mRNA_H-fluviatilis_contig100943.259.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100943.259.1
Unique NamemRNA_H-fluviatilis_contig100943.259.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100943.259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100943contigH-fluviatilis_contig100943:32..812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size589
Cds size546
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.2390447-UTR-H-fluviatilis_contig100943:31..401622929027.2390447-UTR-H-fluviatilis_contig100943:31..40Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100943 32..40 +
1691135155.0999687-UTR-H-fluviatilis_contig100943:31..401691135155.0999687-UTR-H-fluviatilis_contig100943:31..40Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100943 32..40 +
1622929027.318607-UTR-H-fluviatilis_contig100943:778..8121622929027.318607-UTR-H-fluviatilis_contig100943:778..812Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100943 779..812 +
1691135155.1774142-UTR-H-fluviatilis_contig100943:778..8121691135155.1774142-UTR-H-fluviatilis_contig100943:778..812Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100943 779..812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.2574522-CDS-H-fluviatilis_contig100943:40..791622929027.2574522-CDS-H-fluviatilis_contig100943:40..79Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100943 41..79 +
1691135155.1074638-CDS-H-fluviatilis_contig100943:40..791691135155.1074638-CDS-H-fluviatilis_contig100943:40..79Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100943 41..79 +
1622929027.269956-CDS-H-fluviatilis_contig100943:133..3431622929027.269956-CDS-H-fluviatilis_contig100943:133..343Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100943 134..343 +
1691135155.1147943-CDS-H-fluviatilis_contig100943:133..3431691135155.1147943-CDS-H-fluviatilis_contig100943:133..343Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100943 134..343 +
1622929027.2829223-CDS-H-fluviatilis_contig100943:389..4831622929027.2829223-CDS-H-fluviatilis_contig100943:389..483Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100943 390..483 +
1691135155.1246912-CDS-H-fluviatilis_contig100943:389..4831691135155.1246912-CDS-H-fluviatilis_contig100943:389..483Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100943 390..483 +
1622929027.2932544-CDS-H-fluviatilis_contig100943:525..6031622929027.2932544-CDS-H-fluviatilis_contig100943:525..603Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100943 526..603 +
1691135155.135612-CDS-H-fluviatilis_contig100943:525..6031691135155.135612-CDS-H-fluviatilis_contig100943:525..603Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100943 526..603 +
1622929027.3058875-CDS-H-fluviatilis_contig100943:653..7781622929027.3058875-CDS-H-fluviatilis_contig100943:653..778Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100943 654..778 +
1691135155.1591692-CDS-H-fluviatilis_contig100943:653..7781691135155.1591692-CDS-H-fluviatilis_contig100943:653..778Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100943 654..778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100943.259.1prot_H-fluviatilis_contig100943.259.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100943 41..778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100943.259.1

>prot_H-fluviatilis_contig100943.259.1 ID=prot_H-fluviatilis_contig100943.259.1|Name=mRNA_H-fluviatilis_contig100943.259.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=182bp
MVSLAESERKWWQQTQPHMAAPNSRRSRRRASHLARRNAAASASASASST
SSVSAPSSSSHSSSSTSSTSSTSAVRRDERKTVSTKKDRHWWKGKKVEMA
AKRDGPLAVPTRDHATKRARTRNRKLRHSLGWVYPCLSIDGRAPVAVEHL
QLRGTDFSPVHPSTSTSLTLSSSSSSSVSVR*
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mRNA from alignment at H-fluviatilis_contig100943:32..812+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100943.259.1 ID=mRNA_H-fluviatilis_contig100943.259.1|Name=mRNA_H-fluviatilis_contig100943.259.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=781bp|location=Sequence derived from alignment at H-fluviatilis_contig100943:32..812+ (Heribaudiella fluviatilis SAG_13_90)
GCGGCGGCCATGGTTTCCCTGGCAGAATCGGAACGCAAATGGTGGCAGGT
GTGTGGTGGTTGCGGGTGTGTGCATGTGTATTACACATGTATCTGTACGT
AGCAAACACAGCCGCACATGGCCGCGCCCAACTCCCGGCGTTCGCGGCGT
CGTGCATCGCACCTTGCCCGTCGTAACGCCGCTGCCTCGGCATCCGCATC
CGCATCCTCGACCTCATCCGTGTCTGCCCCTTCGTCTTCCTCCCACTCCT
CGTCCTCCACATCATCCACTTCATCCACTTCGGCGGTTCGACGAGACGAA
CGCAAAACCGTGGTCAGACTGACCGTCCGACATGTGTTGATTGCACGATT
TCGTGTAGAGTACCAAAAAAGACCGTCATTGGTGGAAAGGCAAGAAAGTG
GAAATGGCTGCCAAGAGAGACGGACCCTTGGCTGTGCCTACACGTGATCA
CGGTTTGTGCAGATCGTCGCGGGGCTGACGGGTGTCTTGTGCAGCAACTA
AACGTGCGCGTACTCGGAACCGCAAACTGCGGCACTCGTTGGGCTGGGTG
TATCCGTGCCTCTCCATCGATGGTGCGTTCACGCTAGTGGACGCTCACGA
AACCTGCTGCACATTTTATTAGGTCGGGCGCCGGTTGCTGTCGAACACTT
GCAACTTCGTGGCACAGACTTTTCTCCTGTTCACCCGTCGACATCCACCT
CTTTGACCTTGTCGTCTAGTTCGTCTTCAAGCGTGTCTGTTCGTTGAATT
GTTATGGATTCATCTATAAATTTGTTCGGCG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100943:32..812+

>mRNA_H-fluviatilis_contig100943.259.1 ID=mRNA_H-fluviatilis_contig100943.259.1|Name=mRNA_H-fluviatilis_contig100943.259.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1092bp|location=Sequence derived from alignment at H-fluviatilis_contig100943:32..812+ (Heribaudiella fluviatilis SAG_13_90)
ATGGTTTCCCTGGCAGAATCGGAACGCAAATGGTGGCAGATGGTTTCCCT
GGCAGAATCGGAACGCAAATGGTGGCAGCAAACACAGCCGCACATGGCCG
CGCCCAACTCCCGGCGTTCGCGGCGTCGTGCATCGCACCTTGCCCGTCGT
AACGCCGCTGCCTCGGCATCCGCATCCGCATCCTCGACCTCATCCGTGTC
TGCCCCTTCGTCTTCCTCCCACTCCTCGTCCTCCACATCATCCACTTCAT
CCACTTCGGCGGTTCGACGAGACGAACGCAAAACCGTGCAAACACAGCCG
CACATGGCCGCGCCCAACTCCCGGCGTTCGCGGCGTCGTGCATCGCACCT
TGCCCGTCGTAACGCCGCTGCCTCGGCATCCGCATCCGCATCCTCGACCT
CATCCGTGTCTGCCCCTTCGTCTTCCTCCCACTCCTCGTCCTCCACATCA
TCCACTTCATCCACTTCGGCGGTTCGACGAGACGAACGCAAAACCGTGAG
TACCAAAAAAGACCGTCATTGGTGGAAAGGCAAGAAAGTGGAAATGGCTG
CCAAGAGAGACGGACCCTTGGCTGTGCCTACACGTGATCACGAGTACCAA
AAAAGACCGTCATTGGTGGAAAGGCAAGAAAGTGGAAATGGCTGCCAAGA
GAGACGGACCCTTGGCTGTGCCTACACGTGATCACGCAACTAAACGTGCG
CGTACTCGGAACCGCAAACTGCGGCACTCGTTGGGCTGGGTGTATCCGTG
CCTCTCCATCGATGCAACTAAACGTGCGCGTACTCGGAACCGCAAACTGC
GGCACTCGTTGGGCTGGGTGTATCCGTGCCTCTCCATCGATGGTCGGGCG
CCGGTTGCTGTCGAACACTTGCAACTTCGTGGCACAGACTTTTCTCCTGT
TCACCCGTCGACATCCACCTCTTTGACCTTGTCGTCTAGTTCGTCTTCAA
GCGTGTCTGTTCGTTGAGTCGGGCGCCGGTTGCTGTCGAACACTTGCAAC
TTCGTGGCACAGACTTTTCTCCTGTTCACCCGTCGACATCCACCTCTTTG
ACCTTGTCGTCTAGTTCGTCTTCAAGCGTGTCTGTTCGTTGA
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