mRNA_H-fluviatilis_contig10394.816.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10394.816.1
Unique NamemRNA_H-fluviatilis_contig10394.816.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10394.816.1 vs. uniprot
Match: UPI000329305A (ribonuclease H2 subunit C n=1 Tax=Dasypus novemcinctus TaxID=9361 RepID=UPI000329305A)

HSP 1 Score: 53.9 bits (128), Expect = 2.640e-6
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:  103 KQRVQITVPAKL--PAPATVHLLPCAIDYSGPAPVSAFFXXXXXXXXXXXPGVYFTAAFRGRQLTGPLVRLPSDVAGWILAPGDNME 357
            +QRV +  PA L   APAT+HLLPCA+  + PAPVS FF                  +FRGR+L G  V +P  + G+++A  ++ E
Sbjct:   11 RQRVHVR-PATLRRAAPATLHLLPCAVPRNRPAPVSRFFTPAVRRGPDG-----LEVSFRGRRLRGEEVEVPPGLVGYVMATEEDGE 91
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BLAST of mRNA_H-fluviatilis_contig10394.816.1 vs. uniprot
Match: UPI0003345F21 (ribonuclease H2 subunit C n=1 Tax=Condylura cristata TaxID=143302 RepID=UPI0003345F21)

HSP 1 Score: 51.2 bits (121), Expect = 2.510e-5
Identity = 42/112 (37.50%), Postives = 54/112 (48.21%), Query Frame = 1 
Query:   88 SSDEA---KQRVQITVPAKL--PAPATVHLLPCAIDYSGPAPVSAFFXXXXXXXXXXXPGVYFTAAFRGRQLTGPLVRLPSDVAGWIL-------APGDNMEDVDAEESVAQ 387
            SSDE    KQRV +  P  L   AP T+HLLPC I  S PAPV  +F                 A+FRGR L G  VR+P  + G+++       APG+      AE+  A+
Sbjct:    3 SSDERAVEKQRVHLR-PDTLRDAAPGTLHLLPCEIPVSRPAPVGCYFTPAIRQGAHG-----LEASFRGRSLRGEEVRVPPGLVGYVVMEEEGAVAPGEPYLSGSAEQEPAE 108
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BLAST of mRNA_H-fluviatilis_contig10394.816.1 vs. uniprot
Match: G3IDM7_CRIGR (RNASEH2C n=3 Tax=Cricetinae TaxID=10026 RepID=G3IDM7_CRIGR)

HSP 1 Score: 50.4 bits (119), Expect = 4.930e-5
Identity = 34/87 (39.08%), Postives = 45/87 (51.72%), Query Frame = 1 
Query:   88 SSDEA---KQRVQITVPA-KLPAPATVHLLPCAIDYSGPAPVSAFFXXXXXXXXXXXPGVYFTAAFRGRQLTGPLVRLPSDVAGWIL 336
            SSDEA   KQRV +   + +  APAT+HLLPC +  S PAPV  FF                  +FRGR L G  V +P   +G+++
Sbjct:    3 SSDEAADSKQRVHLRPDSLRAAAPATLHLLPCEVQVSRPAPVERFFTPAVRHGVDG-----LQVSFRGRGLRGEEVAVPPGFSGFVM 84
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BLAST of mRNA_H-fluviatilis_contig10394.816.1 vs. uniprot
Match: A0A4X1UL22_PIG (Ribonuclease H2 subunit C n=4 Tax=Sus scrofa TaxID=9823 RepID=A0A4X1UL22_PIG)

HSP 1 Score: 50.4 bits (119), Expect = 5.000e-5
Identity = 28/67 (41.79%), Postives = 36/67 (53.73%), Query Frame = 1 
Query:  139 PAPATVHLLPCAIDYSGPAPVSAFFXXXXXXXXXXXPGVY-FTAAFRGRQLTGPLVRLPSDVAGWIL 336
            PAP T+HLLPC +  S PAPV  FF            G Y   A+FRGR L G  V +P  + G+++
Sbjct:   24 PAPVTLHLLPCEVPVSRPAPVGRFFTPAIRQ------GPYGLEASFRGRSLRGEEVAVPPGLVGYVM 84
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BLAST of mRNA_H-fluviatilis_contig10394.816.1 vs. uniprot
Match: A0A8C5L0D4_JACJA (Ribonuclease H2 subunit C n=2 Tax=Jaculus jaculus TaxID=51337 RepID=A0A8C5L0D4_JACJA)

HSP 1 Score: 50.1 bits (118), Expect = 6.680e-5
Identity = 33/80 (41.25%), Postives = 42/80 (52.50%), Query Frame = 1 
Query:  103 KQRVQITVPAKL--PAPATVHLLPCAIDYSGPAPVSAFFXXXXXXXXXXXPGVYFTAAFRGRQLTGPLVRLPSDVAGWIL 336
            KQRV +  PA L    PAT+HLLPC +  S PAPV  FF            G     +FRGR L G  V +P  +AG+++
Sbjct:   11 KQRVHLR-PASLRDAVPATLHLLPCEVLVSRPAPVERFFTPAIRQG-----GDGLQVSFRGRSLRGEEVAVPPGLAGYVM 84
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BLAST of mRNA_H-fluviatilis_contig10394.816.1 vs. uniprot
Match: A0A8C3WMI0_9CETA (Ribonuclease H2 subunit C n=2 Tax=Suina TaxID=35497 RepID=A0A8C3WMI0_9CETA)

HSP 1 Score: 50.1 bits (118), Expect = 7.420e-5
Identity = 29/67 (43.28%), Postives = 36/67 (53.73%), Query Frame = 1 
Query:  139 PAPATVHLLPCAIDYSGPAPVSAFFXXXXXXXXXXXPGVY-FTAAFRGRQLTGPLVRLPSDVAGWIL 336
            PAP T+HLLPC I  S PAPV  FF            G Y   A+FRGR L G  V +P  + G+++
Sbjct:   24 PAPVTLHLLPCEIPVSRPAPVERFFTPAIRQ------GPYGLEASFRGRSLRGEEVVVPPGLVGYVM 84
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BLAST of mRNA_H-fluviatilis_contig10394.816.1 vs. uniprot
Match: UPI001E8B244D (ribonuclease H2 subunit C n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI001E8B244D)

HSP 1 Score: 49.3 bits (116), Expect = 9.380e-5
Identity = 25/64 (39.06%), Postives = 33/64 (51.56%), Query Frame = 1 
Query:  154 VHLLPCAIDYSGPAPVSAFFXXXXXXXXXXXPGVYFTAAFRGRQLTGPLVRLPSDVAGWILAPG 345
            +HLLPCA+ + G APV  +F           PG   T +FRGR L G  V +P+   G +L  G
Sbjct:   24 LHLLPCAVQHDGAAPVQRYFSPAIRGPQE--PGAESTVSFRGRMLKGKQVLVPNGYVGLVLEEG 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10394.816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI000329305A2.640e-639.08ribonuclease H2 subunit C n=1 Tax=Dasypus novemcin... [more]
UPI0003345F212.510e-537.50ribonuclease H2 subunit C n=1 Tax=Condylura crista... [more]
G3IDM7_CRIGR4.930e-539.08RNASEH2C n=3 Tax=Cricetinae TaxID=10026 RepID=G3ID... [more]
A0A4X1UL22_PIG5.000e-541.79Ribonuclease H2 subunit C n=4 Tax=Sus scrofa TaxID... [more]
A0A8C5L0D4_JACJA6.680e-541.25Ribonuclease H2 subunit C n=2 Tax=Jaculus jaculus ... [more]
A0A8C3WMI0_9CETA7.420e-543.28Ribonuclease H2 subunit C n=2 Tax=Suina TaxID=3549... [more]
UPI001E8B244D9.380e-539.06ribonuclease H2 subunit C n=1 Tax=Sphaerodactylus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10394contigH-fluviatilis_contig10394:3950..4401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size395
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10394.816.1prot_H-fluviatilis_contig10394.816.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10394 3983..4401 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.3504372-UTR-H-fluviatilis_contig10394:3949..39821622929102.3504372-UTR-H-fluviatilis_contig10394:3949..3982Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10394 3950..3982 +
1691135182.465842-UTR-H-fluviatilis_contig10394:3949..39821691135182.465842-UTR-H-fluviatilis_contig10394:3949..3982Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10394 3950..3982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.363776-CDS-H-fluviatilis_contig10394:3982..41801622929102.363776-CDS-H-fluviatilis_contig10394:3982..4180Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 3983..4180 +
1691135182.4796307-CDS-H-fluviatilis_contig10394:3982..41801691135182.4796307-CDS-H-fluviatilis_contig10394:3982..4180Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 3983..4180 +
1622929102.3826334-CDS-H-fluviatilis_contig10394:4208..43021622929102.3826334-CDS-H-fluviatilis_contig10394:4208..4302Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 4209..4302 +
1691135182.4944139-CDS-H-fluviatilis_contig10394:4208..43021691135182.4944139-CDS-H-fluviatilis_contig10394:4208..4302Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 4209..4302 +
1622929102.3955226-CDS-H-fluviatilis_contig10394:4333..44011622929102.3955226-CDS-H-fluviatilis_contig10394:4333..4401Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 4334..4401 +
1691135182.508484-CDS-H-fluviatilis_contig10394:4333..44011691135182.508484-CDS-H-fluviatilis_contig10394:4333..4401Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 4334..4401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10394.816.1

>prot_H-fluviatilis_contig10394.816.1 ID=prot_H-fluviatilis_contig10394.816.1|Name=mRNA_H-fluviatilis_contig10394.816.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=120bp
MEAEAPDLDSLDETPDIISSDEAKQRVQITVPAKLPAPATVHLLPCAIDY
SGPAPVSAFFHLTPVSDDKAGPGVYFTAAFRGRQLTGPLVRLPSDVAGWI
LAPGDNMEDVDAEESVAQRK
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mRNA from alignment at H-fluviatilis_contig10394:3950..4401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10394.816.1 ID=mRNA_H-fluviatilis_contig10394.816.1|Name=mRNA_H-fluviatilis_contig10394.816.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=452bp|location=Sequence derived from alignment at H-fluviatilis_contig10394:3950..4401+ (Heribaudiella fluviatilis SAG_13_90)
TGAAAGGCCGCGGTTCCCCCTTCTTCAATTGTCATGGAGGCGGAGGCACC
CGATCTAGACAGCCTGGATGAGACACCTGATATTATTTCATCGGATGAAG
CAAAGCAGCGCGTGCAAATCACTGTACCTGCTAAGCTTCCCGCTCCTGCC
ACGGTGCACCTGCTGCCTTGTGCAATTGACTACTCTGGGCCAGCTCCCGT
CTCTGCGTTTTTCCACCTGACACCTGTTTCGGTTGCCAACGAATCGTTTG
AGAATGCAGGATGACAAGGCAGGCCCTGGTGTGTACTTCACCGCTGCATT
CCGGGGCAGGCAGCTCACTGGACCGTTGGTCCGGCTTCCGAGTGACGTTG
CAGGTATTTTTCGTGTCGACTTTGATCAGTGCAGGATGGATACTAGCCCC
AGGAGACAACATGGAGGATGTCGATGCAGAAGAGAGTGTGGCTCAGCGCA
AG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10394:3950..4401+

>mRNA_H-fluviatilis_contig10394.816.1 ID=mRNA_H-fluviatilis_contig10394.816.1|Name=mRNA_H-fluviatilis_contig10394.816.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=720bp|location=Sequence derived from alignment at H-fluviatilis_contig10394:3950..4401+ (Heribaudiella fluviatilis SAG_13_90)
ATGGAGGCGGAGGCACCCGATCTAGACAGCCTGGATGAGACACCTGATAT
TATTTCATCGGATGAAGCAAAGCAGCGCGTGCAAATCACTGTACCTGCTA
AGCTTCCCGCTCCTGCCACGGTGCACCTGCTGCCTTGTGCAATTGACTAC
TCTGGGCCAGCTCCCGTCTCTGCGTTTTTCCACCTGACACCTGTTTCGAT
GGAGGCGGAGGCACCCGATCTAGACAGCCTGGATGAGACACCTGATATTA
TTTCATCGGATGAAGCAAAGCAGCGCGTGCAAATCACTGTACCTGCTAAG
CTTCCCGCTCCTGCCACGGTGCACCTGCTGCCTTGTGCAATTGACTACTC
TGGGCCAGCTCCCGTCTCTGCGTTTTTCCACCTGACACCTGTTTCGGATG
ACAAGGCAGGCCCTGGTGTGTACTTCACCGCTGCATTCCGGGGCAGGCAG
CTCACTGGACCGTTGGTCCGGCTTCCGAGTGACGTTGCAGGATGACAAGG
CAGGCCCTGGTGTGTACTTCACCGCTGCATTCCGGGGCAGGCAGCTCACT
GGACCGTTGGTCCGGCTTCCGAGTGACGTTGCAGGATGGATACTAGCCCC
AGGAGACAACATGGAGGATGTCGATGCAGAAGAGAGTGTGGCTCAGCGCA
AGGATGGATACTAGCCCCAGGAGACAACATGGAGGATGTCGATGCAGAAG
AGAGTGTGGCTCAGCGCAAG
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