mRNA_H-akashiwo_Contig1.100.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.100.1
Unique NamemRNA_H-akashiwo_Contig1.100.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:4418922..4419260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size339
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387032.5207675-CDS-H-akashiwo_Contig1:4418921..44192481681387032.5207675-CDS-H-akashiwo_Contig1:4418921..4419248Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 4418922..4419248 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387032.530451-UTR-H-akashiwo_Contig1:4419248..44192601681387032.530451-UTR-H-akashiwo_Contig1:4419248..4419260Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 4419249..4419260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.100.1prot_H-akashiwo_Contig1.100.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 4418922..4419248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.100.1

>prot_H-akashiwo_Contig1.100.1 ID=prot_H-akashiwo_Contig1.100.1|Name=mRNA_H-akashiwo_Contig1.100.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=109bp
MADVVQPSERLACSHSTTDRWPFQAALSIALLVRPSERLACRHSTKDRWP
CSAAFSRLCFLCAISCPSRRPLRSTILQHAARSKQVHCISNQQQGLIVQS
ARPVYNLL*
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mRNA from alignment at H-akashiwo_Contig1:4418922..4419260+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.100.1 ID=mRNA_H-akashiwo_Contig1.100.1|Name=mRNA_H-akashiwo_Contig1.100.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=339bp|location=Sequence derived from alignment at H-akashiwo_Contig1:4418922..4419260+ (Heterosigma akashiwo CCMP452)
ATGGCCGACGTAGTACAGCCCTCAGAGCGGTTGGCATGCAGCCACTCAAC
CACAGACAGGTGGCCTTTCCAGGCTGCCTTGTCCATTGCCCTCTTGGTGC
GGCCCTCAGAGCGGTTGGCATGCAGACACTCAACCAAAGACAGGTGGCCT
TGTTCGGCAGCTTTCTCCAGGCTTTGCTTTCTGTGTGCTATTTCGTGCCC
ATCAAGAAGACCGCTGCGAAGCACTATTTTACAACATGCTGCTAGGTCCA
AACAGGTGCACTGCATCTCAAACCAACAACAGGGACTGATCGTACAAAGC
GCCCGGCCTGTATATAATCTTTTGTGAGGAGAGGCTTTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:4418922..4419260+

>mRNA_H-akashiwo_Contig1.100.1 ID=mRNA_H-akashiwo_Contig1.100.1|Name=mRNA_H-akashiwo_Contig1.100.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=327bp|location=Sequence derived from alignment at H-akashiwo_Contig1:4418922..4419260+ (Heterosigma akashiwo CCMP452)
ATGGCCGACGTAGTACAGCCCTCAGAGCGGTTGGCATGCAGCCACTCAAC
CACAGACAGGTGGCCTTTCCAGGCTGCCTTGTCCATTGCCCTCTTGGTGC
GGCCCTCAGAGCGGTTGGCATGCAGACACTCAACCAAAGACAGGTGGCCT
TGTTCGGCAGCTTTCTCCAGGCTTTGCTTTCTGTGTGCTATTTCGTGCCC
ATCAAGAAGACCGCTGCGAAGCACTATTTTACAACATGCTGCTAGGTCCA
AACAGGTGCACTGCATCTCAAACCAACAACAGGGACTGATCGTACAAAGC
GCCCGGCCTGTATATAATCTTTTGTGA
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