mRNA_H-fluviatilis_contig10394.815.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10394.815.1
Unique NamemRNA_H-fluviatilis_contig10394.815.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10394.815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10394contigH-fluviatilis_contig10394:3179..3909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score77.8
Seed ortholog evalue6.4e-12
Seed eggNOG ortholog9601.ENSPPYP00000022954
Preferred nameBRWD3
KEGG koko:K11798
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006996,GO:0007010,GO:0008150,GO:0008360,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0019219,GO:0019222,GO:0022603,GO:0022604,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0065008,GO:0071840,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.Bromodomain and WD repeat domain containing 3
EggNOG OGs35G7F@314146,38CE8@33154,3BB2M@33208,3CYU5@33213,3J74X@40674,47Z32@7711,48XFP@7742,4M7FC@9443,4MT77@9604,COG2319@1,KOG0644@2759
COG Functional cat.S
Best tax levelHominidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons5
Model size604
Cds size603
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10394.815.1prot_H-fluviatilis_contig10394.815.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10394 3180..3909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.623847-CDS-H-fluviatilis_contig10394:3179..32541622929102.623847-CDS-H-fluviatilis_contig10394:3179..3254Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 3180..3254 -
1691135182.6169977-CDS-H-fluviatilis_contig10394:3179..32541691135182.6169977-CDS-H-fluviatilis_contig10394:3179..3254Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 3180..3254 -
1622929102.6350386-CDS-H-fluviatilis_contig10394:3282..33831622929102.6350386-CDS-H-fluviatilis_contig10394:3282..3383Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 3283..3383 -
1691135182.6290371-CDS-H-fluviatilis_contig10394:3282..33831691135182.6290371-CDS-H-fluviatilis_contig10394:3282..3383Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 3283..3383 -
1622929102.649969-CDS-H-fluviatilis_contig10394:3427..36231622929102.649969-CDS-H-fluviatilis_contig10394:3427..3623Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 3428..3623 -
1691135182.6375985-CDS-H-fluviatilis_contig10394:3427..36231691135182.6375985-CDS-H-fluviatilis_contig10394:3427..3623Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 3428..3623 -
1622929102.6688101-CDS-H-fluviatilis_contig10394:3650..37991622929102.6688101-CDS-H-fluviatilis_contig10394:3650..3799Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 3651..3799 -
1691135182.6463218-CDS-H-fluviatilis_contig10394:3650..37991691135182.6463218-CDS-H-fluviatilis_contig10394:3650..3799Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 3651..3799 -
1622929102.6839116-CDS-H-fluviatilis_contig10394:3827..39091622929102.6839116-CDS-H-fluviatilis_contig10394:3827..3909Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 3828..3909 -
1691135182.6546547-CDS-H-fluviatilis_contig10394:3827..39091691135182.6546547-CDS-H-fluviatilis_contig10394:3827..3909Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 3828..3909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10394.815.1

>prot_H-fluviatilis_contig10394.815.1 ID=prot_H-fluviatilis_contig10394.815.1|Name=mRNA_H-fluviatilis_contig10394.815.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=201bp
VELHVGSHGWVFRQGRLVTLICAVMENDIYLLILHHLSAYRFTATSQALV
TELTDKHLLPSSYTWEGKLRPSSVESIRSGLGWVPPDYLIRLLQQLTTTV
ISKQLGGDLPIGLLERGRSTLLPGLRVFPLTDDVTHTTKSQLYRGLRVRE
IGLPRANFRDKFPRLPPPSLYKRFRKMKTTSGHCGPVYCVAFDQTGTRIV
T
back to top

mRNA from alignment at H-fluviatilis_contig10394:3179..3909-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10394.815.1 ID=mRNA_H-fluviatilis_contig10394.815.1|Name=mRNA_H-fluviatilis_contig10394.815.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=731bp|location=Sequence derived from alignment at H-fluviatilis_contig10394:3179..3909- (Heribaudiella fluviatilis SAG_13_90)
GTCGAATTACATGTGGGCTCTCATGGGTGGGTTTTTCGTCAGGGGAGATT
GGTGACCCTCATTTGTGCAGTGATGGAGAATGGTCTCGTTGTGTAGCTTA
CAAGTTTTAGATATATATCTCCTGATCTTGCACCATCTGTCAGCTTATCG
CTTCACCGCGACTTCCCAGGCACTGGTGACCGAGTTAACGGACAAGCACC
TTTTGCCCAGCAGCTACACATGGGAAGGCAAACTGCGACCGTCATCAGTG
GAGTCGATTGTAAGCATCTATTGTTGTTATCTGCAGCGATCGGGTCTGGG
CTGGGTTCCTCCCGACTATCTCATTCGGCTACTGCAACAACTTACAACGA
CCGTGATATCGAAGCAACTCGGTGGTGACCTTCCCATTGGGCTGTTAGAG
CGAGGACGATCAACGCTGTTGCCAGGGCTGAGGGTGTTCCCTCTGACTGA
CGATGTCACCCACACCACCAAGTCACAGCTATGTACGTGCACTGTTGAGT
TGTGTTGATCGATGGCTTTTTAACAGACCGTGGTCTGCGAGTTCGTGAGA
TCGGGCTACCCAGAGCAAATTTTCGCGACAAGTTTCCCCGATTGCCCCCT
CCCAGCCTGTACAAGCGATTTCGAAAGGTATGTCGCTGTATGCAATGCAC
GCTAGATGAAAACGACCTCTGGGCACTGCGGCCCGGTGTATTGTGTGGCG
TTTGATCAAACGGGAACCCGGATTGTCACGG
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig10394:3179..3909-

>mRNA_H-fluviatilis_contig10394.815.1 ID=mRNA_H-fluviatilis_contig10394.815.1|Name=mRNA_H-fluviatilis_contig10394.815.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1206bp|location=Sequence derived from alignment at H-fluviatilis_contig10394:3179..3909- (Heribaudiella fluviatilis SAG_13_90)
GTCGAATTACATGTGGGCTCTCATGGGTGGGTTTTTCGTCAGGGGAGATT
GGTGACCCTCATTTGTGCAGTGATGGAGAATGGTCGAATTACATGTGGGC
TCTCATGGGTGGGTTTTTCGTCAGGGGAGATTGGTGACCCTCATTTGTGC
AGTGATGGAGAATGATATATATCTCCTGATCTTGCACCATCTGTCAGCTT
ATCGCTTCACCGCGACTTCCCAGGCACTGGTGACCGAGTTAACGGACAAG
CACCTTTTGCCCAGCAGCTACACATGGGAAGGCAAACTGCGACCGTCATC
AGTGGAGTCGATTATATATATCTCCTGATCTTGCACCATCTGTCAGCTTA
TCGCTTCACCGCGACTTCCCAGGCACTGGTGACCGAGTTAACGGACAAGC
ACCTTTTGCCCAGCAGCTACACATGGGAAGGCAAACTGCGACCGTCATCA
GTGGAGTCGATTCGATCGGGTCTGGGCTGGGTTCCTCCCGACTATCTCAT
TCGGCTACTGCAACAACTTACAACGACCGTGATATCGAAGCAACTCGGTG
GTGACCTTCCCATTGGGCTGTTAGAGCGAGGACGATCAACGCTGTTGCCA
GGGCTGAGGGTGTTCCCTCTGACTGACGATGTCACCCACACCACCAAGTC
ACAGCTATCGATCGGGTCTGGGCTGGGTTCCTCCCGACTATCTCATTCGG
CTACTGCAACAACTTACAACGACCGTGATATCGAAGCAACTCGGTGGTGA
CCTTCCCATTGGGCTGTTAGAGCGAGGACGATCAACGCTGTTGCCAGGGC
TGAGGGTGTTCCCTCTGACTGACGATGTCACCCACACCACCAAGTCACAG
CTATACCGTGGTCTGCGAGTTCGTGAGATCGGGCTACCCAGAGCAAATTT
TCGCGACAAGTTTCCCCGATTGCCCCCTCCCAGCCTGTACAAGCGATTTC
GAAAGACCGTGGTCTGCGAGTTCGTGAGATCGGGCTACCCAGAGCAAATT
TTCGCGACAAGTTTCCCCGATTGCCCCCTCCCAGCCTGTACAAGCGATTT
CGAAAGATGAAAACGACCTCTGGGCACTGCGGCCCGGTGTATTGTGTGGC
GTTTGATCAAACGGGAACCCGGATTGTCACGATGAAAACGACCTCTGGGC
ACTGCGGCCCGGTGTATTGTGTGGCGTTTGATCAAACGGGAACCCGGATT
GTCACG
back to top