|
|
Homology
BLAST of mRNA_H-fluviatilis_contig10394.814.1 vs. uniprot
Match: A0A073CHP3_PLAAG (Putative WD40 repeat-containing protein n=3 Tax=Planktothrix agardhii TaxID=1160 RepID=A0A073CHP3_PLAAG) HSP 1 Score: 48.1 bits (113), Expect = 5.800e-5 Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 3
Query: 6 SPDNNMIASASNDDTVRVWDFQSRPLAVLIHRHDVMRVAFSPSAAWFNGL 155
SPD MIASAS+D TV++WD + + + ++H V V FSP+ + L
Sbjct: 48 SPDQKMIASASDDKTVKIWDLEGKKINTIVHPSAVWTVVFSPNNQFMKNL 97
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 302 |
| Cds size | 282 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929102.2476702-CDS-H-fluviatilis_contig10394:2634..2681 | 1622929102.2476702-CDS-H-fluviatilis_contig10394:2634..2681 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10394 2635..2681 - |
| 1691135182.407691-CDS-H-fluviatilis_contig10394:2634..2681 | 1691135182.407691-CDS-H-fluviatilis_contig10394:2634..2681 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10394 2635..2681 - |
| 1622929102.2608705-CDS-H-fluviatilis_contig10394:2710..2808 | 1622929102.2608705-CDS-H-fluviatilis_contig10394:2710..2808 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10394 2711..2808 - |
| 1691135182.4168358-CDS-H-fluviatilis_contig10394:2710..2808 | 1691135182.4168358-CDS-H-fluviatilis_contig10394:2710..2808 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10394 2711..2808 - |
| 1622929102.2776387-CDS-H-fluviatilis_contig10394:2837..2918 | 1622929102.2776387-CDS-H-fluviatilis_contig10394:2837..2918 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10394 2838..2918 - |
| 1691135182.4266264-CDS-H-fluviatilis_contig10394:2837..2918 | 1691135182.4266264-CDS-H-fluviatilis_contig10394:2837..2918 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10394 2838..2918 - |
| 1622929102.2925317-CDS-H-fluviatilis_contig10394:2951..3007 | 1622929102.2925317-CDS-H-fluviatilis_contig10394:2951..3007 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10394 2952..3007 - |
| 1691135182.4350915-CDS-H-fluviatilis_contig10394:2951..3007 | 1691135182.4350915-CDS-H-fluviatilis_contig10394:2951..3007 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10394 2952..3007 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929102.3092444-UTR-H-fluviatilis_contig10394:3007..3027 | 1622929102.3092444-UTR-H-fluviatilis_contig10394:3007..3027 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10394 3008..3027 - |
| 1691135182.4499846-UTR-H-fluviatilis_contig10394:3007..3027 | 1691135182.4499846-UTR-H-fluviatilis_contig10394:3007..3027 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10394 3008..3027 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig10394.814.1 >prot_H-fluviatilis_contig10394.814.1 ID=prot_H-fluviatilis_contig10394.814.1|Name=mRNA_H-fluviatilis_contig10394.814.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=94bp
MIASASNDDTVRVWDFQSRPLAVLIHRHDVMRVAFSPSAAWFNGLRLLAT
CSMDGYLRLFDCDNLDQAPVMISAYGITVPPAWSAHHERRPSVS back to topmRNA from alignment at H-fluviatilis_contig10394:2635..3027- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-fluviatilis_contig10394.814.1 ID=mRNA_H-fluviatilis_contig10394.814.1|Name=mRNA_H-fluviatilis_contig10394.814.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=393bp|location=Sequence derived from alignment at H-fluviatilis_contig10394:2635..3027- (Heribaudiella fluviatilis SAG_13_90)
GTGTTTCACCCGACAACAATATGATCGCCTCAGCTTCCAACGACGATACT
GTTCGTGTCTGGGATTTCCAGTCTCGGTTTGCTCTCTCTCTCTCGCGCAA
TGTTGGTAGCCCTCTTGCAGTCCTCATTCATCGGCACGACGTGATGCGAG
TAGCATTCTCCCCGTCCGCTGCTTGGTTCAATGGACTTCGGTTGTTTATG
CGCGTCATGATGGTTTTAGTTTGTTGGCGACGTGTTCTATGGATGGATAT
CTGCGTTTGTTTGACTGCGACAATTTAGACCAGGCGCCTGTGATGATTTC
AGCATATGGGATAACCGGTGTGGGTGTTGACTTCTACTCATTTTAGTGCC
CCCTGCGTGGAGTGCTCACCACGAACGACGTCCATCAGTATCG back to topCoding sequence (CDS) from alignment at H-fluviatilis_contig10394:2635..3027- >mRNA_H-fluviatilis_contig10394.814.1 ID=mRNA_H-fluviatilis_contig10394.814.1|Name=mRNA_H-fluviatilis_contig10394.814.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=564bp|location=Sequence derived from alignment at H-fluviatilis_contig10394:2635..3027- (Heribaudiella fluviatilis SAG_13_90)
ATGATCGCCTCAGCTTCCAACGACGATACTGTTCGTGTCTGGGATTTCCA
GTCTCGATGATCGCCTCAGCTTCCAACGACGATACTGTTCGTGTCTGGGA
TTTCCAGTCTCGCCCTCTTGCAGTCCTCATTCATCGGCACGACGTGATGC
GAGTAGCATTCTCCCCGTCCGCTGCTTGGTTCAATGGACTTCGCCCTCTT
GCAGTCCTCATTCATCGGCACGACGTGATGCGAGTAGCATTCTCCCCGTC
CGCTGCTTGGTTCAATGGACTTCGTTTGTTGGCGACGTGTTCTATGGATG
GATATCTGCGTTTGTTTGACTGCGACAATTTAGACCAGGCGCCTGTGATG
ATTTCAGCATATGGGATAACCGTTTGTTGGCGACGTGTTCTATGGATGGA
TATCTGCGTTTGTTTGACTGCGACAATTTAGACCAGGCGCCTGTGATGAT
TTCAGCATATGGGATAACCGTGCCCCCTGCGTGGAGTGCTCACCACGAAC
GACGTCCATCAGTATCGTGCCCCCTGCGTGGAGTGCTCACCACGAACGAC
GTCCATCAGTATCG back to top
|