mRNA_H-fluviatilis_contig99816.41266.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig99816.41266.1
Unique NamemRNA_H-fluviatilis_contig99816.41266.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig99816.41266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig99816contigH-fluviatilis_contig99816:2..441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size385
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig99816.41266.1prot_H-fluviatilis_contig99816.41266.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig99816 53..386 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935324.4742715-UTR-H-fluviatilis_contig99816:1..521622935324.4742715-UTR-H-fluviatilis_contig99816:1..52Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig99816 2..52 +
1691137891.2144012-UTR-H-fluviatilis_contig99816:1..521691137891.2144012-UTR-H-fluviatilis_contig99816:1..52Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig99816 2..52 +
1622935324.591203-UTR-H-fluviatilis_contig99816:386..4411622935324.591203-UTR-H-fluviatilis_contig99816:386..441Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig99816 387..441 +
1691137891.273816-UTR-H-fluviatilis_contig99816:386..4411691137891.273816-UTR-H-fluviatilis_contig99816:386..441Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig99816 387..441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935324.4925616-CDS-H-fluviatilis_contig99816:52..691622935324.4925616-CDS-H-fluviatilis_contig99816:52..69Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig99816 53..69 +
1691137891.227193-CDS-H-fluviatilis_contig99816:52..691691137891.227193-CDS-H-fluviatilis_contig99816:52..69Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig99816 53..69 +
1622935324.539776-CDS-H-fluviatilis_contig99816:97..1961622935324.539776-CDS-H-fluviatilis_contig99816:97..196Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig99816 98..196 +
1691137891.2398129-CDS-H-fluviatilis_contig99816:97..1961691137891.2398129-CDS-H-fluviatilis_contig99816:97..196Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig99816 98..196 +
1622935324.5733385-CDS-H-fluviatilis_contig99816:223..3861622935324.5733385-CDS-H-fluviatilis_contig99816:223..386Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig99816 224..386 +
1691137891.2566679-CDS-H-fluviatilis_contig99816:223..3861691137891.2566679-CDS-H-fluviatilis_contig99816:223..386Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig99816 224..386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig99816.41266.1

>prot_H-fluviatilis_contig99816.41266.1 ID=prot_H-fluviatilis_contig99816.41266.1|Name=mRNA_H-fluviatilis_contig99816.41266.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=93bp
MHGPLRVSTMSLTTTTTTTPTVLTTTMVINPCDLSTLTQCVAVSFCNSRS
TPLDRGVGWVVSSFRLYGHRLSPLTVTPVLTSPVHHAPCRVL*
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mRNA from alignment at H-fluviatilis_contig99816:2..441+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig99816.41266.1 ID=mRNA_H-fluviatilis_contig99816.41266.1|Name=mRNA_H-fluviatilis_contig99816.41266.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=440bp|location=Sequence derived from alignment at H-fluviatilis_contig99816:2..441+ (Heribaudiella fluviatilis SAG_13_90)
TGAGCGGAGGGATGAGCGGTGGTGGAATGAGTGGTGGAATGTCTGGTGGA
AATGCATGGGCCCCTCAGGTGAGGGCAAGCGTCTTCATGGATGCAGGGTC
AGCACCATGTCCCTCACCACCACCACAACAACAACACCTACGGTTCTTAC
AACAACAATGGTTATCAACCCATGCGACCTGTCTACACTGACTCAGTACG
CGCGTTGCTTCAGATGACTTAGGTGTGTTGCTGTATCATTCTGTAATTCG
CGATCCACGCCCCTTGACCGCGGTGTCGGCTGGGTGGTGTCTTCATTCCG
TTTGTATGGACACCGACTCTCTCCTCTGACCGTCACTCCAGTACTCACTT
CGCCTGTACACCACGCACCATGCCGTGTACTCTGACTGCGCTCACAACAA
ATGCCTCGATTGTTTTCATTCATTCCAGAATTTCTGTCAC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig99816:2..441+

>mRNA_H-fluviatilis_contig99816.41266.1 ID=mRNA_H-fluviatilis_contig99816.41266.1|Name=mRNA_H-fluviatilis_contig99816.41266.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=558bp|location=Sequence derived from alignment at H-fluviatilis_contig99816:2..441+ (Heribaudiella fluviatilis SAG_13_90)
ATGCATGGGCCCCTCAGATGCATGGGCCCCTCAGGGTCAGCACCATGTCC
CTCACCACCACCACAACAACAACACCTACGGTTCTTACAACAACAATGGT
TATCAACCCATGCGACCTGTCTACACTGACTCAGGTCAGCACCATGTCCC
TCACCACCACCACAACAACAACACCTACGGTTCTTACAACAACAATGGTT
ATCAACCCATGCGACCTGTCTACACTGACTCAGTGTGTTGCTGTATCATT
CTGTAATTCGCGATCCACGCCCCTTGACCGCGGTGTCGGCTGGGTGGTGT
CTTCATTCCGTTTGTATGGACACCGACTCTCTCCTCTGACCGTCACTCCA
GTACTCACTTCGCCTGTACACCACGCACCATGCCGTGTACTCTGAGTGTG
TTGCTGTATCATTCTGTAATTCGCGATCCACGCCCCTTGACCGCGGTGTC
GGCTGGGTGGTGTCTTCATTCCGTTTGTATGGACACCGACTCTCTCCTCT
GACCGTCACTCCAGTACTCACTTCGCCTGTACACCACGCACCATGCCGTG
TACTCTGA
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