mRNA_H-fluviatilis_contig10062.193.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10062.193.1
Unique NamemRNA_H-fluviatilis_contig10062.193.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: A0A6H5KJB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB0_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 1.520e-104
Identity = 161/199 (80.90%), Postives = 176/199 (88.44%), Query Frame = 2 
Query:  731 VLPALATRDQWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRGRIADVPGGDGNSVAIFSARVASATEEYHPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLANRDSKR 1327
            VLP LATRDQW+HYWGGSD+QRVGK FEV+A+AFLGLWACYF SFFLGV T ++IG +FLFYWLLAPNVT+FRRN ALRG IA  PG  GNSVAIFSARV SA EEYHPVTG+PVFLRMVI D +GRALKFRTRTR EYAR+R GM AEAVLVSPDE FEEI+GVSDTFIP AN+WVGEYPY+DKVVM RLLA+RD KR
Sbjct:    2 VLPVLATRDQWSHYWGGSDVQRVGKLFEVAAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALRGSIAPFPGARGNSVAIFSARVVSAVEEYHPVTGQPVFLRMVIEDEDGRALKFRTRTRAEYARVRPGMAAEAVLVSPDERFEEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKR 200
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BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: D8LTW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW7_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 1.690e-89
Identity = 152/214 (71.03%), Postives = 169/214 (78.97%), Query Frame = 2 
Query:  776 GGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRGRIADVPGGDGNSVAIFSARVASATEEYHPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLANRDSKRRQKGVDSSIGSETGDEDEYSELDTSSYYDA 1417
            G    QRVGK FEV+A+AFLGLWACYF SFFLGV T ++IG +FLFYWLLAPNVT+FRRN AL+G IA  PG  GNSVAIFSARVASA EEYHPVTG+PVFLRMVI D +GRALKFRTRTR EYAR+R GM AEA+LVSPDE FEEI+GVSDTFIP AN+WVGEYPY+DKVVM RLLA+RD KR              D DE  ELD  +Y D+
Sbjct:   21 GVPTSQRVGKLFEVAAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALKGSIAPFPGARGNSVAIFSARVASAVEEYHPVTGQPVFLRMVIEDEDGRALKFRTRTRAEYARVRPGMAAEAILVSPDERFEEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKRXXXXXX------XXDADEDEELDPITYRDS 228
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BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: A0A835YT15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT15_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.660e-48
Identity = 93/187 (49.73%), Postives = 126/187 (67.38%), Query Frame = 2 
Query:  761 WAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRGRIADVPGGDGNSVAIFSARVASATEEYHPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVS--PDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLANR 1315
            W +YWG   +QR GK  E  ++AFLG+WACYFTSFFLGV  TS+IG  F+FYWLL PN+  +R+N   RG++A  P   G   A+FSA +A+  EE +P+TGK   LR+ +AD EGRAL  R     E AR+  GM  E +L+S  P   FE+I+GVSD +IP  ++WVG+YP+++K+ + RLL  R
Sbjct:    8 WNNYWG-EGVQRAGKVAESFSVAFLGVWACYFTSFFLGVAITSVIGVVFVFYWLLGPNLLNYRKNWEFRGKLAPSPKEPGTRAALFSASIANVVEEVNPITGKAANLRLEVADEEGRALMLRVPAVREAARVEAGMGIEVLLISDEPGGGFEDILGVSDAYIPAIDLWVGDYPHLNKLALRRLLNER 193
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BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: K8Z4B4_NANGC (Putative membrane protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z4B4_NANGC)

HSP 1 Score: 171 bits (433), Expect = 5.560e-44
Identity = 103/282 (36.52%), Postives = 147/282 (52.13%), Query Frame = 2 
Query:  527 HTTQLLRHARGLGRRTTTCKVPRARAFAQSTHGGSVFGLSPTRR-----RRRPRALNDLRCELTRLSGDAGHKVLPALATRDQWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRGR-IADVPGGDGNSVAIFSARVASA-----TEEYHPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLANRDSKRRQKG 1339
            HT  +  +     R  ++C VP     A S+ G      +P  R     R R R L    C LT L      ++LP+  T DQW +YWG ++  + GK +E ++  F GLW  +F +F +G+   +++G  FLFYW+LAP + A+RRN++ RG   A  P  DG   A+FS RV          EY+    +P  L M + D  GR L+      P Y ++R GM  E +++S    F+E++GVSD F+PD   WVGEYPYIDKV     LA+R  +R   G
Sbjct:   22 HTLPMSAYICVPARPVSSCMVPAFSHPAYSSRGRGHITSAPQVRNIAQERHRSRGLAS--CSLTVLRDRTLRRLLPSQFTGDQWKYYWGITESDKFGKIYEAASATFFGLWTSWFLTFLIGLPAATVLGTVFLFYWILAPGLAAYRRNVSFRGTYFARTPRDDGVFGALFSGRVVRVGRIRQAREYN----RPEALVMSMEDESGRKLRVYAPILPSYKKVRPGMRCEGLVLSESPDFDELMGVSDVFVPDCGAWVGEYPYIDKVPFKAFLASRARRRGGMG 297
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BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: K8Z4E0_NANGC (Putative membrane protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z4E0_NANGC)

HSP 1 Score: 169 bits (427), Expect = 1.380e-43
Identity = 94/247 (38.06%), Postives = 135/247 (54.66%), Query Frame = 2 
Query:  617 THGGSVFGLSPTRRRRRPRALNDLRCELTRLSGDAGHKVLPALATRDQWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRGR-IADVPGGDGNSVAIFSARVASA-----TEEYHPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLANRDSKRRQKG 1339
            T G  +   +  + R R R L    C LT L      ++LP+  T DQW +YWG ++  + GK +E ++  F GLW  +F +F +G+   +++G  FLFYW+LAP + A+RRN++ RG   A  P  DG   A+FS RV          EY+    +P  L M + D  GR L+      P Y ++R GM  E +++S    F+E++GVSD F+PD   WVGEYPYIDKV     LA+R  +R   G
Sbjct:    4 TCGSGLVVRNIAQERHRSRGLAS--CSLTVLRDRTLRRLLPSQFTGDQWKYYWGITESDKFGKIYEAASATFFGLWTSWFLTFLIGLPAATVLGTVFLFYWILAPGLAAYRRNVSFRGTYFARTPRDDGVFGALFSGRVVRVGRIRQAREYN----RPEALVMSMEDESGRKLRVYAPILPSYKKVRPGMRCEGLVLSESPDFDELMGVSDVFVPDCGAWVGEYPYIDKVPFKAFLASRARRRGGMG 244
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BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: A0A6U4L5P1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L5P1_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.110e-28
Identity = 67/192 (34.90%), Postives = 100/192 (52.08%), Query Frame = 2 
Query:  731 VLPALAT----RDQWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRGRIADVPGGDGN-----SVAIFSARVASATEEYHPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYI 1279
             L  LAT    +DQW H+WG ++M R  + FEV+ ++F GLW  +F +F +G    ++IG  F F+ L+AP   A RRN   R  + D              A+FS R+         + G+   L++ + D +GR L+ R      +A + EG +  A+++S D +F  I  VSD FIP A  W GEYPY+
Sbjct:   98 TLERLATQSVSKDQWLHFWGSNEMARASRIFEVALVSFFGLWTTWFLNFAIGPTVGTLIGTVFAFWGLIAPYFAAARRNADFREGLLDSFSSVWRPKRPLKTALFSGRIVRCERVVSDLKGRRFMLKLELEDEDGRLLQVRAPLHDRHADVMEGQLGLALMISEDPSFSTIERVSDVFIPAAQTWAGEYPYV 289
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BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: A0A7S3P7K6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7K6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.490e-25
Identity = 80/257 (31.13%), Postives = 128/257 (49.81%), Query Frame = 2 
Query:  641 LSPTRRRRRPRALNDLRCELTRLSGDAGHKVLPA-LATRDQWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRN---LALRGRIADVPGGDGNSVAIFSA------------RVASATEEY---------------HPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLANRD 1318
            L P +RRRR  A   L   L  L  +   ++L     T +Q+A YWG +  +R G+  E S ++FLG++  YF SF +G    +I+G  F F+ +L+P   A +RN   L  R  +    GGD +   ++ A              ++ T EY                  TG+P  LR+ + D +GR L+  TR   EY  I+  M   A+L+S    F+++  ++D F+P+A+ W+G+YPY+++V +  LLA  D
Sbjct:   76 LYPNKRRRRT-ATFALEMALVPLPSEELEQLLSVGPPTGEQYATYWGRTPQERYGRILESSIVSFLGVFFSYFLSFVMGGFVATILGTLFFFWGILSPQFKAAQRNWEFLGGRQLVDPWKGGDPDGAGLYGALYLGFVDDVCVVEQSTDTREYDLADFEDYTMETDDLEQYTGEPYLLRVRLRDSKGRELQIHTRMSEEYLDIQTKMPVMAILLSTRRKFDKLAAITDLFVPEADCWIGDYPYLNRVEVQSLLAEDD 331
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BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: A0A7S2UD74_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD74_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.990e-22
Identity = 80/268 (29.85%), Postives = 124/268 (46.27%), Query Frame = 2 
Query:  626 GSVFGLSPTRRRRRPRALN-DLRCELTRLSGDAGHKVLPA--LATRDQWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRG-RIADVPGGDGNS--------------------VAIFSARVASATEEY---------------HPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLAN 1312
            G+ F +S   + RR R  + +L   L  +  +   ++L +  L T  Q+  YWG +  +     FE + +  LGL+  YF SF LG    +++   F  + +LAP + A++RN  LRG R    P  D +                     VA+    +A+  +EY                 + G P  LR+ + D  GR L+   R   EY  I EGM    VL+S  + F ++ G++D  IPDA  WVG+YPY+D+ +  R+LAN
Sbjct:   62 GNYFTISSVGKGRRGRGYSSELNMALIPIPVETMGRLLSSGTLPTPAQYGAYWGRTSRETYAGLFESANVTVLGLFCAYFLSFILGQFVATLVSFVFAAWIILAPQLKAYQRNWELRGGRDLVDPWSDYDDDIAPDKRGLYGAYYFGHVVHVAVVENPIATDEDEYDIRDFQDYTMEGDELEQLMGLPYQLRLRVCDCNGRELQVHARMSEEYLDISEGMPVACVLLSTSQDFVQLAGMTDMCIPDAECWVGDYPYLDRPLFERMLAN 329
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BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: A0A1Z5JCW8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCW8_FISSO)

HSP 1 Score: 103 bits (257), Expect = 1.120e-20
Identity = 67/225 (29.78%), Postives = 109/225 (48.44%), Query Frame = 2 
Query:  749 TRDQWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLA-LRGR-IADV--------PGGDGNSVAIFSARVASAT-----------------------EEYHPVTGKPVFLRMVIADGEGRALKFRTRTRPEYA--RIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLANRD 1318
            T  Q++ Y G +  +R G+  E S + FLG++  YF SF +G    +++G  F F+ +L+P   A++RN   L GR + D+        P   G   A+F   +A                          +E   +TG+P  LR++  D  GR L+  TR   EY    +  G+   A+L+S    F  + G++D ++PD N+W+G+YPY+D+  M  +LA  D
Sbjct:   42 TGAQYSVYIGRTPRERFGRLIESSIVGFLGVFFSYFLSFVIGGFFATLLGCIFFFWGILSPEFQAYQRNWEFLGGRPLVDMEDTAAKKDPDKTGLYSALFVGHLADLAVVEDAISDVEYDLDDFRDYTMDGDELEKLTGRPYLLRVLARDRTGRELQIHTRMSEEYVDGALETGLPVTAILLSTKRNFSRLAGITDLYVPDVNLWLGDYPYLDREHMEAMLAEDD 266
[Close]
BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: A0A7S0CDT2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDT2_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.970e-20
Identity = 67/233 (28.76%), Postives = 105/233 (45.06%), Query Frame = 2 
Query:  758 QWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRG-------------------------RIADVPGGDGNSVAIFSARVASA----------TEEY---------------HPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLL 1306
            Q+  YWG +  +     FE  A+  LGL+  YF SF +G G  +++GA F F+ LL P + A++RN    G                            +  G  G   + + A V++           +EEY                 +TG P  +R+ I D  GR+++   R   EY  I+EG     V +S D +FE + G++D F+PDA  +VG+YPY+D+  + R+L
Sbjct:  115 QYGTYWGRTSRETYNAVFESVAVTVLGLFGSYFLSFVIGDGLATLMGAVFAFWTLLGPELKAYQRNWEFVGGRPLIDQWMDDEIMDNTFDIFGDEKEKGERAGNGGMYGSYYIAHVSNVGVVGNVNVLPSEEYPLSEFYDYTMEKDDAERITGLPWMIRLRIKDNSGRSMQVHARMSEEYLDIQEGQPVVCVFLSSDRSFEMLSGLTDFFVPDAGCYVGDYPYLDRPYLNRML 347
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJB0_9PHAE1.520e-10480.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTW7_ECTSI1.690e-8971.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YT15_9STRA2.660e-4849.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8Z4B4_NANGC5.560e-4436.52Putative membrane protein n=3 Tax=Monodopsidaceae ... [more]
K8Z4E0_NANGC1.380e-4338.06Putative membrane protein n=1 Tax=Nannochloropsis ... [more]
A0A6U4L5P1_9STRA3.110e-2834.90Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3P7K6_9STRA1.490e-2531.13Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2UD74_9STRA5.990e-2229.85Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A1Z5JCW8_FISSO1.120e-2029.78Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S0CDT2_9STRA5.970e-2028.76Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10062contigH-fluviatilis_contig10062:1867..6016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.9
Seed ortholog evalue1.3e-76
Seed eggNOG ortholog2880.D8LTW7
EggNOG OGs2E2W9@1,2SA2H@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons7
Model size1762
Cds size1377
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10062.193.1prot_H-fluviatilis_contig10062.193.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10062 2252..6016 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.2707968-UTR-H-fluviatilis_contig10062:1866..22511622929017.2707968-UTR-H-fluviatilis_contig10062:1866..2251Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10062 1867..2251 +
1691135151.3425565-UTR-H-fluviatilis_contig10062:1866..22511691135151.3425565-UTR-H-fluviatilis_contig10062:1866..2251Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10062 1867..2251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.28835-CDS-H-fluviatilis_contig10062:2251..25291622929017.28835-CDS-H-fluviatilis_contig10062:2251..2529Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10062 2252..2529 +
1691135151.3526912-CDS-H-fluviatilis_contig10062:2251..25291691135151.3526912-CDS-H-fluviatilis_contig10062:2251..2529Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10062 2252..2529 +
1622929017.3062809-CDS-H-fluviatilis_contig10062:3022..32601622929017.3062809-CDS-H-fluviatilis_contig10062:3022..3260Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10062 3023..3260 +
1691135151.3618035-CDS-H-fluviatilis_contig10062:3022..32601691135151.3618035-CDS-H-fluviatilis_contig10062:3022..3260Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10062 3023..3260 +
1622929017.322485-CDS-H-fluviatilis_contig10062:3659..38061622929017.322485-CDS-H-fluviatilis_contig10062:3659..3806Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10062 3660..3806 +
1691135151.370978-CDS-H-fluviatilis_contig10062:3659..38061691135151.370978-CDS-H-fluviatilis_contig10062:3659..3806Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10062 3660..3806 +
1622929017.3591816-CDS-H-fluviatilis_contig10062:4317..44551622929017.3591816-CDS-H-fluviatilis_contig10062:4317..4455Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10062 4318..4455 +
1691135151.3794386-CDS-H-fluviatilis_contig10062:4317..44551691135151.3794386-CDS-H-fluviatilis_contig10062:4317..4455Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10062 4318..4455 +
1622929017.3741236-CDS-H-fluviatilis_contig10062:5174..52731622929017.3741236-CDS-H-fluviatilis_contig10062:5174..5273Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10062 5175..5273 +
1691135151.3900158-CDS-H-fluviatilis_contig10062:5174..52731691135151.3900158-CDS-H-fluviatilis_contig10062:5174..5273Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10062 5175..5273 +
1622929017.3873599-CDS-H-fluviatilis_contig10062:5506..58921622929017.3873599-CDS-H-fluviatilis_contig10062:5506..5892Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10062 5507..5892 +
1691135151.3987722-CDS-H-fluviatilis_contig10062:5506..58921691135151.3987722-CDS-H-fluviatilis_contig10062:5506..5892Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10062 5507..5892 +
1622929017.4007561-CDS-H-fluviatilis_contig10062:5925..60161622929017.4007561-CDS-H-fluviatilis_contig10062:5925..6016Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10062 5926..6016 +
1691135151.408295-CDS-H-fluviatilis_contig10062:5925..60161691135151.408295-CDS-H-fluviatilis_contig10062:5925..6016Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10062 5926..6016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10062.193.1

>prot_H-fluviatilis_contig10062.193.1 ID=prot_H-fluviatilis_contig10062.193.1|Name=mRNA_H-fluviatilis_contig10062.193.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=459bp
MAHGKLTALPFSVVPVSLGAAAAAGGAFRDVPPVMPPVAFSQFPAATHTT
QLLRHARGLGRRTTTCKVPRARAFAQSTHGGSVFGLSPTRRRRRPRALND
LRCELTRLSGDAGHKVLPALATRDQWAHYWGGSDMQRVGKFFEVSAIAFL
GLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRGRIADV
PGGDGNSVAIFSARVASATEEYHPVTGKPVFLRMVIADGEGRALKFRTRT
RPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDK
VVMLRLLANRDSKRRQKGVDSSIGSETGDEDEYSELDTSSYYDALRSKQE
EEERRKLGLGSTRRPDIASSSRTSSRSGSNVSDFYSDSDYGLDSEHYHGE
EGADKPHYKGWDSAGFTSESRDPRRGRSSSGAVGGAGDGPKRKQHWERVS
AKPRSRGVP
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mRNA from alignment at H-fluviatilis_contig10062:1867..6016+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10062.193.1 ID=mRNA_H-fluviatilis_contig10062.193.1|Name=mRNA_H-fluviatilis_contig10062.193.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=4150bp|location=Sequence derived from alignment at H-fluviatilis_contig10062:1867..6016+ (Heribaudiella fluviatilis SAG_13_90)
GTCGCGCAACACCTTCTGTCCATCTCACCACGCGATTCAGGGCAGTTGAA
TTACCGGGGAGAGCACAAGTTTGACTTCAGGCGATCAAATTGGGGAAGTT
ACGGGGGTGTCGAGAGTCGACGAGATTCCCCTGTTGTGAGAGGTCCCTCA
CCCTGAAACAGGCTGAACCGTAGGGCTAACTACGGTTAAACCCTAGAATA
CAATTGGGCCGAATCAGCTCAAATACAGAGGCGGAATCGAGATGGGAACT
AGCCGGATTTGTTTATTTGGTTCTGGATGATGGCAATGGCATAAAATTCA
AGACTCGATCGTGGAACCTGCCCTGGTTGAAAGTCTACTTCAATCGCGGT
GAGGGTACGACTTGACGGGACACTACAGGGCTCCCATGGCGCACGGGAAA
TTGACGGCATTACCTTTCTCCGTTGTTCCTGTTTCTCTGGGAGCGGCGGC
GGCGGCGGGAGGAGCTTTCAGGGACGTTCCGCCTGTGATGCCCCCCGTGG
CTTTCTCTCAGTTTCCAGCTGCAACACATACAACACAGTTGCTGAGACAC
GCACGAGGGCTTGGACGCCGCACGACAACTTGTAAAGTGCCCAGGGCGAG
GGCTTTTGCCCAGTCGACGCACGGCGGCAGCGTGTTTGGCTTGTCGCCAA
CGAGGAGAAGGAGGTAAGCATGAGTTGATCTGGTGAAAGGTCGGGGGTGG
TGCCCACAAGCCCGCAGGGCGGACTGTCTTGTACTGACTGTACCTTTCCT
ACGGTGCTATGTTCTGCGAGTTAAGGGGTCGAAGTCCCTCACGGTTTCGT
TTGCGGCTACCTTACGGACTATTGTGGCATTGCTTTATCGCCTGCTGTTT
TCAATCTGTTGTTGAACACAGGCCGCGTCGAAATGCTCGCCCTTGCTTGC
AAAAACGTGTTCATGAAGCAGTATGATCGATTCAGCGTCGATGCGTGCAC
AACTCTTCTGACCTAACACTGCCTGCAGACGCTCAACAAATGCGAGGGAC
TGTTCGGCGGATTCCCCCCGTCCGTTGCGCCGCCCACCTGCCGCAGCTGC
CCCACGGCAGCATAGCATGCCACATACTCTCTTGGTTGCGCAGACGATCT
TACATAATCGCATCCCCCAAATATCTGACCACAACTTTGATCTCTAATGA
TAATAGGCGTCCTCGGGCATTGAACGATCTTCGTTGTGAGCTGACCCGTC
TATCAGGGGACGCTGGACACAAGGTGCTGCCTGCCCTCGCAACAAGGGAC
CAGTGGGCGCACTACTGGGGAGGGTCCGACATGCAGCGCGTGGGCAAGTT
TTTCGAGGTATCAGCCATCGCCTTCCTGGGGCTGTGGGCGTGCTACTTCA
CGAGCTTTTTCTTGGGCGTTGGCACGACGTCGATCATTGGAGCGGTGAGT
GTGCCCAGACGGAGAGTGAGGTGTGCGTGAGCACATTTCTCAGAAGAGGG
CTTGTTAGCACACCGAGAGCTTGCGACCTAGGCTCACAGTATGCGCGTTG
GGCGCAATTTTTCACTTTTTTCACCCTGCCGTTTTAAATCTACTCTGCAG
TATGCTCTGCAGTACGCTATGGCGAAGCATTCTGCAGCAGTTTGGTGTGG
CTCTGTCGAACCGCGGGTAGCGTTGTTTTGTCTGCCCGAACGAACTACGG
TACCTGAGCCAGCTCTCATGTGGAAGTCGCAACAACACTTCAAACCGATT
GTTTGTACCGCACTTCCTTGCTTTCCGTGTTCGCGTCACCAATCCATCAA
TATCGCGGCGACTTGCACTCCTGCTTTTCCCCGCTGCTCACAGGCTTTTC
TGTTTTACTGGCTACTCGCGCCAAATGTCACTGCGTTCCGCCGGAATCTG
GCATTACGAGGGAGGATTGCAGACGTTCCGGGAGGAGATGGCAACTCTGT
GGCAATTTTTAGCGCTCGAGTGGCTAGTGCAACAGAGGAGGTAAGATGCT
GTCTATTTCAATCCGCCTGCGGTCTTGTGCTGCGTCGCTGTGAGTTTGTG
AAGTCGGATTAGTCCTCTAGAATTCCGCTGCACATGCGGAATCAATCGCA
CACGCGGGGGTTGGATTTTTCTGAGGCTCCAACTGCGTCTCGGCCACGCG
CTTTTTCCAAAATTTGGACGATGAAACGCTAAAACGAGATGGTGTGTAGC
AGGGCAATAGACGAACAGAGCAACACGGACCGTGATACGGTGGTTTTGTA
CGACCTTGGCTGGGGTATTGGTGTAAAGTCAGCAACTTCAACCCTCAAAG
TCTCGACAAAAACCATCAACAGACGAAACGTCCAGTTCCCGTGCAACGTT
GCTCATCGATACAGTTTTGGTTGTGTGCATACGCTCGGACGCTGCGCCAT
CTGGTGTGGTCGATGGCCTTGGTGCAGCCGCACCCTCCATTTCAAAAGGT
GAATCGATATTTCTGGATGAACCCGTGCATTCCCGGGCTTACTCAACGCA
GTACCATCCCGTGACCGGAAAACCGGTTTTTCTGCGCATGGTGATCGCGG
ACGGAGAAGGCAGGGCCCTGAAGTTTCGCACTCGTACCAGGCCTGAATAC
GCGCGGATTCGAGAAGGCATGGTTGCCGAAGCCGTATTGGTGAGAGCGCA
TGGAGTACGGAGAGGAGCGGGAGGTCGTTCGTGTTGAGTGCTCTGTCACG
CCGCTTTATGGCGGCTACGGAGTTGACAGGCCCGCGTGACGATTGTGCGG
GGTAACGTAGACAGTCTTGTATGCCAAATATGCGGTCGGTTGGGGCCCTC
GGGTCATATGAATTTGTATTCACAGCCTTTGTTGGGGTGCTGATAGCATG
GTAGCTGGCATCGTGATGCTTATAGCTTGAAGGCTGAACAGCCCCACATG
ATCAATTTCTGCTTTTTACCATGGGATTGTTGCAGTGGAGGGCAGCCGCG
GAAGCAAAGCCAAACGTCAATAATAGAGACATGAAACCGTCTCTTGAGCG
CACCTGGGAAGTTCACTGCCAAGGCGAGGAAGCCGCGTTGCTGAACGCGG
CGGCTTCGAACCGGGGTTTCCTCCGTTTGTTGGAGCTACGCAGGCGTGGA
AGCTCGTGATGAGTTAGATATCGGTCAGGCCGCGTGGCAACTGATTGCCG
TGATTTGTTGTCAGAGAGGCGAATGTCGTATCGGAGCCACGGAAATCCTT
GCCGGTACAGCGTGGACGGTCACATTTTCTGAACCCTTCTAACTTACCCC
TGTCTTTCATTTTTGTGCTATGTTGTGTAAGACCAACCCAACTGCATCTA
CATTGGCCGCCGATCCACCGACTCCAAGTGTTTGTTTGCATTGTTTTTGT
TGTTTCAGGTGAGCCCTGACGAAGCCTTTGAAGAGATCGTTGGGGTATCC
GACACCTTTATCCCAGACGCAAACATTTGGGTAGGCGAGTACCCTTATAT
TGACAAGGTGAGAAGGCGGACCTACAGGTGGCAATGTTTTGATATTTGGT
CCAGTAGTGAATTGGCGCAAATATTCGAGGAGCTCTTTCAAGTGGATATT
GATGAAGGAGGTTTCGTAGCCAGCACATGAATGGGCTCTTGTTTACTTGC
AATATTACACTATAATTTACACCGAATCACACACGGTCCGCTTGCTTACC
TCGCGGCCGTCCTCCCTCGCGATCTCCCGCCCGCGAAAAGGTTGTGATGC
TTCGCCTGCTTGCGAACCGTGATTCCAAGCGACGACAGAAAGGTGTCGAT
AGCAGCATTGGCTCGGAAACCGGGGACGAAGATGAATACTCGGAGCTAGA
CACGAGCTCCTACTACGACGCATTGCGGAGCAAGCAGGAGGAGGAAGAGA
GGAGAAAGCTGGGCTTGGGTTCCACCCGTCGTCCTGACATTGCATCTTCG
TCGCGTACGTCCTCAAGGAGCGGCAGCAACGTCTCTGACTTCTATTCCGA
TTCCGATTACGGTTTGGATAGTGAACATTATCACGGTGAGGAGGGTGCAG
ACAAGCCGCACTACAAAGGATGGGACTCCGCTGGATTCACCTCTGAAAGT
CGCGACCCCCGAAGGGGAAGATCAAGGTCCCCGACTGGCGGCGGTTGAGG
GGCGGGTAGCAGCGGCGCTGTTGGCGGTGCAGGTGACGGACCGAAGCGAA
AACAGCATTGGGAGCGGGTGTCAGCAAAGCCGAGGAGTAGGGGTGTTCCA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10062:1867..6016+

>mRNA_H-fluviatilis_contig10062.193.1 ID=mRNA_H-fluviatilis_contig10062.193.1|Name=mRNA_H-fluviatilis_contig10062.193.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=2754bp|location=Sequence derived from alignment at H-fluviatilis_contig10062:1867..6016+ (Heribaudiella fluviatilis SAG_13_90)
ATGGCGCACGGGAAATTGACGGCATTACCTTTCTCCGTTGTTCCTGTTTC
TCTGGGAGCGGCGGCGGCGGCGGGAGGAGCTTTCAGGGACGTTCCGCCTG
TGATGCCCCCCGTGGCTTTCTCTCAGTTTCCAGCTGCAACACATACAACA
CAGTTGCTGAGACACGCACGAGGGCTTGGACGCCGCACGACAACTTGTAA
AGTGCCCAGGGCGAGGGCTTTTGCCCAGTCGACGCACGGCGGCAGCGTGT
TTGGCTTGTCGCCAACGAGGAGAAGGAGATGGCGCACGGGAAATTGACGG
CATTACCTTTCTCCGTTGTTCCTGTTTCTCTGGGAGCGGCGGCGGCGGCG
GGAGGAGCTTTCAGGGACGTTCCGCCTGTGATGCCCCCCGTGGCTTTCTC
TCAGTTTCCAGCTGCAACACATACAACACAGTTGCTGAGACACGCACGAG
GGCTTGGACGCCGCACGACAACTTGTAAAGTGCCCAGGGCGAGGGCTTTT
GCCCAGTCGACGCACGGCGGCAGCGTGTTTGGCTTGTCGCCAACGAGGAG
AAGGAGGCGTCCTCGGGCATTGAACGATCTTCGTTGTGAGCTGACCCGTC
TATCAGGGGACGCTGGACACAAGGTGCTGCCTGCCCTCGCAACAAGGGAC
CAGTGGGCGCACTACTGGGGAGGGTCCGACATGCAGCGCGTGGGCAAGTT
TTTCGAGGTATCAGCCATCGCCTTCCTGGGGCTGTGGGCGTGCTACTTCA
CGAGCTTTTTCTTGGGCGTTGGCACGACGTCGATCATTGGAGCGGCGTCC
TCGGGCATTGAACGATCTTCGTTGTGAGCTGACCCGTCTATCAGGGGACG
CTGGACACAAGGTGCTGCCTGCCCTCGCAACAAGGGACCAGTGGGCGCAC
TACTGGGGAGGGTCCGACATGCAGCGCGTGGGCAAGTTTTTCGAGGTATC
AGCCATCGCCTTCCTGGGGCTGTGGGCGTGCTACTTCACGAGCTTTTTCT
TGGGCGTTGGCACGACGTCGATCATTGGAGCGGCTTTTCTGTTTTACTGG
CTACTCGCGCCAAATGTCACTGCGTTCCGCCGGAATCTGGCATTACGAGG
GAGGATTGCAGACGTTCCGGGAGGAGATGGCAACTCTGTGGCAATTTTTA
GCGCTCGAGTGGCTAGTGCAACAGAGGAGGCTTTTCTGTTTTACTGGCTA
CTCGCGCCAAATGTCACTGCGTTCCGCCGGAATCTGGCATTACGAGGGAG
GATTGCAGACGTTCCGGGAGGAGATGGCAACTCTGTGGCAATTTTTAGCG
CTCGAGTGGCTAGTGCAACAGAGGAGTACCATCCCGTGACCGGAAAACCG
GTTTTTCTGCGCATGGTGATCGCGGACGGAGAAGGCAGGGCCCTGAAGTT
TCGCACTCGTACCAGGCCTGAATACGCGCGGATTCGAGAAGGCATGGTTG
CCGAAGCCGTATTGTACCATCCCGTGACCGGAAAACCGGTTTTTCTGCGC
ATGGTGATCGCGGACGGAGAAGGCAGGGCCCTGAAGTTTCGCACTCGTAC
CAGGCCTGAATACGCGCGGATTCGAGAAGGCATGGTTGCCGAAGCCGTAT
TGGTGAGCCCTGACGAAGCCTTTGAAGAGATCGTTGGGGTATCCGACACC
TTTATCCCAGACGCAAACATTTGGGTAGGCGAGTACCCTTATATTGACAA
GGTGAGCCCTGACGAAGCCTTTGAAGAGATCGTTGGGGTATCCGACACCT
TTATCCCAGACGCAAACATTTGGGTAGGCGAGTACCCTTATATTGACAAG
GTTGTGATGCTTCGCCTGCTTGCGAACCGTGATTCCAAGCGACGACAGAA
AGGTGTCGATAGCAGCATTGGCTCGGAAACCGGGGACGAAGATGAATACT
CGGAGCTAGACACGAGCTCCTACTACGACGCATTGCGGAGCAAGCAGGAG
GAGGAAGAGAGGAGAAAGCTGGGCTTGGGTTCCACCCGTCGTCCTGACAT
TGCATCTTCGTCGCGTACGTCCTCAAGGAGCGGCAGCAACGTCTCTGACT
TCTATTCCGATTCCGATTACGGTTTGGATAGTGAACATTATCACGGTGAG
GAGGGTGCAGACAAGCCGCACTACAAAGGATGGGACTCCGCTGGATTCAC
CTCTGAAAGTCGCGACCCCCGAAGGGGAAGATCAAGGTTGTGATGCTTCG
CCTGCTTGCGAACCGTGATTCCAAGCGACGACAGAAAGGTGTCGATAGCA
GCATTGGCTCGGAAACCGGGGACGAAGATGAATACTCGGAGCTAGACACG
AGCTCCTACTACGACGCATTGCGGAGCAAGCAGGAGGAGGAAGAGAGGAG
AAAGCTGGGCTTGGGTTCCACCCGTCGTCCTGACATTGCATCTTCGTCGC
GTACGTCCTCAAGGAGCGGCAGCAACGTCTCTGACTTCTATTCCGATTCC
GATTACGGTTTGGATAGTGAACATTATCACGGTGAGGAGGGTGCAGACAA
GCCGCACTACAAAGGATGGGACTCCGCTGGATTCACCTCTGAAAGTCGCG
ACCCCCGAAGGGGAAGATCAAGCAGCGGCGCTGTTGGCGGTGCAGGTGAC
GGACCGAAGCGAAAACAGCATTGGGAGCGGGTGTCAGCAAAGCCGAGGAG
TAGGGGTGTTCCACAGCGGCGCTGTTGGCGGTGCAGGTGACGGACCGAAG
CGAAAACAGCATTGGGAGCGGGTGTCAGCAAAGCCGAGGAGTAGGGGTGT
TCCA
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