mRNA_H-fluviatilis_contig101017.274.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig101017.274.1
Unique NamemRNA_H-fluviatilis_contig101017.274.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig101017.274.1 vs. uniprot
Match: D7G7E8_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E8_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.620e-25
Identity = 49/57 (85.96%), Postives = 49/57 (85.96%), Query Frame = 1
Query:    1 NAWYCPICKKHQPATKKLDLWKVPPVLIVHLKRFAGSGKISCPVVFPLTGLDLSEVV 171
            NAWYC  CKKHQ ATKKLDLWKVPPVLIVHLKRFAGS KIS  V FPL GLDLSEVV
Sbjct:  255 NAWYCSNCKKHQRATKKLDLWKVPPVLIVHLKRFAGSSKISSLVTFPLEGLDLSEVV 311          
BLAST of mRNA_H-fluviatilis_contig101017.274.1 vs. uniprot
Match: A0A158PN45_ANISI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A158PN45_ANISI)

HSP 1 Score: 89.7 bits (221), Expect = 1.480e-19
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 1
Query:    1 NAWYCPICKKHQPATKKLDLWKVPPVLIVHLKRFAGSG----KISCPVVFPLTGLDLSEVV 171
            N WYCP CK+HQ ATKKLDLW++PP+LIVH+KRF  SG    KI  P+ FPLTGLDL++ V
Sbjct:  726 NLWYCPHCKEHQRATKKLDLWRLPPILIVHMKRFTCSGWTREKIDIPIKFPLTGLDLTDRV 786          
BLAST of mRNA_H-fluviatilis_contig101017.274.1 vs. uniprot
Match: A0A8H6T2X4_9AGAR (Uncharacterized protein n=1 Tax=Mycena indigotica TaxID=2126181 RepID=A0A8H6T2X4_9AGAR)

HSP 1 Score: 85.5 bits (210), Expect = 4.580e-18
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 NAWYCPICKKHQPATKKLDLWKVPPVLIVHLKRFAGS----GKISCPVVFPLTGLDLSEVV 171
            + WYCP CKKHQ ATKK DLWKVP +L+VHLKRF+ S     KI  P+ FP+ GLDLS +V
Sbjct:  924 DLWYCPKCKKHQQATKKFDLWKVPDILVVHLKRFSNSRTLRDKIDAPIDFPIEGLDLSSMV 984          
BLAST of mRNA_H-fluviatilis_contig101017.274.1 vs. uniprot
Match: A0A067Q680_9AGAM (Uncharacterized protein n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067Q680_9AGAM)

HSP 1 Score: 84.7 bits (208), Expect = 8.550e-18
Identity = 41/61 (67.21%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 NAWYCPICKKHQPATKKLDLWKVPPVLIVHLKRFAGS----GKISCPVVFPLTGLDLSEVV 171
            + WYCP CKKHQ ATKK DLWKVP VL+VHLKRF+ S     KI   V FPL GLDLSE+V
Sbjct:  958 DLWYCPRCKKHQQATKKFDLWKVPDVLVVHLKRFSNSRVVRDKIDAFVDFPLEGLDLSEMV 1018          
BLAST of mRNA_H-fluviatilis_contig101017.274.1 vs. uniprot
Match: A0A0B2W064_TOXCA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2W064_TOXCA)

HSP 1 Score: 83.6 bits (205), Expect = 2.170e-17
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 NAWYCPICKKHQPATKKLDLWKVPPVLIVHLKRFA----GSGKISCPVVFPLTGLDLS 162
            N WYCP CK+HQ ATKKLDLW++PPVLIVHLKRF        KI  PV FPL+GLDL+
Sbjct:  702 NLWYCPRCKEHQRATKKLDLWRLPPVLIVHLKRFHFTRWSREKIDLPVEFPLSGLDLT 759          
BLAST of mRNA_H-fluviatilis_contig101017.274.1 vs. uniprot
Match: F1KVS2_ASCSU (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ascaris suum TaxID=6253 RepID=F1KVS2_ASCSU)

HSP 1 Score: 83.6 bits (205), Expect = 2.170e-17
Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 NAWYCPICKKHQPATKKLDLWKVPPVLIVHLKRFA----GSGKISCPVVFPLTGLDLSEVV 171
            N WYC  CK+HQ ATKKLDLWK+PPVLI+HLKRF        KI  PV FPLTGLDL+  V
Sbjct:  698 NLWYCSRCKEHQHATKKLDLWKLPPVLIIHLKRFHFTRWSREKIDIPVEFPLTGLDLTSRV 758          
BLAST of mRNA_H-fluviatilis_contig101017.274.1 vs. uniprot
Match: A0A183UDH3_TOXCA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183UDH3_TOXCA)

HSP 1 Score: 83.6 bits (205), Expect = 2.170e-17
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 NAWYCPICKKHQPATKKLDLWKVPPVLIVHLKRFA----GSGKISCPVVFPLTGLDLS 162
            N WYCP CK+HQ ATKKLDLW++PPVLIVHLKRF        KI  PV FPL+GLDL+
Sbjct:  740 NLWYCPRCKEHQRATKKLDLWRLPPVLIVHLKRFHFTRWSREKIDLPVEFPLSGLDLT 797          
BLAST of mRNA_H-fluviatilis_contig101017.274.1 vs. uniprot
Match: A0A4S4MAE0_9AGAM (Uncharacterized protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4MAE0_9AGAM)

HSP 1 Score: 83.6 bits (205), Expect = 2.180e-17
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 NAWYCPICKKHQPATKKLDLWKVPPVLIVHLKRFAGS----GKISCPVVFPLTGLDLSEVV 171
            + WYCP CKKHQ ATKK DLW VP VL+VHLKRF+ S     KI   V FPLTGLDL+E+V
Sbjct:  978 DPWYCPRCKKHQQATKKFDLWNVPDVLVVHLKRFSNSRALRDKIETFVDFPLTGLDLTEMV 1038          
BLAST of mRNA_H-fluviatilis_contig101017.274.1 vs. uniprot
Match: A0A1X6N729_9APHY (Uncharacterized protein n=2 Tax=Postia placenta TaxID=104341 RepID=A0A1X6N729_9APHY)

HSP 1 Score: 82.8 bits (203), Expect = 4.060e-17
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 NAWYCPICKKHQPATKKLDLWKVPPVLIVHLKRFAGS----GKISCPVVFPLTGLDLSEVV 171
            + WYCPICKKHQ ATK+ D+WKVP VL+VHLKRF+ S     KI   V FPL GLDLS +V
Sbjct:  875 DLWYCPICKKHQQATKRFDIWKVPDVLVVHLKRFSNSRMLRDKIDTFVDFPLEGLDLSPMV 935          
BLAST of mRNA_H-fluviatilis_contig101017.274.1 vs. uniprot
Match: H3ARA3_LATCH (Ubiquitin carboxyl-terminal hydrolase n=6 Tax=Latimeria chalumnae TaxID=7897 RepID=H3ARA3_LATCH)

HSP 1 Score: 81.6 bits (200), Expect = 1.030e-16
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 NAWYCPICKKHQPATKKLDLWKVPPVLIVHLKRFAGS----GKISCPVVFPLTGLDLSE 165
            + WYCP CK+HQ ATKKLDLW +PPVL+VHLKRF+ S     K+   VVFP+T LD+SE
Sbjct:  806 DPWYCPNCKQHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVVFPITDLDMSE 864          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig101017.274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7E8_ECTSI2.620e-2585.96USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A158PN45_ANISI1.480e-1965.57Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Anis... [more]
A0A8H6T2X4_9AGAR4.580e-1862.30Uncharacterized protein n=1 Tax=Mycena indigotica ... [more]
A0A067Q680_9AGAM8.550e-1867.21Uncharacterized protein n=1 Tax=Jaapia argillacea ... [more]
A0A0B2W064_TOXCA2.170e-1767.24Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Toxo... [more]
F1KVS2_ASCSU2.170e-1765.57Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Asca... [more]
A0A183UDH3_TOXCA2.170e-1767.24Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Toxo... [more]
A0A4S4MAE0_9AGAM2.180e-1765.57Uncharacterized protein n=1 Tax=Bondarzewia mesent... [more]
A0A1X6N729_9APHY4.060e-1763.93Uncharacterized protein n=2 Tax=Postia placenta Ta... [more]
H3ARA3_LATCH1.030e-1662.71Ubiquitin carboxyl-terminal hydrolase n=6 Tax=Lati... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig101017contigH-fluviatilis_contig101017:97..267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue8.2e-21
Seed eggNOG ortholog2880.D7G7E8
KEGG koko:K11833,ko:K11837,ko:K11839
KEGG Pathwayko04137,ko04144,ko04934,map04137,map04144,map04934
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0012505,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0097708
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1868@1,KOG1868@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929028.643098-CDS-H-fluviatilis_contig101017:96..2671622929028.643098-CDS-H-fluviatilis_contig101017:96..267Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101017 97..267 +
1691135155.9682844-CDS-H-fluviatilis_contig101017:96..2671691135155.9682844-CDS-H-fluviatilis_contig101017:96..267Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101017 97..267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig101017.274.1prot_H-fluviatilis_contig101017.274.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig101017 97..267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig101017.274.1

>prot_H-fluviatilis_contig101017.274.1 ID=prot_H-fluviatilis_contig101017.274.1|Name=mRNA_H-fluviatilis_contig101017.274.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=57bp
NAWYCPICKKHQPATKKLDLWKVPPVLIVHLKRFAGSGKISCPVVFPLTG
LDLSEVV
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mRNA from alignment at H-fluviatilis_contig101017:97..267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig101017.274.1 ID=mRNA_H-fluviatilis_contig101017.274.1|Name=mRNA_H-fluviatilis_contig101017.274.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=171bp|location=Sequence derived from alignment at H-fluviatilis_contig101017:97..267+ (Heribaudiella fluviatilis SAG_13_90)
AACGCGTGGTACTGTCCGATCTGCAAGAAGCATCAGCCGGCGACGAAAAA ATTGGATCTTTGGAAAGTTCCGCCGGTTTTGATCGTGCACCTCAAAAGAT TCGCCGGGAGCGGAAAGATATCTTGTCCAGTGGTGTTCCCCCTAACGGGA TTGGATCTGTCGGAGGTGGTC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig101017:97..267+

>mRNA_H-fluviatilis_contig101017.274.1 ID=mRNA_H-fluviatilis_contig101017.274.1|Name=mRNA_H-fluviatilis_contig101017.274.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=342bp|location=Sequence derived from alignment at H-fluviatilis_contig101017:97..267+ (Heribaudiella fluviatilis SAG_13_90)
AACGCGTGGTACTGTCCGATCTGCAAGAAGCATCAGCCGGCGACGAAAAA
ATTGGATCTTTGGAAAGTTCCGCCGGTTTTGATCGTGCACCTCAAAAGAT
TCGCCGGGAGCGGAAAGATATCTTGTCCAGTGGTGTTCCCCCTAACGGGA
TTGGATCTGTCGGAGGTGGTCAACGCGTGGTACTGTCCGATCTGCAAGAA
GCATCAGCCGGCGACGAAAAAATTGGATCTTTGGAAAGTTCCGCCGGTTT
TGATCGTGCACCTCAAAAGATTCGCCGGGAGCGGAAAGATATCTTGTCCA
GTGGTGTTCCCCCTAACGGGATTGGATCTGTCGGAGGTGGTC
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