mRNA_H-fluviatilis_contig100210.101.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100210.101.1
Unique NamemRNA_H-fluviatilis_contig100210.101.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100210.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100210contigH-fluviatilis_contig100210:233..584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size209
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100210.101.1prot_H-fluviatilis_contig100210.101.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100210 262..581 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928999.5199811-UTR-H-fluviatilis_contig100210:232..2611622928999.5199811-UTR-H-fluviatilis_contig100210:232..261Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100210 233..261 +
1691135145.541558-UTR-H-fluviatilis_contig100210:232..2611691135145.541558-UTR-H-fluviatilis_contig100210:232..261Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100210 233..261 +
1622928999.5891325-UTR-H-fluviatilis_contig100210:581..5841622928999.5891325-UTR-H-fluviatilis_contig100210:581..584Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100210 582..584 +
1691135145.576953-UTR-H-fluviatilis_contig100210:581..5841691135145.576953-UTR-H-fluviatilis_contig100210:581..584Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100210 582..584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928999.5478814-CDS-H-fluviatilis_contig100210:261..3571622928999.5478814-CDS-H-fluviatilis_contig100210:261..357Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100210 262..357 +
1691135145.55091-CDS-H-fluviatilis_contig100210:261..3571691135145.55091-CDS-H-fluviatilis_contig100210:261..357Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100210 262..357 +
1622928999.5691583-CDS-H-fluviatilis_contig100210:500..5811622928999.5691583-CDS-H-fluviatilis_contig100210:500..581Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100210 501..581 +
1691135145.5630202-CDS-H-fluviatilis_contig100210:500..5811691135145.5630202-CDS-H-fluviatilis_contig100210:500..581Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100210 501..581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100210.101.1

>prot_H-fluviatilis_contig100210.101.1 ID=prot_H-fluviatilis_contig100210.101.1|Name=mRNA_H-fluviatilis_contig100210.101.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=59bp
MPVCFVMNRLTHVHRPRTRTVRPPLVRSYKSILWNMSTLAFIPPTSPSRC
TEIVSHVS*
back to top

mRNA from alignment at H-fluviatilis_contig100210:233..584+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100210.101.1 ID=mRNA_H-fluviatilis_contig100210.101.1|Name=mRNA_H-fluviatilis_contig100210.101.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=352bp|location=Sequence derived from alignment at H-fluviatilis_contig100210:233..584+ (Heribaudiella fluviatilis SAG_13_90)
ACGGCACAAGAACGCCCGTCTGTCAAAACATGCCTGTCTGTTTTGTCATG
AATCGTCTGACACACGTTCATCGTCCGCGAACCCGTACGGTCCGTCCCCC
GTTGGTTCGTTCGTATAAGTCAATCGTTGTGGAAATTCTAAGTTGTCCCA
CAACCGTCATAATTCATGTCTCACAGCAAACTTTTGGTGCGACCACCCTC
ATTGTCGACAATTACTGAGCCTCGACCGCCAGACCGTTGATAGTGATCGT
GGAAACATTTTTTTGTAGCTGTGGAACATGAGTACACTTGCGTTTATCCC
ACCGACTTCTCCGTCTCGGTGTACCGAAATCGTCAGCCATGTGTCTTGAG
CG
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig100210:233..584+

>mRNA_H-fluviatilis_contig100210.101.1 ID=mRNA_H-fluviatilis_contig100210.101.1|Name=mRNA_H-fluviatilis_contig100210.101.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=354bp|location=Sequence derived from alignment at H-fluviatilis_contig100210:233..584+ (Heribaudiella fluviatilis SAG_13_90)
ATGCCTGTCTGTTTTGTCATGAATCGTCTGACACACGTTCATCGTCCGCG
AACCCGTACGGTCCGTCCCCCGTTGGTTCGTTCGTATAAGTCAATCATGC
CTGTCTGTTTTGTCATGAATCGTCTGACACACGTTCATCGTCCGCGAACC
CGTACGGTCCGTCCCCCGTTGGTTCGTTCGTATAAGTCAATCCTGTGGAA
CATGAGTACACTTGCGTTTATCCCACCGACTTCTCCGTCTCGGTGTACCG
AAATCGTCAGCCATGTGTCTTGACTGTGGAACATGAGTACACTTGCGTTT
ATCCCACCGACTTCTCCGTCTCGGTGTACCGAAATCGTCAGCCATGTGTC
TTGA
back to top