mRNA_H-fluviatilis_contig10400.833.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10400.833.1
Unique NamemRNA_H-fluviatilis_contig10400.833.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig10400.833.1 vs. uniprot
Match: D8LRU4_ECTSI (MND1 family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU4_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 4.120e-95
Identity = 151/212 (71.23%), Postives = 174/212 (82.08%), Query Frame = 1
Query:    1 MVRKGLSADEKRDKILNIYHSTKTIYNLKEIEKAASKQGVVSQTSCYAAALPCMVQDINQALVDDGLVDMDKIGSSNFFWSFPSKVVVTRRNIVDSLTRDIVKHEENLAANKRKAEELEAERTSTEGRQEKLRRLRENRQRLQELAKEYETLKENDPAQLEKATTLTQVCKDGVNRWTDNTWCIKSWMVKTRGMSGADVDKYLQIKGDFDQV 636
            MV++GLS +EKRDK+L+IYHSTK IY+LKEIEKAASKQGV   T          V+D+NQ+LVDDGLVDMDKIG+SNFFWSFPSKV VT++N+VD+L + I K E+N AANKRK  ELE  R  T  R+EKL RL+EN  RLQEL KEYE+LKENDPA+LEK   LTQVCKDGVNRWTDN+WCIKSWMVKT+GMSG DVD+YLQIKGDFD V
Sbjct:    1 MVKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINT----------VKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTAANKRKFSELEEGRADTASRREKLGRLQENGLRLQELEKEYESLKENDPAELEKVARLTQVCKDGVNRWTDNSWCIKSWMVKTKGMSGKDVDRYLQIKGDFDLV 202          
BLAST of mRNA_H-fluviatilis_contig10400.833.1 vs. uniprot
Match: F5BX17_UNDPI (Meiotic nuclear division protein 1 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=F5BX17_UNDPI)

HSP 1 Score: 291 bits (745), Expect = 8.270e-95
Identity = 151/212 (71.23%), Postives = 173/212 (81.60%), Query Frame = 1
Query:    1 MVRKGLSADEKRDKILNIYHSTKTIYNLKEIEKAASKQGVVSQTSCYAAALPCMVQDINQALVDDGLVDMDKIGSSNFFWSFPSKVVVTRRNIVDSLTRDIVKHEENLAANKRKAEELEAERTSTEGRQEKLRRLRENRQRLQELAKEYETLKENDPAQLEKATTLTQVCKDGVNRWTDNTWCIKSWMVKTRGMSGADVDKYLQIKGDFDQV 636
            MV+KGLS +EKR KILNIYH TK+I++LKEIEKAASKQGVVSQT          ++D+NQ+LVDDGLVDMDKIG SNFFWSFPSK VV R+N++DSL RDI K E+  A NKRK   L  ER  TE RQ KLRRL++N+QR+++L  EYETLKENDPA+LEK T + +VCKDGVNRWTDNTW IKSWMVKTRGMSGADVDKYLQIK DFD V
Sbjct:    1 MVKKGLSLEEKRAKILNIYHGTKSIFSLKEIEKAASKQGVVSQT----------IKDVNQSLVDDGLVDMDKIGPSNFFWSFPSKAVVDRQNLIDSLKRDIAKAEDTAAVNKRKIASLVEERADTEERQLKLRRLQDNKQRVKQLESEYETLKENDPAELEKVTNVAEVCKDGVNRWTDNTWSIKSWMVKTRGMSGADVDKYLQIKADFDHV 202          
BLAST of mRNA_H-fluviatilis_contig10400.833.1 vs. uniprot
Match: A0A7S2XYC3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYC3_9STRA)

HSP 1 Score: 190 bits (482), Expect = 3.490e-55
Identity = 105/211 (49.76%), Postives = 140/211 (66.35%), Query Frame = 1
Query:    7 RKGLSADEKRDKILNIYHSTKTIYNLKEIEKAASKQGVVSQTSCYAAALPCMVQDINQALVDDGLVDMDKIGSSNFFWSFPSKVVVTRRNIVDSLTRDIVKHEENLAANKRKAEELE-AERTSTEGRQEKLRRLRENRQRLQELAKEYETLKENDPAQLEKATTLTQVCKDGVNRWTDNTWCIKSWMVKTRGMSGADVDKYLQIKGDFDQV 636
            RKGLS +EKR +IL IYHS+  +YNLKEIEK ASK GVV QT          ++D+NQ+L+DD LVD DKIGS+NFFWSFPSKV V ++  ++SL + I   +  L A + K  +LE A R  +  R+E L +L + R+R  EL +  + LKENDP +L +   L +  K+ VNRWTDN W +KSW VK +GM   DVD+Y+Q+  DFD +
Sbjct:    5 RKGLSLEEKRQRILGIYHSSGEVYNLKEIEKIASKAGVVLQT----------IKDVNQSLIDDHLVDADKIGSANFFWSFPSKVYVVKKTKIESLQKQIEDSKRQLNAAQDKVADLENAGRQDSNTRREGLAKLDQERKRGSELDERLQCLKENDPEELLRLKNLQEEIKEHVNRWTDNIWAVKSWCVKKKGMPSKDVDRYMQLPQDFDYI 205          
BLAST of mRNA_H-fluviatilis_contig10400.833.1 vs. uniprot
Match: H3HEE5_PHYRM (Uncharacterized protein n=24 Tax=Phytophthora TaxID=4783 RepID=H3HEE5_PHYRM)

HSP 1 Score: 182 bits (462), Expect = 3.040e-52
Identity = 102/212 (48.11%), Postives = 138/212 (65.09%), Query Frame = 1
Query:    1 MVRKGLSADEKRDKILNIYHSTKTIYNLKEIEKAASKQGVVSQTSCYAAALPCMVQDINQALVDDGLVDMDKIGSSNFFWSFPSKVVVTRRNIVDSLTRDIVKHEENLAANKRKAEELEAERTSTEGRQEKLRRLRENRQRLQELAKEYETLKENDPAQLEKATTLTQVCKDGVNRWTDNTWCIKSWMVKTRGMSGADVDKYLQIKGDFDQV 636
            M RKG+S  EKR++IL IYH +K ++NLKE+EK  SK GVV QT          V+D+NQALVDD LVD DKIGS N+FWSFPSK+  TRR  +  L +     ++ L   K+  E+ +  R  +E R +KLRRL E + ++Q L  + + L ENDP  LE+     ++ K+G +RWTDN + +KSW+VK RG+ G +VDK+L IK DFD V
Sbjct:    1 MPRKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQT----------VKDVNQALVDDVLVDCDKIGSGNYFWSFPSKLSQTRRRKLSELEQRHQTAQDKLVKVKQNVEKQKGLRPESEERVQKLRRLEEQKAKVQVLRTKVQHLAENDPEILEQLERKVRMAKEGSDRWTDNVYTLKSWVVKKRGVEGKEVDKWLGIKDDFDYV 202          
BLAST of mRNA_H-fluviatilis_contig10400.833.1 vs. uniprot
Match: A0A0P1AFA8_PLAHL (Protein involved in meiotic recombination/predicted coiled-coil protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AFA8_PLAHL)

HSP 1 Score: 181 bits (459), Expect = 8.510e-52
Identity = 100/212 (47.17%), Postives = 139/212 (65.57%), Query Frame = 1
Query:    1 MVRKGLSADEKRDKILNIYHSTKTIYNLKEIEKAASKQGVVSQTSCYAAALPCMVQDINQALVDDGLVDMDKIGSSNFFWSFPSKVVVTRRNIVDSLTRDIVKHEENLAANKRKAEELEAERTSTEGRQEKLRRLRENRQRLQELAKEYETLKENDPAQLEKATTLTQVCKDGVNRWTDNTWCIKSWMVKTRGMSGADVDKYLQIKGDFDQV 636
            M RKG+S  EKR++IL IYH +K ++NLKE+EK  SK GVV QT          V+D+NQALVDD LVD DKIGS N+FWSFPSK+  +R+  +  L +     +E L   K K EE +A R+ ++ R +KL+RL E + +++ L    + L ENDPA LE       + K+G +RWTDN + +KSW+VK RG+ G +V+K+L+I+ DFD V
Sbjct:    1 MPRKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQT----------VKDVNQALVDDALVDCDKIGSGNYFWSFPSKLSQSRKRKLSELEQCRQARQEKLDRVKEKIEEQQALRSDSDERIQKLKRLEELKVKVESLRNTMQHLAENDPAILEDLECKVGIAKEGADRWTDNVFTLKSWVVKKRGVEGKEVNKWLEIQDDFDYV 202          
BLAST of mRNA_H-fluviatilis_contig10400.833.1 vs. uniprot
Match: A0A8K1FKH2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKH2_PYTOL)

HSP 1 Score: 171 bits (434), Expect = 4.700e-48
Identity = 94/210 (44.76%), Postives = 136/210 (64.76%), Query Frame = 1
Query:    7 RKGLSADEKRDKILNIYHSTKTIYNLKEIEKAASKQGVVSQTSCYAAALPCMVQDINQALVDDGLVDMDKIGSSNFFWSFPSKVVVTRRNIVDSLTRDIVKHEENLAANKRKAEELEAERTSTEGRQEKLRRLRENRQRLQELAKEYETLKENDPAQLEKATTLTQVCKDGVNRWTDNTWCIKSWMVKTRGMSGADVDKYLQIKGDFDQV 636
            +KG+S +EKR++IL IYH +K +YN+KEIEK  +K GVV QT          ++D+NQALVDD LVD DKIGS N+FWSFPSKV   R+  +  L +      E L+  K++ E+ ++ RT ++ R  KL+RL E +  ++++  + + L +NDPA LE      QV K G +RWTDN + ++SW+ + RG S  +VDK+L IK DFD +
Sbjct:    5 KKGVSLEEKRERILKIYHESKDVYNIKEIEKLGAKAGVVLQT----------IKDVNQALVDDALVDFDKIGSGNYFWSFPSKVSQQRKRKLSELEQRKQSTSEQLSKVKQEVEKQKSLRTDSDDRVAKLQRLAELQTHVKDMKAKIQHLADNDPAILEHLERNMQVAKVGADRWTDNVYTVRSWVAQKRGCSTGEVDKWLGIKDDFDYI 204          
BLAST of mRNA_H-fluviatilis_contig10400.833.1 vs. uniprot
Match: A0A7S3XLC7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLC7_HETAK)

HSP 1 Score: 169 bits (428), Expect = 1.540e-47
Identity = 95/210 (45.24%), Postives = 126/210 (60.00%), Query Frame = 1
Query:    7 RKGLSADEKRDKILNIYHSTKTIYNLKEIEKAASKQGVVSQTSCYAAALPCMVQDINQALVDDGLVDMDKIGSSNFFWSFPSKVVVTRRNIVDSLTRDIVKHEENLAANKRKAEELEAERTSTEGRQEKLRRLRENRQRLQELAKEYETLKENDPAQLEKATTLTQVCKDGVNRWTDNTWCIKSWMVKTRGMSGADVDKYLQIKGDFDQV 636
            RKG+S +EKR +IL IYH  K + NLKE+EK   KQGVV Q+          ++++NQALVDD LVD DKIGS+NFFWSFPSKV                            AE L A R  T  R+ +L++L++ + R   L +  +TLKENDP +L +  T T+ CK+  NRWTDN W +KSW +K +GM+  +VD+YLQ+  DFD V
Sbjct:    5 RKGVSYEEKRTRILGIYHEKKEVLNLKELEKLGVKQGVVVQS----------IKEVNQALVDDNLVDTDKIGSANFFWSFPSKV----------------------------AELLGAGRHDTPQRRAQLQKLQDEKAREAALDQRLDTLKENDPRELARIETETEKCKEAANRWTDNIWALKSWCIKKKGMASTEVDRYLQLSSDFDYV 176          
BLAST of mRNA_H-fluviatilis_contig10400.833.1 vs. uniprot
Match: A0A5D6Y0R0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0R0_9STRA)

HSP 1 Score: 169 bits (428), Expect = 3.540e-47
Identity = 91/210 (43.33%), Postives = 138/210 (65.71%), Query Frame = 1
Query:    7 RKGLSADEKRDKILNIYHSTKTIYNLKEIEKAASKQGVVSQTSCYAAALPCMVQDINQALVDDGLVDMDKIGSSNFFWSFPSKVVVTRRNIVDSLTRDIVKHEENLAANKRKAEELEAERTSTEGRQEKLRRLRENRQRLQELAKEYETLKENDPAQLEKATTLTQVCKDGVNRWTDNTWCIKSWMVKTRGMSGADVDKYLQIKGDFDQV 636
            RKG+S +EKR +IL+IYH +K ++NLKE+EK  +K GVV QT          ++D+NQALVDDGLVD DKIGS N+FWSFPSK+   R+  +  L +     ++ LA  ++  +E +++RT ++ R  KL+RL E +  +++L  + + L +NDP  L +     QV K G +RWTDN + ++SW+ + RG + ++VDK+L IK DFD +
Sbjct:    4 RKGVSLEEKRARILHIYHDSKDVFNLKEVEKIGAKAGVVLQT----------IKDVNQALVDDGLVDCDKIGSGNYFWSFPSKLSQARKRKLGELEQRKAAAQDKLAKVRQSIDEQKSKRTESDDRAAKLQRLAELQASVKDLKAKVQHLADNDPEILAQLERSVQVAKIGADRWTDNVFTMRSWVAQKRGCASSEVDKWLGIKDDFDYI 203          
BLAST of mRNA_H-fluviatilis_contig10400.833.1 vs. uniprot
Match: A0A3M6VFI0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VFI0_9STRA)

HSP 1 Score: 174 bits (442), Expect = 2.270e-46
Identity = 100/206 (48.54%), Postives = 134/206 (65.05%), Query Frame = 1
Query:   19 SADEKRDKILNIYHSTKTIYNLKEIEKAASKQGVVSQTSCYAAALPCMVQDINQALVDDGLVDMDKIGSSNFFWSFPSKVVVTRRNIVDSLTRDIVKHEENLAANKRKAEELEAERTSTEGRQEKLRRLRENRQRLQELAKEYETLKENDPAQLEKATTLTQVCKDGVNRWTDNTWCIKSWMVKTRGMSGADVDKYLQIKGDFDQV 636
            +A EKR+++L IYH +K ++NLKEIEK  SK GVV QT          V+D+NQALVDD LVD DKIGS N+FWSFPSK+  +R+  ++ L +      E L   K+  EE +A R  +E R  KLRRL E + ++Q L  + + L ENDPA LE+    + V K+G +RWTDN + +KSW+V  RG+ G +VDK+L IK DFD V
Sbjct:  268 AAFEKRERLLRIYHESKEVFNLKEIEKLGSKAGVVLQT----------VKDVNQALVDDTLVDCDKIGSGNYFWSFPSKLSQSRKRKLNELEQRRQSLNEKLLRVKKSIEEQKALRLESEERVLKLRRLEEQKAKVQALRTKVQHLAENDPAMLEELERKSCVAKEGSDRWTDNVYTLKSWVVNKRGVEGREVDKWLGIKDDFDYV 463          
BLAST of mRNA_H-fluviatilis_contig10400.833.1 vs. uniprot
Match: A0A485L1B8_9STRA (Aste57867_14478 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L1B8_9STRA)

HSP 1 Score: 166 bits (419), Expect = 7.870e-46
Identity = 93/210 (44.29%), Postives = 129/210 (61.43%), Query Frame = 1
Query:    7 RKGLSADEKRDKILNIYHSTKTIYNLKEIEKAASKQGVVSQTSCYAAALPCMVQDINQALVDDGLVDMDKIGSSNFFWSFPSKVVVTRRNIVDSLTRDIVKHEENLAANKRKAEELEAERTSTEGRQEKLRRLRENRQRLQELAKEYETLKENDPAQLEKATTLTQVCKDGVNRWTDNTWCIKSWMVKTRGMSGADVDKYLQIKGDFDQV 636
            +KG+S DEKR++IL IYH T  +YNLKE+EK  SK GVV QT          ++D+NQALVDD LVD DKIGS N+FWSFPSKV   R+  ++ L     +    +   K+  E  +  RT +  R EKL RL   + +  +  ++   L ENDP  L+K     ++ K+GV+RWTDN + +KSW++K    S A+V+K+L +K DFD V
Sbjct:    5 KKGVSLDEKRERILKIYHDTLEVYNLKEVEKIGSKAGVVLQT----------IKDVNQALVDDSLVDTDKIGSGNYFWSFPSKVAQQRKRKLEDLEAKRTELRGKIETAKQTIEAQKHLRTDSADRVEKLNRLAALKTQNADTKQKLHLLSENDPDVLKKLEAKVKLAKEGVDRWTDNVFNLKSWVIKKNSCSSAEVEKWLGVKDDFDYV 204          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10400.833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRU4_ECTSI4.120e-9571.23MND1 family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
F5BX17_UNDPI8.270e-9571.23Meiotic nuclear division protein 1 n=1 Tax=Undaria... [more]
A0A7S2XYC3_9STRA3.490e-5549.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
H3HEE5_PHYRM3.040e-5248.11Uncharacterized protein n=24 Tax=Phytophthora TaxI... [more]
A0A0P1AFA8_PLAHL8.510e-5247.17Protein involved in meiotic recombination/predicte... [more]
A0A8K1FKH2_PYTOL4.700e-4844.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3XLC7_HETAK1.540e-4745.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5D6Y0R0_9STRA3.540e-4743.33Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3M6VFI0_9STRA2.270e-4648.54Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A485L1B8_9STRA7.870e-4644.29Aste57867_14478 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10400contigH-fluviatilis_contig10400:3269..6508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.1
Seed ortholog evalue1e-76
Seed eggNOG ortholog2880.D8LRU4
Preferred nameMND1
KEGG koko:K11997,ko:K22381
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009553,GO:0009555,GO:0009628,GO:0009987,GO:0010212,GO:0016043,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048229,GO:0048285,GO:0048856,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140013,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.homologous recombination
EggNOG OGsCOG5124@1,KOG3433@2759
EC2.3.2.27
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons5
Model size1199
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10400.833.1prot_H-fluviatilis_contig10400.833.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10400 3269..5948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929104.8680458-CDS-H-fluviatilis_contig10400:3268..34001622929104.8680458-CDS-H-fluviatilis_contig10400:3268..3400Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10400 3269..3400 +
1691135183.7404819-CDS-H-fluviatilis_contig10400:3268..34001691135183.7404819-CDS-H-fluviatilis_contig10400:3268..3400Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10400 3269..3400 +
1622929104.8848927-CDS-H-fluviatilis_contig10400:3929..41061622929104.8848927-CDS-H-fluviatilis_contig10400:3929..4106Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10400 3930..4106 +
1691135183.7539768-CDS-H-fluviatilis_contig10400:3929..41061691135183.7539768-CDS-H-fluviatilis_contig10400:3929..4106Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10400 3930..4106 +
1622929104.90821-CDS-H-fluviatilis_contig10400:4468..45811622929104.90821-CDS-H-fluviatilis_contig10400:4468..4581Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10400 4469..4581 +
1691135183.7620728-CDS-H-fluviatilis_contig10400:4468..45811691135183.7620728-CDS-H-fluviatilis_contig10400:4468..4581Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10400 4469..4581 +
1622929104.922099-CDS-H-fluviatilis_contig10400:4872..49541622929104.922099-CDS-H-fluviatilis_contig10400:4872..4954Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10400 4873..4954 +
1691135183.7701335-CDS-H-fluviatilis_contig10400:4872..49541691135183.7701335-CDS-H-fluviatilis_contig10400:4872..4954Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10400 4873..4954 +
1622929104.9344385-CDS-H-fluviatilis_contig10400:5813..59481622929104.9344385-CDS-H-fluviatilis_contig10400:5813..5948Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10400 5814..5948 +
1691135183.778327-CDS-H-fluviatilis_contig10400:5813..59481691135183.778327-CDS-H-fluviatilis_contig10400:5813..5948Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10400 5814..5948 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929104.9488301-UTR-H-fluviatilis_contig10400:5948..65081622929104.9488301-UTR-H-fluviatilis_contig10400:5948..6508Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10400 5949..6508 +
1691135183.787217-UTR-H-fluviatilis_contig10400:5948..65081691135183.787217-UTR-H-fluviatilis_contig10400:5948..6508Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10400 5949..6508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10400.833.1

>prot_H-fluviatilis_contig10400.833.1 ID=prot_H-fluviatilis_contig10400.833.1|Name=mRNA_H-fluviatilis_contig10400.833.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=213bp
MVRKGLSADEKRDKILNIYHSTKTIYNLKEIEKAASKQGVVSQTSCYAAA
LPCMVQDINQALVDDGLVDMDKIGSSNFFWSFPSKVVVTRRNIVDSLTRD
IVKHEENLAANKRKAEELEAERTSTEGRQEKLRRLRENRQRLQELAKEYE
TLKENDPAQLEKATTLTQVCKDGVNRWTDNTWCIKSWMVKTRGMSGADVD
KYLQIKGDFDQV*
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mRNA from alignment at H-fluviatilis_contig10400:3269..6508+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10400.833.1 ID=mRNA_H-fluviatilis_contig10400.833.1|Name=mRNA_H-fluviatilis_contig10400.833.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=3240bp|location=Sequence derived from alignment at H-fluviatilis_contig10400:3269..6508+ (Heribaudiella fluviatilis SAG_13_90)
ATGGTGAGGAAGGGGCTGTCGGCCGATGAGAAGCGAGACAAAATTCTCAA CATTTACCACTCCACCAAGACCATCTACAATTTGAAGGAGATCGAGAAGG CAGCATCGAAGCAGGGGGTCGTGTCTCAGACCGTCAAGGCAAGCGAGCTG TAGGTATTATTGCAGCCAAATGCAGTATAGTTGCATACGCAGTGCGTTCC GCACCAGTCACGAATACATGAAGTTAATGTCGTGAACGCAGCTCGAGGTG GAACAAGTGACAGCGCTAAAAATCGTGAGCATCAAGCTATTGCGTTGCCA ATTTGAAAAATTCCTCACATGCTACCCCGATGCCCTCTCGATCCCAGTGG CAACGCGATCACAGCACGGTACAGGGTTCATGCCAGTGCTATGATAGGCA TGTCAGTGTGTACTGCATCGTCTGTATGGCAGTGTCTCGTCTGCCAGCTG AAATTCACCTTGATTCGCCAGCTTTTTCGCATGCAATGTCGGGCGTTGTT GTTTTCTCTTGTGAGATTCAAATATTTGAATTTTTCAACTGCAATATCAC AACTTAAATCACGACATCGGTACGTATGCTAGCTTGGAAGCTGCGCGTGT GGCTCGCGGTGCTACGAAGTACGGAGTATCGTTTGAATACAACGCGCAGG ACTGACAAAAGTCATGCTACGCGGCCGCTCTTCCGTGCATGGTACAGGAT ATCAACCAAGCTCTGGTAGACGATGGCTTGGTGGATATGGACAAGATCGG GTCTTCTAATTTCTTTTGGTCCTTTCCAAGCAAAGTCGTCGTCACCAGGC GGAATATCGTCGATTCCCTCACCCGGGATATCGTGAAGGTACTGTTGCAC AGGCGTACTGCCTACACGCTCGCATCCCACCCCACGCATGCCAAAGCATT CGGTGCGAGGCGATGCTAGCCGACTATCTCTCGTGACAAGAAAGTGGCTG GAGGGCTGACCATGCGGCTGTAGTCATGTTATGCTGGCCCACCATCTCTC GTCACAAGAAAAAGTGACGAGATGGATGACCGTGCGGCTCTTTTTTGTCA ATCGCGGCAGCGAGTCGTGACCCGCGTGCGAAATGCCACAGTTCGACTTG ACTGGGGACATCGTCACTGAATCCGGTTCTTGGACACCCAATTTTCTGCT GACTTTTCCTGTGAATTTTGCGCGTTATTGGTCACACCGGAATTTCTCAG CACGAGGAAAATCTCGCAGCCAACAAGCGGAAAGCGGAGGAGCTCGAAGC AGAGCGCACAAGCACGGAGGGCAGACAAGAGAAGCTTCGACGACTACGAG AGAACCGACAACGGTGCGGCGAAATGTCGTAGAAGCACTTGCAGCGCTGG CTTCCACCTTACCTCGCGCAATTACGTTAATTATGTTGCAACGGCAGTGA CCGTCGAGACTCTTCTGATGTCCTCGTGGTGCCTATAACTATCATTCCGG GTCGCCAAACACTCATCGCATCCGTGAGCGCCCCAAGCACGCAAGACTTA CCAGGGGCTCACGTTCTTGGCAGTTGACGCCACACCGCTATCAATTGATG CTGAATAATCAAGCTGACGCCCTCGAACCTTCTTGCTGGACACTCGATAC GCAGGTTACAGGAACTGGCGAAGGAGTATGAAACTTTGAAGGAAAATGAC CCCGCTCAGCTGGAGAAAGCTACAACTCTTACGCAGGTAAGAACAACGCA AATGGCTACGCGTTTTGCCGGGAAGCTGCAGAAACTCGCAACATGTGCGC AGTGTTGATGTTGGTATGCGAAGCTATCTCACGATCATCACATAGACTCA CAGCCTTCCCCGTAGTTTCCCTATACCCTGCCAAGCGTATTGATGTTGAC TGGAGAGCACGCTTTTCCCGTTCCGAGTGTGAAAAAACCTGTCCCCTGAC TACATCATTGGTATCCACCGAATCAAGCAATGTGAGAGCTCGATAGGCTT GCCCAATGCTAGCTTGATTCCCTCATAAGTCACACTAAGAATCAAGACAG AACCAACACTGGAGTCAGGACATCGCCTTCGCCGCAGCCAGGCTTCCATG GGATTATCCCGTTCTCATATGGCGTCGGACGGTTGCTGTCGTTCATCTAC GTACGTTCGTGGATGGTTTGTCCCTCGTGGAACCACCCGCCCCTCGTCAT GCATTATTCCTGTGTTCAGAAAAAAACGTACCTTGCTCTATCACCGAATG CCCGTATGTGAACAGCGTAAATCTTCTCCATATCTCCGAGTATCGTCATC CGTGGCAGGCACCACAGTTTCGGACGGGTAGACGCCGATACTAACCGACA GCGGCTCTTCGTTTTGAACCACTATCAAAGAGGTGTCGACATTGTACTGT ATAGGCTCTATGGCTCCCCGCTGGCATTTTGACTACACTCCCTGGGCAAA CGTATGTCTTGAACCTTTGTACTCTGCTGTGGCCCTTTGGCAGCGAGTCA ATAGGTTGAACGACACCAATACAGCCGCGGTCTCTTTTCAACGATTCTCA CAACCCAGTCGCCCATATTTTGTTTTTTGTCTTGATACTCATAAGGTGTG TAAGGATGGCGTGAATCGCTGGACCGACAACACATGGTGCATAAAGAGCT GGATGGTGAAGACGAGGGGCATGAGCGGAGCAGACGTAGACAAATATCTG CAGATCAAGGGCGACTTTGATCAAGTGTGATTGCTTTGTCGACACCATCT TGTTTGTTCCTGAGTCGGTCGCTCTCGGATGGAGGATTCGTTACTTGATT GCATATACTGGTATTTTTCTTTGTTGGGCAGAAGGCGCGGCCACGTGTTT GGTACTATCGAGTTGCTGGTCGTTGGCCTTTCTTTCAAAGTTCGAACTAC ATGGTGTTTGTCATGCTGGTTTGAGCGGGTAGGTAGGTAGAGTGGATTGG GAGCTTCGCGTTTTGTTGTTTTGGAGGGGCGACGGGTTAGCGCGAAAGGT GCAAATATTGTATCATACAATCAGTACTCTTAACAGCTCCGTCTGATCCT CTAGCTGGAACATTTGTGCGATTGGGCTGAGACTCCCAACTAGCTTGTAC GGTAGACAGTGTCCATGAAGGCTCCTGCGAGCTTGAAACATGGACCGATT TTGGAACACACACTTGTTTTCCACGCGTCCGCATGGAACACACAGCCCAA TACTTTATGCCGAATGAGAGGTGAGAGTGAAACGCGCATGCTTGCCGCGA TGTAATTTCAAAACGAAAGACTAATGTTGTTCGGTTAACG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10400:3269..6508+

>mRNA_H-fluviatilis_contig10400.833.1 ID=mRNA_H-fluviatilis_contig10400.833.1|Name=mRNA_H-fluviatilis_contig10400.833.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1278bp|location=Sequence derived from alignment at H-fluviatilis_contig10400:3269..6508+ (Heribaudiella fluviatilis SAG_13_90)
ATGGTGAGGAAGGGGCTGTCGGCCGATGAGAAGCGAGACAAAATTCTCAA
CATTTACCACTCCACCAAGACCATCTACAATTTGAAGGAGATCGAGAAGG
CAGCATCGAAGCAGGGGGTCGTGTCTCAGACCATGGTGAGGAAGGGGCTG
TCGGCCGATGAGAAGCGAGACAAAATTCTCAACATTTACCACTCCACCAA
GACCATCTACAATTTGAAGGAGATCGAGAAGGCAGCATCGAAGCAGGGGG
TCGTGTCTCAGACCTCATGCTACGCGGCCGCTCTTCCGTGCATGGTACAG
GATATCAACCAAGCTCTGGTAGACGATGGCTTGGTGGATATGGACAAGAT
CGGGTCTTCTAATTTCTTTTGGTCCTTTCCAAGCAAAGTCGTCGTCACCA
GGCGGAATATCGTCGATTCCCTCACCCGGGATATCGTGAAGTCATGCTAC
GCGGCCGCTCTTCCGTGCATGGTACAGGATATCAACCAAGCTCTGGTAGA
CGATGGCTTGGTGGATATGGACAAGATCGGGTCTTCTAATTTCTTTTGGT
CCTTTCCAAGCAAAGTCGTCGTCACCAGGCGGAATATCGTCGATTCCCTC
ACCCGGGATATCGTGAAGCACGAGGAAAATCTCGCAGCCAACAAGCGGAA
AGCGGAGGAGCTCGAAGCAGAGCGCACAAGCACGGAGGGCAGACAAGAGA
AGCTTCGACGACTACGAGAGAACCGACAACGCACGAGGAAAATCTCGCAG
CCAACAAGCGGAAAGCGGAGGAGCTCGAAGCAGAGCGCACAAGCACGGAG
GGCAGACAAGAGAAGCTTCGACGACTACGAGAGAACCGACAACGGTTACA
GGAACTGGCGAAGGAGTATGAAACTTTGAAGGAAAATGACCCCGCTCAGC
TGGAGAAAGCTACAACTCTTACGCAGGTTACAGGAACTGGCGAAGGAGTA
TGAAACTTTGAAGGAAAATGACCCCGCTCAGCTGGAGAAAGCTACAACTC
TTACGCAGGTGTGTAAGGATGGCGTGAATCGCTGGACCGACAACACATGG
TGCATAAAGAGCTGGATGGTGAAGACGAGGGGCATGAGCGGAGCAGACGT
AGACAAATATCTGCAGATCAAGGGCGACTTTGATCAAGTGTGAGTGTGTA
AGGATGGCGTGAATCGCTGGACCGACAACACATGGTGCATAAAGAGCTGG
ATGGTGAAGACGAGGGGCATGAGCGGAGCAGACGTAGACAAATATCTGCA
GATCAAGGGCGACTTTGATCAAGTGTGA
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