mRNA_H-fluviatilis_contig100062.74.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100062.74.1
Unique NamemRNA_H-fluviatilis_contig100062.74.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100062.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100062contigH-fluviatilis_contig100062:145..582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.7180376-CDS-H-fluviatilis_contig100062:144..2551622928996.7180376-CDS-H-fluviatilis_contig100062:144..255Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100062 145..255 -
1691135143.9775712-CDS-H-fluviatilis_contig100062:144..2551691135143.9775712-CDS-H-fluviatilis_contig100062:144..255Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100062 145..255 -
1622928996.732079-CDS-H-fluviatilis_contig100062:468..5821622928996.732079-CDS-H-fluviatilis_contig100062:468..582Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100062 469..582 -
1691135143.9948313-CDS-H-fluviatilis_contig100062:468..5821691135143.9948313-CDS-H-fluviatilis_contig100062:468..582Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100062 469..582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100062.74.1prot_H-fluviatilis_contig100062.74.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100062 145..582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100062.74.1

>prot_H-fluviatilis_contig100062.74.1 ID=prot_H-fluviatilis_contig100062.74.1|Name=mRNA_H-fluviatilis_contig100062.74.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=75bp
NVATDCNPIADCVTGLTCGSASDSQCTVCAEGKFLSDGTIVNCNSSSLTC
SSAVSSQCSSCVNGYWVNHQVIDTC
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mRNA from alignment at H-fluviatilis_contig100062:145..582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100062.74.1 ID=mRNA_H-fluviatilis_contig100062.74.1|Name=mRNA_H-fluviatilis_contig100062.74.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=438bp|location=Sequence derived from alignment at H-fluviatilis_contig100062:145..582- (Heribaudiella fluviatilis SAG_13_90)
AACGTTGCGACAGACTGCAACCCAATCGCTGATTGTGTCACGGGCCTGAC
CTGTGGGAGCGCTTCTGATTCGCAGTGCACCGTGTGCGCAGAGGGCAAGT
TTCTCAGCGACGGTGTACCTGTCGACTCGTGCCAAGGTATCCGTTGGCCG
GTCTTACTCGATTTGTTAGCATGCTCACCGGTTGCGAGCTGCAATAGCAC
ATTGAAATGCACGAACGCCACTATGTCTCGCTGCGAAGCCTGTCAGTCGG
GGTTTTGGCTTGTCGAACCGGCTCGGGATAGATGCCAAGGTATCAAATGG
GTTGAATGACAAGTCGCAGCGTGCGAGACCATTGTCAATTGCAACAGCAG
CTCGCTTACGTGCAGTAGTGCGGTGTCCTCGCAGTGCTCGTCGTGCGTCA
ATGGGTATTGGGTGAACCACCAAGTCATTGACACATGC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100062:145..582-

>mRNA_H-fluviatilis_contig100062.74.1 ID=mRNA_H-fluviatilis_contig100062.74.1|Name=mRNA_H-fluviatilis_contig100062.74.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=450bp|location=Sequence derived from alignment at H-fluviatilis_contig100062:145..582- (Heribaudiella fluviatilis SAG_13_90)
AACGTTGCGACAGACTGCAACCCAATCGCTGATTGTGTCACGGGCCTGAC
CTGTGGGAGCGCTTCTGATTCGCAGTGCACCGTGTGCGCAGAGGGCAAGT
TTCTCAGCGACGGTAACGTTGCGACAGACTGCAACCCAATCGCTGATTGT
GTCACGGGCCTGACCTGTGGGAGCGCTTCTGATTCGCAGTGCACCGTGTG
CGCAGAGGGCAAGTTTCTCAGCGACGGTACCATTGTCAATTGCAACAGCA
GCTCGCTTACGTGCAGTAGTGCGGTGTCCTCGCAGTGCTCGTCGTGCGTC
AATGGGTATTGGGTGAACCACCAAGTCATTGACACATGCACCATTGTCAA
TTGCAACAGCAGCTCGCTTACGTGCAGTAGTGCGGTGTCCTCGCAGTGCT
CGTCGTGCGTCAATGGGTATTGGGTGAACCACCAAGTCATTGACACATGC
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