mRNA_H-fluviatilis_contig104008.834.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig104008.834.1
Unique NamemRNA_H-fluviatilis_contig104008.834.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig104008.834.1 vs. uniprot
Match: A0A8I6SN40_CIMLE (AA_TRNA_LIGASE_II_ALA domain-containing protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6SN40_CIMLE)

HSP 1 Score: 77.0 bits (188), Expect = 5.130e-14
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   61 CQTDSYLQSFTAKVVSCAPTAKDESKKRDKPKKGEKPAEEKTYDVQLSDTVLFPEGGGQPSDVGTIDGVPVKFVYRQHTDKAH 309
            CQ DS+ + +T+ VVSC P    E KK    KK     + K Y+V L DT+LFPEGGGQP D GTIDG+PV  V R+  D  H
Sbjct:    5 CQRDSFQKEYTSSVVSCTPA---EFKKLSNGKK----EKIKCYEVVLKDTILFPEGGGQPCDYGTIDGIPVVHVLRRGQDAVH 80          
BLAST of mRNA_H-fluviatilis_contig104008.834.1 vs. uniprot
Match: A0A5E8B0P1_9ASCO (tRNA_SAD domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8B0P1_9ASCO)

HSP 1 Score: 75.5 bits (184), Expect = 2.060e-13
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   52 LAVCQTDSYLQSFTAKVVSCAPTAKDESKKRDKPKKGEKPAEEKTYDVQLSDTVLFPEGGGQPSDVGTI 258
            L  CQ DSYL++ T KV+SC    KD +KK  K KK   P     Y+++L+DT LFPEGGGQPSD G I
Sbjct:   30 LLACQIDSYLKTLTTKVISCTEIPKDTTKKASKGKKETIPENPAKYEIELADTTLFPEGGGQPSDTGVI 98          
BLAST of mRNA_H-fluviatilis_contig104008.834.1 vs. uniprot
Match: A0A7R8YZ92_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8YZ92_HERIL)

HSP 1 Score: 75.1 bits (183), Expect = 2.510e-13
Identity = 40/83 (48.19%), Postives = 46/83 (55.42%), Query Frame = 1
Query:   61 CQTDSYLQSFTAKVVSCAPTAKDESKKRDKPKKGEKPAEEKTYDVQLSDTVLFPEGGGQPSDVGTIDGVPVKFVYRQHTDKAH 309
            CQ DS+L+ F  KVVSC P    E  K            E  Y V L DT+LFPEGGGQP D GT+DG PVK V R  ++  H
Sbjct:    5 CQEDSFLKEFVGKVVSCEPVKTAEDSK------------ETEYKVILDDTILFPEGGGQPFDYGTLDGKPVKSVIRVGSEAVH 75          
BLAST of mRNA_H-fluviatilis_contig104008.834.1 vs. uniprot
Match: A0A5A9Q153_9TELE (Alanyl-tRNA editing protein n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9Q153_9TELE)

HSP 1 Score: 73.9 bits (180), Expect = 6.530e-13
Identity = 41/84 (48.81%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   61 CQTDSYLQSFTAKVVSCAPT-AKDESKKRDKPKKGEKPAEEKTYDVQLSDTVLFPEGGGQPSDVGTIDGVPVKFVYRQHTDKAH 309
            CQ DSY+Q F   VVSC P   K E+  + +  KG        ++V+L DT+LFPEGGGQP D+GTI GVPV  V RQ  +  H
Sbjct:    5 CQRDSYMQEFDTSVVSCEPVDLKLENNGKKEKVKG--------FNVKLKDTILFPEGGGQPDDLGTIAGVPVLRVMRQGPEAVH 80          
BLAST of mRNA_H-fluviatilis_contig104008.834.1 vs. uniprot
Match: T1PEG1_MUSDO (Threonyl and Alanyl tRNA synthetase n=1 Tax=Musca domestica TaxID=7370 RepID=T1PEG1_MUSDO)

HSP 1 Score: 73.9 bits (180), Expect = 6.800e-13
Identity = 41/84 (48.81%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   61 CQTDSYLQSFTAKVVSCAPTAKDESKKRDKPKKGE-KPAEEKTYDVQLSDTVLFPEGGGQPSDVGTIDGVPVKFVYRQHTDKAH 309
            CQ DS+L+ F   VVSC      E  K   P  G+ +P E + Y+V   DT+LFPEGGGQP D GTI+G+PV+ V RQ  D  H
Sbjct:    5 CQEDSFLKQFLTTVVSC------EEAKLKVPSNGDSEPIELEGYNVICEDTILFPEGGGQPCDYGTINGLPVRSVIRQGKDAVH 82          
BLAST of mRNA_H-fluviatilis_contig104008.834.1 vs. uniprot
Match: A0A1E3QWF0_9ASCO (AA_TRNA_LIGASE_II_ALA domain-containing protein n=1 Tax=Babjeviella inositovora NRRL Y-12698 TaxID=984486 RepID=A0A1E3QWF0_9ASCO)

HSP 1 Score: 73.2 bits (178), Expect = 1.240e-12
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   61 CQTDSYLQSFTAKVVSCAPTAKDESKKRDKPKKGEKPAEEKTYDVQLSDTVLFPEGGGQPSDVGTIDG-VPVKFVYR 288
            CQ DSYL++ T KVV C     ++     K KK  +P   K+Y+V+L DTVLFPEGGGQPSD G+I+G +PV +V R
Sbjct:   15 CQRDSYLRTLTTKVVGCQELLPEK-----KSKKASEPVT-KSYEVELEDTVLFPEGGGQPSDTGSINGSIPVTYVKR 85          
BLAST of mRNA_H-fluviatilis_contig104008.834.1 vs. uniprot
Match: A0A512ULY9_9ASCO (AA_TRNA_LIGASE_II_ALA domain-containing protein n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512ULY9_9ASCO)

HSP 1 Score: 72.4 bits (176), Expect = 2.420e-12
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   61 CQTDSYLQSFTAKVVSCAP-----TAKDESKKRDKPKKGEKPAEEKTYDVQLSDTVLFPEGGGQPSDVGTI----DGVPVKFVYRQHTDKAH 309
            CQ +S+L++   KVV C       T+KD+   + KP+K +K ++E  Y V+L DT+LFPEGGGQP D G++    D +PV+ V+RQ     H
Sbjct:   16 CQKNSFLKTLQTKVVGCKEYEPIRTSKDKQNSKKKPEKDQK-SQEPLYAVELQDTILFPEGGGQPFDTGSLTTGSDKIPVQMVFRQELTAVH 106          
BLAST of mRNA_H-fluviatilis_contig104008.834.1 vs. uniprot
Match: A0A6J2VGZ2_CHACN (alanyl-tRNA editing protein Aarsd1 n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2VGZ2_CHACN)

HSP 1 Score: 72.0 bits (175), Expect = 3.140e-12
Identity = 43/85 (50.59%), Postives = 50/85 (58.82%), Query Frame = 1
Query:   61 CQTDSYLQSFTAKVVSCAPTAKDESKKRDKPKKGEKPAEEKT--YDVQLSDTVLFPEGGGQPSDVGTIDGVPVKFVYRQHTDKAH 309
            CQ DSY+Q F   VVSC+P    E K  +  KK      EK   + V+L DT+LFPEGGGQP D GTI GVPV  V RQ  +  H
Sbjct:    5 CQRDSYMQEFVTSVVSCSPA---ELKLENNGKK------EKVNGFSVKLKDTILFPEGGGQPDDRGTIGGVPVLRVTRQGPEAIH 80          
BLAST of mRNA_H-fluviatilis_contig104008.834.1 vs. uniprot
Match: A0A1Y2GK35_9FUNG (tRNA_SAD domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GK35_9FUNG)

HSP 1 Score: 72.0 bits (175), Expect = 3.360e-12
Identity = 42/94 (44.68%), Postives = 52/94 (55.32%), Query Frame = 1
Query:   31 IPGGKMPLAVCQTDSYLQSFTAKVVSCAPTAKDESKKRDKPKKGEKPAEEKTYDVQLSDTVLFPEGGGQPSDVGTI-DGVPVKFVYRQHTDKAH 309
            +P G   L  CQ   YL+SFT  V+SC+                EKP ++K Y+VQL DT+LFPEGGGQP D GTI + + VK V R  T   H
Sbjct:   16 VPVG---LLTCQHTPYLRSFTTSVLSCS----------------EKPNKQKLYEVQLQDTILFPEGGGQPCDYGTINEDIEVKSVQRVGTSHVH 90          
BLAST of mRNA_H-fluviatilis_contig104008.834.1 vs. uniprot
Match: UPI001C098E89 (alanyl-tRNA editing protein Aarsd1 n=2 Tax=Alosa TaxID=34772 RepID=UPI001C098E89)

HSP 1 Score: 71.6 bits (174), Expect = 4.300e-12
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   61 CQTDSYLQSFTAKVVSCAPTAKDESKKRDKPKKGEKPAEEKTYDVQLSDTVLFPEGGGQPSDVGTIDGVPVKFVYRQHTDKAH 309
            CQ D Y+Q +T  VVSCA  A+ + +   K +K       K Y+V+L DT+LFPEGGGQP D GTI GVPV  + RQ  +  H
Sbjct:    5 CQRDCYMQEYTTSVVSCA-EAELQLENNGKKEKV------KGYNVKLKDTILFPEGGGQPDDRGTIGGVPVLRILRQGPEAVH 80          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig104008.834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8I6SN40_CIMLE5.130e-1450.60AA_TRNA_LIGASE_II_ALA domain-containing protein n=... [more]
A0A5E8B0P1_9ASCO2.060e-1353.62tRNA_SAD domain-containing protein n=1 Tax=Saproch... [more]
A0A7R8YZ92_HERIL2.510e-1348.19Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
A0A5A9Q153_9TELE6.530e-1348.81Alanyl-tRNA editing protein n=1 Tax=Triplophysa ti... [more]
T1PEG1_MUSDO6.800e-1348.81Threonyl and Alanyl tRNA synthetase n=1 Tax=Musca ... [more]
A0A1E3QWF0_9ASCO1.240e-1251.95AA_TRNA_LIGASE_II_ALA domain-containing protein n=... [more]
A0A512ULY9_9ASCO2.420e-1242.39AA_TRNA_LIGASE_II_ALA domain-containing protein n=... [more]
A0A6J2VGZ2_CHACN3.140e-1250.59alanyl-tRNA editing protein Aarsd1 n=1 Tax=Chanos ... [more]
A0A1Y2GK35_9FUNG3.360e-1244.68tRNA_SAD domain-containing protein n=1 Tax=Lobospo... [more]
UPI001C098E894.300e-1248.19alanyl-tRNA editing protein Aarsd1 n=2 Tax=Alosa T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig104008contigH-fluviatilis_contig104008:130..692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score73.6
Seed ortholog evalue6.7e-11
Seed eggNOG ortholog7370.XP_005186270.1
KEGG koko:K07050
EggNOG free text desc.alanine-tRNA ligase activity. It is involved in the biological process described with alanyl-tRNA aminoacylation
EggNOG OGs38FJV@33154,3BHA2@33208,3CVJM@33213,3SJZJ@50557,41Y66@6656,451MJ@7147,COG2872@1,KOG2105@2759
COG Functional cat.J
Best tax levelDiptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons5
Model size380
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig104008.834.1prot_H-fluviatilis_contig104008.834.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig104008 175..692 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929104.9891-UTR-H-fluviatilis_contig104008:129..1741622929104.9891-UTR-H-fluviatilis_contig104008:129..174Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig104008 130..174 +
1691135183.7997086-UTR-H-fluviatilis_contig104008:129..1741691135183.7997086-UTR-H-fluviatilis_contig104008:129..174Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig104008 130..174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.000129-CDS-H-fluviatilis_contig104008:174..2881622929105.000129-CDS-H-fluviatilis_contig104008:174..288Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig104008 175..288 +
1691135183.8100579-CDS-H-fluviatilis_contig104008:174..2881691135183.8100579-CDS-H-fluviatilis_contig104008:174..288Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig104008 175..288 +
1622929105.0107975-CDS-H-fluviatilis_contig104008:319..3721622929105.0107975-CDS-H-fluviatilis_contig104008:319..372Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig104008 320..372 +
1691135183.8177037-CDS-H-fluviatilis_contig104008:319..3721691135183.8177037-CDS-H-fluviatilis_contig104008:319..372Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig104008 320..372 +
1622929105.0262048-CDS-H-fluviatilis_contig104008:403..4201622929105.0262048-CDS-H-fluviatilis_contig104008:403..420Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig104008 404..420 +
1691135183.8260076-CDS-H-fluviatilis_contig104008:403..4201691135183.8260076-CDS-H-fluviatilis_contig104008:403..420Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig104008 404..420 +
1622929105.0498478-CDS-H-fluviatilis_contig104008:448..5151622929105.0498478-CDS-H-fluviatilis_contig104008:448..515Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig104008 449..515 +
1691135183.8358712-CDS-H-fluviatilis_contig104008:448..5151691135183.8358712-CDS-H-fluviatilis_contig104008:448..515Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig104008 449..515 +
1622929105.0711179-CDS-H-fluviatilis_contig104008:610..6921622929105.0711179-CDS-H-fluviatilis_contig104008:610..692Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig104008 611..692 +
1691135183.843533-CDS-H-fluviatilis_contig104008:610..6921691135183.843533-CDS-H-fluviatilis_contig104008:610..692Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig104008 611..692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig104008.834.1

>prot_H-fluviatilis_contig104008.834.1 ID=prot_H-fluviatilis_contig104008.834.1|Name=mRNA_H-fluviatilis_contig104008.834.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=111bp
MPLAVCQTDSYLQSFTAKVVSCAPTAKDESKKRDKPKKGEKPAEEKTYDV
QLSDTVLFPEGGGQPSDVGTIDGVPVKFVYRQHTDKAHGESDDGSACDHG
GMHMSSDMEET
back to top

mRNA from alignment at H-fluviatilis_contig104008:130..692+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig104008.834.1 ID=mRNA_H-fluviatilis_contig104008.834.1|Name=mRNA_H-fluviatilis_contig104008.834.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=563bp|location=Sequence derived from alignment at H-fluviatilis_contig104008:130..692+ (Heribaudiella fluviatilis SAG_13_90)
ATTTGCTTGCGATTACCAGCGTGGTTGTGAATTCCTGGTGGAAAGATGCC TTTAGCAGTGTGCCAAACCGATTCCTATCTGCAAAGCTTCACTGCCAAGG TTGTGTCATGTGCCCCCACCGCCAAGGACGAGTCCAAGAAACGCGACAAA CCCAAGAAGGTCGCCTCAACTGGACTGAACTCGGCGTTAGGGGGAGAAGC CGGCAGAAGAGAAAACGTACGACGTCCAATTGTCGGATACAGTGTGAGGC TATTTTGTTTTTTATGCATATTAGGCTGTTCCCTGAAGGAGGTTTGGGTT CGTCTGTGACCGTACGCAGGTGGTCAGCCCTCCGATGTGGGGACGATCGA CGGAGTGCCCGTCAAATTCGTGTATCGCCAACACACGTAATGCACCCCAT TTTGTGTTTCTTGTGCTCTCTGTCGTTTGTTGGCCAACCATGCCCTCCCA GCATGGACTGGACAATCACTTTTGGACATAGGGACAAGGCGCACGGGGAG AGTGACGATGGCTCCGCCTGCGACCACGGCGGCATGCATATGAGCAGCGA CATGGAGGAGACG
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig104008:130..692+

>mRNA_H-fluviatilis_contig104008.834.1 ID=mRNA_H-fluviatilis_contig104008.834.1|Name=mRNA_H-fluviatilis_contig104008.834.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=666bp|location=Sequence derived from alignment at H-fluviatilis_contig104008:130..692+ (Heribaudiella fluviatilis SAG_13_90)
ATGCCTTTAGCAGTGTGCCAAACCGATTCCTATCTGCAAAGCTTCACTGC
CAAGGTTGTGTCATGTGCCCCCACCGCCAAGGACGAGTCCAAGAAACGCG
ACAAACCCAAGAAGATGCCTTTAGCAGTGTGCCAAACCGATTCCTATCTG
CAAAGCTTCACTGCCAAGGTTGTGTCATGTGCCCCCACCGCCAAGGACGA
GTCCAAGAAACGCGACAAACCCAAGAAGGGGGAGAAGCCGGCAGAAGAGA
AAACGTACGACGTCCAATTGTCGGATACAGTGGGGAGAAGCCGGCAGAAG
AGAAAACGTACGACGTCCAATTGTCGGATACAGTGCTGTTCCCTGAAGGA
GGCTGTTCCCTGAAGGAGGTGGTCAGCCCTCCGATGTGGGGACGATCGAC
GGAGTGCCCGTCAAATTCGTGTATCGCCAACACACGTGGTCAGCCCTCCG
ATGTGGGGACGATCGACGGAGTGCCCGTCAAATTCGTGTATCGCCAACAC
ACGGACAAGGCGCACGGGGAGAGTGACGATGGCTCCGCCTGCGACCACGG
CGGCATGCATATGAGCAGCGACATGGAGGAGACGGGACAAGGCGCACGGG
GAGAGTGACGATGGCTCCGCCTGCGACCACGGCGGCATGCATATGAGCAG
CGACATGGAGGAGACG
back to top