mRNA_H-fluviatilis_contig10038.136.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10038.136.1
Unique NamemRNA_H-fluviatilis_contig10038.136.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10038.136.1 vs. uniprot
Match: D8LU46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU46_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.750e-8
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 YRSGFCYAEGVLPAGTYTVIISTYNPGQVL--QVVPSVACGP 123
            YR GFCYA G+LPAGTYTVI STY PGQV   + VPSV   P
Sbjct:  373 YRMGFCYAGGILPAGTYTVIFSTYKPGQVSLHRTVPSVDTPP 414
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BLAST of mRNA_H-fluviatilis_contig10038.136.1 vs. uniprot
Match: D8LU44_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU44_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 2.420e-8
Identity = 31/59 (52.54%), Postives = 34/59 (57.63%), Query Frame = 1 
Query:    4 YRSGFCYAEGVLPAGTYTVIISTYNPGQVLQVVPSVACGPISLFFVCFPVATLTRAERE 180
            YR GFCYAE VLPAGTYTVI STY PGQV         G ++      PV   TR  +E
Sbjct:  322 YRQGFCYAENVLPAGTYTVIFSTYKPGQV--------AGFVAKLCTTSPVRPPTRIPQE 372
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BLAST of mRNA_H-fluviatilis_contig10038.136.1 vs. uniprot
Match: A0A6H5KSF9_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.860e-8
Identity = 25/29 (86.21%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    4 YRSGFCYAEGVLPAGTYTVIISTYNPGQV 90
            YR GFCYAE VLPAGTYTVI STY PGQV
Sbjct:  326 YRPGFCYAENVLPAGTYTVIFSTYRPGQV 354
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10038.136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LU46_ECTSI1.750e-869.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU44_ECTSI2.420e-852.54Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A6H5KSF9_9PHAE5.860e-886.21Calpain catalytic domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10038contigH-fluviatilis_contig10038:622..881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue3.5e-07
Seed eggNOG ortholog2880.D8LU44
KEGG koko:K08582
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size260
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.8778868-CDS-H-fluviatilis_contig10038:621..8221622929003.8778868-CDS-H-fluviatilis_contig10038:621..822Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10038 622..822 +
1691135147.9362156-CDS-H-fluviatilis_contig10038:621..8221691135147.9362156-CDS-H-fluviatilis_contig10038:621..822Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10038 622..822 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.8974147-UTR-H-fluviatilis_contig10038:822..8811622929003.8974147-UTR-H-fluviatilis_contig10038:822..881Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10038 823..881 +
1691135147.9480612-UTR-H-fluviatilis_contig10038:822..8811691135147.9480612-UTR-H-fluviatilis_contig10038:822..881Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10038 823..881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10038.136.1prot_H-fluviatilis_contig10038.136.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10038 622..822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10038.136.1

>prot_H-fluviatilis_contig10038.136.1 ID=prot_H-fluviatilis_contig10038.136.1|Name=mRNA_H-fluviatilis_contig10038.136.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=67bp
MYRSGFCYAEGVLPAGTYTVIISTYNPGQVLQVVPSVACGPISLFFVCFP
VATLTRAEREHFSRWL*
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mRNA from alignment at H-fluviatilis_contig10038:622..881+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10038.136.1 ID=mRNA_H-fluviatilis_contig10038.136.1|Name=mRNA_H-fluviatilis_contig10038.136.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=260bp|location=Sequence derived from alignment at H-fluviatilis_contig10038:622..881+ (Heribaudiella fluviatilis SAG_13_90)
ATGTACAGATCGGGTTTCTGTTATGCAGAAGGCGTTCTTCCTGCCGGAAC
TTATACGGTCATCATCAGCACCTACAACCCAGGACAGGTATTGCAAGTAG
TACCGTCCGTTGCCTGCGGACCCATTTCACTGTTTTTCGTTTGTTTTCCG
GTGGCAACTCTCACAAGAGCCGAGAGGGAGCACTTTAGCAGGTGGTTGTG
AATTAGGAGAGAGTCGCTGGTGATACCAACGTATGGTGATCGTTCGATGA
TGGATTGATG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10038:622..881+

>mRNA_H-fluviatilis_contig10038.136.1 ID=mRNA_H-fluviatilis_contig10038.136.1|Name=mRNA_H-fluviatilis_contig10038.136.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=402bp|location=Sequence derived from alignment at H-fluviatilis_contig10038:622..881+ (Heribaudiella fluviatilis SAG_13_90)
ATGTACAGATCGGGTTTCTGTTATGCAGAAGGCGTTCTTCCTGCCGGAAC
TTATACGGTCATCATCAGCACCTACAACCCAGGACAGGTATTGCAAGTAG
TACCGTCCGTTGCCTGCGGACCCATTTCACTGTTTTTCGTTTGTTTTCCG
GTGGCAACTCTCACAAGAGCCGAGAGGGAGCACTTTAGCAGGTGGTTGTG
AATGTACAGATCGGGTTTCTGTTATGCAGAAGGCGTTCTTCCTGCCGGAA
CTTATACGGTCATCATCAGCACCTACAACCCAGGACAGGTATTGCAAGTA
GTACCGTCCGTTGCCTGCGGACCCATTTCACTGTTTTTCGTTTGTTTTCC
GGTGGCAACTCTCACAAGAGCCGAGAGGGAGCACTTTAGCAGGTGGTTGT
GA
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