiwo_Contig1:5296888..52969941681387036.4340668-CDS-H-akashiwo_Contig1:5296888..5296994Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 5296889..5296994 -
1681387036.4419498-CDS-H-akashiwo_Contig1:5297280..52973591681387036.4419498-CDS-H-akashiwo_Contig1:5297280..5297359Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 5297281..5297359 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387036.4493437-UTR-H-akashiwo_Contig1:5297359..52975321681387036.4493437-UTR-H-akashiwo_Contig1:5297359..5297532Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 5297360..5297532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.133.1prot_H-akashiwo_Contig1.133.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 5296648..5297359 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.133.1

>prot_H-akashiwo_Contig1.133.1 ID=prot_H-akashiwo_Contig1.133.1|Name=mRNA_H-akashiwo_Contig1.133.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=100bp
MMENSYFATTVVDETSGNQKNVVLYPGIGTSEIKDVLGAAFSLESEVVGV
KDSKQNIAFPLSLLSRAPAYFSNRAVYSLLTKCSGAPEQHKSNPASAMFS
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mRNA from alignment at H-akashiwo_Contig1:5296648..5297532-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.133.1 ID=mRNA_H-akashiwo_Contig1.133.1|Name=mRNA_H-akashiwo_Contig1.133.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=885bp|location=Sequence derived from alignment at H-akashiwo_Contig1:5296648..5297532- (Heterosigma akashiwo CCMP452)
CCACCACCCATCAAAATTCTAGGTTGCCGTTGGCGTTGGGGTGGCAGCGT
TGCTTGATTGATAGAAATTGATATCCAAACCCACCGTAACTTACCAAGTG
GAATCAGAGTGATAGTGATATCCTGTTGATAGCTTGACTGTGTTGCCATC
AATCTGGATCTTGGTTTCTTTCTATGATGGAGAACAGTTATTTTGCAACC
ACGGTGGTCGATGAAACTTCTGGCAATCAGAAAAATGTTGTGTTGTACCC
AGGTGTGCAGGGGCTTGAATCTGTTCCGCCTTTCATCAATCAATTTCATG
AGTGTTAAAGCATCAGCTGGGTTGGCATTTCCTCATGAGCTTGGGGAGTT
GCCATAAGCTACCAACAATTGAAAAGTTTGTTTTTTTCTTTTCCCTTTTC
GTTTTCTTTTTTTCATTTTCTTTCGGTAACCAAAGTTTCCTTTCCCCCAA
CCAGTACACTCACTGTTGAACCCAACAACACCTTATAGCAAACACTTTTT
TTCCGTTACACAAACCTGCACTGGTGATTTTCCACCAGGGATCGGCACTT
CAGAAATCAAAGATGTGTTGGGAGCAGCTTTTTCACTTGAATCTGAAGTT
GTTGGAGTCAAAGACTCGAAGCAGAACATTGCCTTTCCACTCAGGTCTAT
CTGCTCCTTTTTTTCTTCAGTGCTAACATGTGAAGAAAATTGTATTTTGC
AGCCATCCGTTGAGTGATTTTACCTGCCCTCTCCGATCTATATATATGTA
TATATCTGTTGTATATATAGCCTCCTGTCCAGAGCACCTGCATACTTCTC
AAACCGAGCTGTATACTCCCTCCTAACGAAGTGCTCTGGGGCCCCAGAAC
AGCATAAAAGCAACCCTGCAAGTGCCATGTTTTCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:5296648..5297532-

>mRNA_H-akashiwo_Contig1.133.1 ID=mRNA_H-akashiwo_Contig1.133.1|Name=mRNA_H-akashiwo_Contig1.133.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=300bp|location=Sequence derived from alignment at H-akashiwo_Contig1:5296648..5297532- (Heterosigma akashiwo CCMP452)
ATGATGGAGAACAGTTATTTTGCAACCACGGTGGTCGATGAAACTTCTGG
CAATCAGAAAAATGTTGTGTTGTACCCAGGGATCGGCACTTCAGAAATCA
AAGATGTGTTGGGAGCAGCTTTTTCACTTGAATCTGAAGTTGTTGGAGTC
AAAGACTCGAAGCAGAACATTGCCTTTCCACTCAGCCTCCTGTCCAGAGC
ACCTGCATACTTCTCAAACCGAGCTGTATACTCCCTCCTAACGAAGTGCT
CTGGGGCCCCAGAACAGCATAAAAGCAACCCTGCAAGTGCCATGTTTTCA
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