mRNA_H-fluviatilis_contig10012.84.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10012.84.1
Unique NamemRNA_H-fluviatilis_contig10012.84.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.120e-12
Identity = 68/190 (35.79%), Postives = 91/190 (47.89%), Query Frame = 2 
Query:   35 QLYHDAQATIRGTF-IVLQGQAHCQGEKMCLCQIGTDGLENLFAVVRTLMPSRNVDLKDLADRFGEATTVERV-----YREHSDWKR-VSARLDGSLDYTN-TGWWDKGAVRNSDGRDVDA-KSSWESGCVDAVSI-------LQRHPSYKNITRQTFAALEREGMMMLRPKWAGQRGAWAEGRS-GGRG 553
            QL HD QATIR  F +VL+ Q  C  E++ L  IGTDGLENLFA+VRTL  + NVD K+  +RFG    VE+V      R H  ++  V+      L     T +   GA     G ++DA   + ESG  +  S        + +  +        F    R+ +  LR   AGQ G+    R  GGRG
Sbjct:   82 QLDHDLQATIRLLFYVVLEAQVRCPRERLYLWMIGTDGLENLFAIVRTLTHASNVDAKEAIERFGAVIGVEQVDAVDILRGHPSYEASVNRETISELQKVGVTTFLPFGATEGLAGGELDAFLHATESGPGEITSSCEVDGKQIHKQRALTEFMGPAFQNASRDRLKRLRGYTAGQSGSATGSRGVGGRG 271
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BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Match: A0A5C3NSN4_9APHY (Uncharacterized protein n=1 Tax=Polyporus arcularius HHB13444 TaxID=1314778 RepID=A0A5C3NSN4_9APHY)

HSP 1 Score: 58.9 bits (141), Expect = 7.350e-6
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 2 
Query:   38 LYHDAQATIRGTFIVLQGQAHCQGE-KMCLCQIGTDGLENLFAVVRTLMPS-RNVDLKDLADRFGEATTVERVYREHSDWKRVSARL 292
            LY DAQ  I+  ++        + + ++ + Q+GTDGLE +F +VRT++ S  NVD   LA+R   AT   R+  EH +W R   RL
Sbjct:  527 LYLDAQIMIKNAYMCTAKIMVVRPDGRLWIIQLGTDGLETVFGIVRTMIGSDSNVDQLQLANRVSGATQCSRILHEHPEWDRGPRRL 613
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BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 8.140e-6
Identity = 34/81 (41.98%), Postives = 44/81 (54.32%), Query Frame = 2 
Query:   47 DAQATIRGTFIVLQGQAHCQGEKMCLCQIGTDGLENLFAVVRTLMPSRNVDLKDLADRFGEATTVERV-----YREHSDWK 274
            D  A  R  +  L+ +  C  E++ L  IGTD LENLFA+V TL  + NVD K+  +RF  A  VE+V      R HS  K
Sbjct:  850 DGLAAPRVVYFQLEAKVRCPRERLYLWVIGTDELENLFAIVHTLTHASNVDAKEAIERFRAAIEVEKVDAVDILRGHSSCK 930
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BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Match: A0A409YRX2_9AGAR (Uncharacterized protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409YRX2_9AGAR)

HSP 1 Score: 57.0 bits (136), Expect = 3.330e-5
Identity = 30/88 (34.09%), Postives = 47/88 (53.41%), Query Frame = 2 
Query:   35 QLYHDAQATIRGT-FIVLQGQAHCQGEKMCLCQIGTDGLENLFAVVRTLMPS-RNVDLKDLADRFGEATTVERVYREHSDWKRVSARL 292
            QLY D    ++   F V + +A    +   +  +GTD LE LF ++RT++ S  NVD+  LA+R G  T V  ++ +H +W R    L
Sbjct:  496 QLYSDVMIMVKNIYFCVAKAKADNPTDSFWITLLGTDRLEELFGILRTMVGSDANVDVLQLAERLGGTTEVSNIFAKHPEWDRAPRPL 583
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BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Match: A0A166CTH7_9AGAM (Uncharacterized protein n=1 Tax=Sistotremastrum suecicum HHB10207 ss-3 TaxID=1314776 RepID=A0A166CTH7_9AGAM)

HSP 1 Score: 57.0 bits (136), Expect = 3.560e-5
Identity = 51/172 (29.65%), Postives = 74/172 (43.02%), Query Frame = 2 
Query:   29 SYQLYHDAQATIRGT-FIVLQGQAHCQGEKMCLCQIGTDGLENLFAVVRTLMPS-RNVDLKDLADRFGEATTVERVYREHSDWKRVSARLD----------------GSLDYTNTGWWDKGAVRNSDGRDVDAKSSWESG---CVDAVSILQRHPSYKNITRQTFAALEREG 481
            S Q Y D Q TI+   F V + +  C   K  L  +GTD LE LF + RT++ +  N DL  LA R   A    ++ +E   W   + RLD                  LD+     W KG VR +    V  ++ W SG    +D ++  +  PS      ++F  +E EG
Sbjct:  874 SSQFYFDMQQTIKNAYFCVAKTKRDCPQAKFYLILVGTDALEKLFGIYRTMIGTDTNADLYQLATRATGAVKCVKILQEEKGWDSGTRRLDIKTSILDEAPEDKKTAQKLDHLKPESW-KGDVRVAG---VGLQTCWNSGRSMAIDDMTDCEMTPS------KSFDEMESEG 1035
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BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Match: A0A166H4Q4_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Sistotremastrum suecicum HHB10207 ss-3 TaxID=1314776 RepID=A0A166H4Q4_9AGAM)

HSP 1 Score: 56.6 bits (135), Expect = 3.740e-5
Identity = 37/105 (35.24%), Postives = 50/105 (47.62%), Query Frame = 2 
Query:   29 SYQLYHDAQATIRGT-FIVLQGQAHCQGEKMCLCQIGTDGLENLFAVVRTLMPS-RNVDLKDLADRFGEATTVERVYREHSDWKRVSARLDGSLDYTNTGWWDKG 337
            S Q Y D Q TI+   F V + +  C   K  L  +GTD LE LF + RT++ +  N DL  LA R   A    ++ +E   W   + RLD       T  WD+G
Sbjct:  460 SSQFYFDMQQTIKNAYFCVAKTKRDCPKAKFYLILVGTDALEKLFGIYRTMIGTDTNADLYQLATRATGAVKCVKILQEEKGWDSGTRRLD-----IKTTVWDEG 559
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BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Match: A0A371DN83_9APHY (PHD domain-containing protein n=1 Tax=Polyporus brumalis TaxID=139420 RepID=A0A371DN83_9APHY)

HSP 1 Score: 56.2 bits (134), Expect = 6.210e-5
Identity = 32/87 (36.78%), Postives = 48/87 (55.17%), Query Frame = 2 
Query:   38 LYHDAQATIRGTFIVLQGQAHCQGE-KMCLCQIGTDGLENLFAVVRTLMPS-RNVDLKDLADRFGEATTVERVYREHSDWKRVSARL 292
            LY DAQ  I+  ++        +   ++ +  +GTDGLE +F +VRT++ S  NVD   LA+R   AT   R+ +EH +W R   RL
Sbjct:  923 LYLDAQIMIKNAYVCTAKMIVDRPTGRIWIIMLGTDGLEKVFGIVRTMIGSDSNVDQLQLANRVTGATQCSRILQEHPEWDRGPRRL 1009
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L2E6_9PHAE3.120e-1235.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5C3NSN4_9APHY7.350e-637.93Uncharacterized protein n=1 Tax=Polyporus arculari... [more]
A0A6H5K6M3_9PHAE8.140e-641.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A409YRX2_9AGAR3.330e-534.09Uncharacterized protein n=1 Tax=Gymnopilus dilepis... [more]
A0A166CTH7_9AGAM3.560e-529.65Uncharacterized protein n=1 Tax=Sistotremastrum su... [more]
A0A166H4Q4_9AGAM3.740e-535.24Uncharacterized protein (Fragment) n=1 Tax=Sistotr... [more]
A0A371DN83_9APHY6.210e-536.78PHD domain-containing protein n=1 Tax=Polyporus br... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10012contigH-fluviatilis_contig10012:5572..7191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue8.6e-17
Seed eggNOG ortholog2880.D7G3X4
EggNOG OGs2DMFT@1,2S64X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1021
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10012.84.1prot_H-fluviatilis_contig10012.84.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10012 5687..6341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.5396144-UTR-H-fluviatilis_contig10012:5571..56861622928997.5396144-UTR-H-fluviatilis_contig10012:5571..5686Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10012 5572..5686 +
1691135144.4592326-UTR-H-fluviatilis_contig10012:5571..56861691135144.4592326-UTR-H-fluviatilis_contig10012:5571..5686Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10012 5572..5686 +
1622928997.587244-UTR-H-fluviatilis_contig10012:6341..64691622928997.587244-UTR-H-fluviatilis_contig10012:6341..6469Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10012 6342..6469 +
1691135144.4964-UTR-H-fluviatilis_contig10012:6341..64691691135144.4964-UTR-H-fluviatilis_contig10012:6341..6469Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10012 6342..6469 +
1622928997.600553-UTR-H-fluviatilis_contig10012:6869..71911622928997.600553-UTR-H-fluviatilis_contig10012:6869..7191Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10012 6870..7191 +
1691135144.5159955-UTR-H-fluviatilis_contig10012:6869..71911691135144.5159955-UTR-H-fluviatilis_contig10012:6869..7191Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10012 6870..7191 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.5576608-CDS-H-fluviatilis_contig10012:5686..60761622928997.5576608-CDS-H-fluviatilis_contig10012:5686..6076Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10012 5687..6076 +
1691135144.4754317-CDS-H-fluviatilis_contig10012:5686..60761691135144.4754317-CDS-H-fluviatilis_contig10012:5686..6076Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10012 5687..6076 +
1622928997.5732448-CDS-H-fluviatilis_contig10012:6275..63411622928997.5732448-CDS-H-fluviatilis_contig10012:6275..6341Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10012 6276..6341 +
1691135144.4889765-CDS-H-fluviatilis_contig10012:6275..63411691135144.4889765-CDS-H-fluviatilis_contig10012:6275..6341Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10012 6276..6341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10012.84.1

>prot_H-fluviatilis_contig10012.84.1 ID=prot_H-fluviatilis_contig10012.84.1|Name=mRNA_H-fluviatilis_contig10012.84.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=152bp
MCLCQIGTDGLENLFAVVRTLMPSRNVDLKDLADRFGEATTVERVYREHS
DWKRVSARLDGSLDYTNTGWWDKGAVRNSDGRDVDAKSSWESGCVDAVSI
LQRHPSYKNITRQTFAALEREGMMMLRPKWAGQRGAWAEGRSGGRGGGKS
V*
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mRNA from alignment at H-fluviatilis_contig10012:5572..7191+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10012.84.1 ID=mRNA_H-fluviatilis_contig10012.84.1|Name=mRNA_H-fluviatilis_contig10012.84.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=1620bp|location=Sequence derived from alignment at H-fluviatilis_contig10012:5572..7191+ (Heribaudiella fluviatilis SAG_13_90)
GCTCACGGGACAGCCTTCGCGACAGCCCAGCTATCAGCTTTACCACGATG
CGCAAGCTACCATTCGAGGGACCTTCATCGTGCTCCAAGGGCAAGCCCAT
TGCCAAGGAGAGAAGATGTGTTTGTGCCAAATTGGCACAGATGGGCTCGA
GAACCTATTCGCAGTTGTGCGAACCCTGATGCCTTCCCGCAACGTCGACC
TGAAGGACTTAGCAGACCGCTTTGGAGAGGCAACGACGGTAGAGCGGGTC
TACAGAGAGCACAGTGATTGGAAACGAGTGTCAGCACGCCTGGACGGATC
GTTAGATTACACGAACACCGGCTGGTGGGACAAGGGGGCCGTTCGCAACA
GCGACGGGCGGGACGTTGATGCTAAGTCGAGTTGGGAAAGCGGGTGCGTT
GACGCCGTTTCTATCCTTCAACGTCACCCCAGCTACAAGAACATCACGCG
GCAGACATTCGCCGCCTTGGAGCGTGAGGGCATGATGATGCTGCGGCCGA
AATGGGTGAGTCGTTTTGTCGCTCGAAAGTGGCATTTTCGAACACGGTAC
GTTGAGGCAATATTATTCCAGCCACATTTTGGCTGGCTTCACCAATCCAA
CAAGGTGATGCCCCACAAATATAGCAAAGACATCATTACTTGCTTTCTGA
TTGCCCTTTCTGATTTGTGCTGGCCTCCGTCCTTGGTATGATTCTTATGC
GCAGGCGGGACAAAGGGGTGCCTGGGCTGAAGGTCGGTCAGGAGGAAGAG
GAGGAGGAAAGTCCGTGTGAGGATCCGCCCGTCCCATCTGTGCGTGAAGA
AAACGACGACGCTGCACTCGAGCTCGACACGCTGCTGAGTGCGCAGCAGG
CTGGGGACAGCGACCCTTCCCCCTTCGTTGAGGTCGAACAATACGCAGGT
GATTAGCTTGAGGCGAGCTGGGCGGTATTTGTCCTAGCGCAGCACAGGGC
GGCCCGAGCAGGGGGGATTCGCTATGCTGGATTTAGACGTGGTCCCGGAC
AAATATTGACATGTTCGTTCTTCGTGAAACCGCTGGGTGTGAATTGTATC
TTCAGAAAACTTCCACCGTCCAATTGACGACTGAAAATTCAGAACTTATC
TGAGGGTCAGGATTGCAGGTAAACCTGGCAGTGTCGTCGACTCGCCCCTA
CGAAACAAATGAGATTTGTATTTTGTTGTCGTGTTGTCAATTTTGTGCTG
TTGTAAAGTAAGACTCAAGAATCTGGGAGCATTGTCTGCCGGACCTCGCA
CGCGGCCACTCATCAGTACTCGAATCCTCGCTGTTATTTGCACCTCAGGT
GTATAAGCAATCTGCTATATCCCTCTTCCTTAGCGCGGAGTCGAAGACAC
CGTCGAGGTCGCGGCTTGCGCGAGTGAGAGGATTCGCGCCAGTCCCGCCG
ACCGCCAGCGTCCCAGTTGACGAGCAAACTCTTTAATGGGCAACCCTTTC
GCTGCCTTTGTGCGAATGCGCAGCAGCGGGGAATCATACTCGGTAGGCAT
CTTCGAGGCAACGTCGTTCCGGACGCGAGCGGGTGCGGCGACTCCGACTT
TCGGAGCAAAGGTCGTCGCCACCTTGATGCGGGTCGTTCGGGTGGTTGCA
CCGCAGCCCCCGCAAAGATT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10012:5572..7191+

>mRNA_H-fluviatilis_contig10012.84.1 ID=mRNA_H-fluviatilis_contig10012.84.1|Name=mRNA_H-fluviatilis_contig10012.84.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=912bp|location=Sequence derived from alignment at H-fluviatilis_contig10012:5572..7191+ (Heribaudiella fluviatilis SAG_13_90)
ATGTGTTTGTGCCAAATTGGCACAGATGGGCTCGAGAACCTATTCGCAGT
TGTGCGAACCCTGATGCCTTCCCGCAACGTCGACCTGAAGGACTTAGCAG
ACCGCTTTGGAGAGGCAACGACGGTAGAGCGGGTCTACAGAGAGCACAGT
GATTGGAAACGAGTGTCAGCACGCCTGGACGGATCGTTAGATTACACGAA
CACCGGCTGGTGGGACAAGGGGGCCGTTCGCAACAGCGACGGGCGGGACG
TTGATGCTAAGTCGAGTTGGGAAAGCGGGTGCGTTGACGCCGTTTCTATC
CTTCAACGTCACCCCAGCTACAAGAACATCACGCGGCAGACATTCGCCGC
CTTGGAGCGTGAGGGCATGATGATGCTGCGGCCGAAATGGATGTGTTTGT
GCCAAATTGGCACAGATGGGCTCGAGAACCTATTCGCAGTTGTGCGAACC
CTGATGCCTTCCCGCAACGTCGACCTGAAGGACTTAGCAGACCGCTTTGG
AGAGGCAACGACGGTAGAGCGGGTCTACAGAGAGCACAGTGATTGGAAAC
GAGTGTCAGCACGCCTGGACGGATCGTTAGATTACACGAACACCGGCTGG
TGGGACAAGGGGGCCGTTCGCAACAGCGACGGGCGGGACGTTGATGCTAA
GTCGAGTTGGGAAAGCGGGTGCGTTGACGCCGTTTCTATCCTTCAACGTC
ACCCCAGCTACAAGAACATCACGCGGCAGACATTCGCCGCCTTGGAGCGT
GAGGGCATGATGATGCTGCGGCCGAAATGGGCGGGACAAAGGGGTGCCTG
GGCTGAAGGTCGGTCAGGAGGAAGAGGAGGAGGAAAGTCCGTGTGAGCGG
GACAAAGGGGTGCCTGGGCTGAAGGTCGGTCAGGAGGAAGAGGAGGAGGA
AAGTCCGTGTGA
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