mRNA_H-fluviatilis_contig100968.262.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100968.262.1
Unique NamemRNA_H-fluviatilis_contig100968.262.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig100968.262.1 vs. uniprot
Match: A0A6I1QUA2_9CHLR (AAA family ATPase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I1QUA2_9CHLR)

HSP 1 Score: 53.9 bits (128), Expect = 3.000e-5
Identity = 39/143 (27.27%), Postives = 67/143 (46.85%), Query Frame = 1 
Query:    1 LVVFIDEFDRLPDNA---LVGSVLKTFTK----VRFVVVGVAKTAETLIGSHPSVGRKLVGIEVPPFERSETEEVFRKATEVSESYPDSKGLQFSNAYVDRVHHDTGGYPNLIQKIGFHT----IKPDRLHREMFKHRVDIGL 396
            LVV +DEFDR+ D A   L+   +KT +        ++VGVA T + L+  H S+ R LV + +P    +E +++ R          D   +   +  + R+ H + G P+    +G H+    I   R+H  + +  V + L
Sbjct:  191 LVVIVDEFDRIEDEAVPRLMADTIKTLSDYLVDATLILVGVADTVDELVYEHGSIDRALVQVLMPRMSIAELQDIVRTRL-------DRVSMTIDSEVLHRLAHVSQGLPHYTHLLGLHSGVAAIDAGRMHVRIDELNVALHL 326
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BLAST of mRNA_H-fluviatilis_contig100968.262.1 vs. uniprot
Match: A0A845BAA0_9PROT (AAA_16 domain-containing protein n=2 Tax=Roseomonas coralli TaxID=2545983 RepID=A0A845BAA0_9PROT)

HSP 1 Score: 53.5 bits (127), Expect = 4.720e-5
Identity = 31/95 (32.63%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:    1 LVVFIDEFDRLPDNAL---VGSVLKTFTK----VRFVVVGVAKTAETLIGSHPSVGRKLVGIEVPPFERSETEEVFRKATEVSESYPDSKGLQFS 264
            L++ +DEFDRLP++A    +   +K  ++    V F++VG + +   L+  HPSV R +VG+++P     E EE+  +   +S       GL+FS
Sbjct:  676 LILMVDEFDRLPNDATRMRIADTIKLLSEHSASVFFLIVGASDSLTQLLDRHPSVQRNVVGVQLPLLTNGEVEEIVLRGGRLS-------GLEFS 763
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100968.262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6I1QUA2_9CHLR3.000e-527.27AAA family ATPase n=1 Tax=Dehalococcoidia bacteriu... [more]
A0A845BAA0_9PROT4.720e-532.63AAA_16 domain-containing protein n=2 Tax=Roseomona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100968contigH-fluviatilis_contig100968:299..844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size546
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.5656762-CDS-H-fluviatilis_contig100968:298..8441622929027.5656762-CDS-H-fluviatilis_contig100968:298..844Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100968 299..844 -
1691135155.3045535-CDS-H-fluviatilis_contig100968:298..8441691135155.3045535-CDS-H-fluviatilis_contig100968:298..844Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100968 299..844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100968.262.1prot_H-fluviatilis_contig100968.262.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100968 299..844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100968.262.1

>prot_H-fluviatilis_contig100968.262.1 ID=prot_H-fluviatilis_contig100968.262.1|Name=mRNA_H-fluviatilis_contig100968.262.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=182bp
LVVFIDEFDRLPDNALVGSVLKTFTKVRFVVVGVAKTAETLIGSHPSVGR
KLVGIEVPPFERSETEEVFRKATEVSESYPDSKGLQFSNAYVDRVHHDTG
GYPNLIQKIGFHTIKPDRLHREMFKHRVDIGLEHYKPALKAMFKPSKNRA
ASEEEVERRISEAVGDSDRRLMILRALVACGM
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mRNA from alignment at H-fluviatilis_contig100968:299..844-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100968.262.1 ID=mRNA_H-fluviatilis_contig100968.262.1|Name=mRNA_H-fluviatilis_contig100968.262.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=546bp|location=Sequence derived from alignment at H-fluviatilis_contig100968:299..844- (Heribaudiella fluviatilis SAG_13_90)
CTCGTCGTGTTCATCGACGAATTCGACCGCCTGCCTGACAACGCGCTCGT
GGGCAGCGTCCTGAAGACCTTCACCAAGGTGAGGTTCGTCGTGGTCGGCG
TGGCGAAGACGGCGGAGACGCTTATCGGATCCCATCCGTCGGTCGGCCGC
AAGCTGGTCGGAATCGAAGTTCCGCCTTTCGAGCGGAGTGAAACCGAGGA
AGTCTTCCGCAAAGCCACCGAGGTTTCGGAGAGTTACCCGGACTCCAAGG
GTCTTCAATTTTCGAACGCCTATGTCGATCGCGTCCACCACGATACCGGC
GGCTACCCCAATCTCATCCAGAAGATCGGGTTTCACACGATCAAGCCCGA
CCGGCTGCACCGGGAGATGTTCAAGCACAGGGTCGATATCGGCCTTGAAC
ATTACAAGCCCGCGCTCAAGGCGATGTTCAAACCCAGCAAGAACCGCGCC
GCCTCTGAAGAGGAAGTTGAACGGCGGATATCCGAGGCCGTCGGCGACTC
CGACCGGCGATTGATGATCCTTCGGGCCCTGGTGGCCTGCGGGATG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100968:299..844-

>mRNA_H-fluviatilis_contig100968.262.1 ID=mRNA_H-fluviatilis_contig100968.262.1|Name=mRNA_H-fluviatilis_contig100968.262.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1092bp|location=Sequence derived from alignment at H-fluviatilis_contig100968:299..844- (Heribaudiella fluviatilis SAG_13_90)
CTCGTCGTGTTCATCGACGAATTCGACCGCCTGCCTGACAACGCGCTCGT
GGGCAGCGTCCTGAAGACCTTCACCAAGGTGAGGTTCGTCGTGGTCGGCG
TGGCGAAGACGGCGGAGACGCTTATCGGATCCCATCCGTCGGTCGGCCGC
AAGCTGGTCGGAATCGAAGTTCCGCCTTTCGAGCGGAGTGAAACCGAGGA
AGTCTTCCGCAAAGCCACCGAGGTTTCGGAGAGTTACCCGGACTCCAAGG
GTCTTCAATTTTCGAACGCCTATGTCGATCGCGTCCACCACGATACCGGC
GGCTACCCCAATCTCATCCAGAAGATCGGGTTTCACACGATCAAGCCCGA
CCGGCTGCACCGGGAGATGTTCAAGCACAGGGTCGATATCGGCCTTGAAC
ATTACAAGCCCGCGCTCAAGGCGATGTTCAAACCCAGCAAGAACCGCGCC
GCCTCTGAAGAGGAAGTTGAACGGCGGATATCCGAGGCCGTCGGCGACTC
CGACCGGCGATTGATGATCCTTCGGGCCCTGGTGGCCTGCGGGATGCTCG
TCGTGTTCATCGACGAATTCGACCGCCTGCCTGACAACGCGCTCGTGGGC
AGCGTCCTGAAGACCTTCACCAAGGTGAGGTTCGTCGTGGTCGGCGTGGC
GAAGACGGCGGAGACGCTTATCGGATCCCATCCGTCGGTCGGCCGCAAGC
TGGTCGGAATCGAAGTTCCGCCTTTCGAGCGGAGTGAAACCGAGGAAGTC
TTCCGCAAAGCCACCGAGGTTTCGGAGAGTTACCCGGACTCCAAGGGTCT
TCAATTTTCGAACGCCTATGTCGATCGCGTCCACCACGATACCGGCGGCT
ACCCCAATCTCATCCAGAAGATCGGGTTTCACACGATCAAGCCCGACCGG
CTGCACCGGGAGATGTTCAAGCACAGGGTCGATATCGGCCTTGAACATTA
CAAGCCCGCGCTCAAGGCGATGTTCAAACCCAGCAAGAACCGCGCCGCCT
CTGAAGAGGAAGTTGAACGGCGGATATCCGAGGCCGTCGGCGACTCCGAC
CGGCGATTGATGATCCTTCGGGCCCTGGTGGCCTGCGGGATG
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