mRNA_H-fluviatilis_contig10395.819.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10395.819.1
Unique NamemRNA_H-fluviatilis_contig10395.819.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10395.819.1 vs. uniprot
Match: A0A6H5L056_9PHAE (NUC194 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L056_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 5.430e-6
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 2 
Query:    2 ISHLMSVSSHPKGQKPMLRANMELVAALVGLFGE 103
            +SHLMSV+S P G+ PMLRAN+ LVA LVGLFG+
Sbjct: 2368 VSHLMSVASCPDGKTPMLRANVLLVAGLVGLFGD 2401
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10395.819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L056_9PHAE5.430e-670.59NUC194 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10395contigH-fluviatilis_contig10395:4325..5419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size194
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10395.819.1prot_H-fluviatilis_contig10395.819.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10395 4338..5419 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.9566872-UTR-H-fluviatilis_contig10395:4324..43371622929102.9566872-UTR-H-fluviatilis_contig10395:4324..4337Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10395 4325..4337 +
1691135182.798837-UTR-H-fluviatilis_contig10395:4324..43371691135182.798837-UTR-H-fluviatilis_contig10395:4324..4337Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10395 4325..4337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.96896-CDS-H-fluviatilis_contig10395:4337..44821622929102.96896-CDS-H-fluviatilis_contig10395:4337..4482Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10395 4338..4482 +
1691135182.8179762-CDS-H-fluviatilis_contig10395:4337..44821691135182.8179762-CDS-H-fluviatilis_contig10395:4337..4482Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10395 4338..4482 +
1622929102.9829347-CDS-H-fluviatilis_contig10395:5384..54191622929102.9829347-CDS-H-fluviatilis_contig10395:5384..5419Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10395 5385..5419 +
1691135182.8286896-CDS-H-fluviatilis_contig10395:5384..54191691135182.8286896-CDS-H-fluviatilis_contig10395:5384..5419Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10395 5385..5419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10395.819.1

>prot_H-fluviatilis_contig10395.819.1 ID=prot_H-fluviatilis_contig10395.819.1|Name=mRNA_H-fluviatilis_contig10395.819.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=60bp
MSVSSHPKGQKPMLRANMELVAALVGLFGEPSEDTDEGAENAMNEDDKGR
GGDSRRNDLR
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mRNA from alignment at H-fluviatilis_contig10395:4325..5419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10395.819.1 ID=mRNA_H-fluviatilis_contig10395.819.1|Name=mRNA_H-fluviatilis_contig10395.819.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=1095bp|location=Sequence derived from alignment at H-fluviatilis_contig10395:4325..5419+ (Heribaudiella fluviatilis SAG_13_90)
GATATCGCACCTCATGTCAGTATCCAGTCACCCCAAGGGCCAGAAACCGA
TGCTGCGGGCAAATATGGAGCTCGTAGCCGCATTGGTCGGTCTCTTCGGA
GAACCGTCCGAAGATACGGACGAAGGTGCAGAAAATGCAATGAACGAAGA
TGACAAGGGTGAGCACGTTCGTGAAAAAGATGAAAACGTTTCGAATGGCG
CACGGCTGTGTTTCACCGCCGGCGCCACCACCGACGTGACGATCACAAGC
GTCCGCATGCCACGCTTGAACTCTTTCTACACACCGTGACTTGCGAATTC
GTGTTCGGCTCGAAATAGAGCCGAAGTTTGAGAAGCGGCGCACATAGTAT
CGCTTCCGTCACAATGTCGCACCAAATAGCTGTTCGAAACACTCCAAACA
TCACATGATCGTGTTTACTCTGTCCGCTCGCGAGATCTGCCAAACCCGGT
CGAGGTGCGTAGCAGGCGCGCTGCGTCGCGCTTTACGGACGTCGAAACCC
CGTTCTGTGACATGGCTCACAGTGCAAATAGTTCAAACCGTGTGGCGAAA
ACTGGCTAGAAGCGACTTCCTTCCGCGGTCGAAGAAACGACCCTCAGATT
GTCCAGCTGTCCCTGAGTTGGGAAGCGAACTTTTTCGTGGCACTAAAAGT
ATGCCACAATATTAGGTGATGGGAGTCGGCGTTGGAGGGAAAATAAACTG
GAACGCTCCGTCGCAGCTCTTGTGAGGATGCTAATTGTTCCATGATGGCG
ACTGCTGCCGCCGGTTGTTTCAATCGAATGTTGCAACGAAATGGCTTTGA
TAGCCGATGATGCAATTGCACTTGTCTACCAACGCGATATCTCGATGGCG
ATCTCAAAAGGCATGCTTGCAGCAGGTGCGTGTGTACACTGTAGTTCTGC
ACTATGTGGGGATTGTATGGGGATACATTCGTTAGGCTCCGAGATTGACT
CGTGTCTTCTCAGGAAGAGTCACGTCGAGGGCTTAGCTCCCATCCAGCAG
TGTCTGATGACATGGCAATCTTCTCCGCTCGCTGTGGCCACTATCCTGCC
CTTGGCGTAGGTCGGGGGGGCGATTCTAGAAGGAATGATCTTCGG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10395:4325..5419+

>mRNA_H-fluviatilis_contig10395.819.1 ID=mRNA_H-fluviatilis_contig10395.819.1|Name=mRNA_H-fluviatilis_contig10395.819.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=360bp|location=Sequence derived from alignment at H-fluviatilis_contig10395:4325..5419+ (Heribaudiella fluviatilis SAG_13_90)
ATGTCAGTATCCAGTCACCCCAAGGGCCAGAAACCGATGCTGCGGGCAAA
TATGGAGCTCGTAGCCGCATTGGTCGGTCTCTTCGGAGAACCGTCCGAAG
ATACGGACGAAGGTGCAGAAAATGCAATGAACGAAGATGACAAGGATGTC
AGTATCCAGTCACCCCAAGGGCCAGAAACCGATGCTGCGGGCAAATATGG
AGCTCGTAGCCGCATTGGTCGGTCTCTTCGGAGAACCGTCCGAAGATACG
GACGAAGGTGCAGAAAATGCAATGAACGAAGATGACAAGGGTCGGGGGGG
CGATTCTAGAAGGAATGATCTTCGGGTCGGGGGGGCGATTCTAGAAGGAA
TGATCTTCGG
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