mRNA_H-fluviatilis_contig10394.812.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10394.812.1
Unique NamemRNA_H-fluviatilis_contig10394.812.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig10394.812.1 vs. uniprot
Match: UPI001C7213AD (bromodomain and WD repeat-containing protein 3 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C7213AD)

HSP 1 Score: 123 bits (309), Expect = 2.770e-28
Identity = 69/185 (37.30%), Postives = 100/185 (54.05%), Query Frame = 1
Query:    7 VRIVSAKWTADGERVVTAASDFGVRVWKINFSATGPTSELCFALHRHTDSVPVVCPHPFDGRLAFSVSNDGRVILWDVIQGAVVRCIEHFSLSYVEGNWA-------SNGLSFAATSDSGALEVFSLGSRAWYYPTPTWQFYVADYKPLQYDMNFNAIDQETQQPPHAMKL-VLTGFNGKPYAQQ 537
            +R+    WT D  RV+TA SDF +++W  N      +  L F L  H D V V+ PHP D R+  S  +DGR+ILWD++ G V++   HF+L   +G+ A        +GL FA+T   G L +F  GS   Y   P  QF+  DY+PL  D++ + +D++TQ  PH +    L   +G PY  Q
Sbjct:  431 LRVTMVGWTLDDSRVITAVSDFTIKIWDSN------SGNLRFILKGHEDEVFVLEPHPIDPRIFLSSGHDGRIILWDLVTGTVIK--NHFNLIEGQGHGAVFDCKFSPDGLMFASTDSHGHLSIFGFGSADRYKKVPEEQFFHTDYRPLIRDIHHHVLDEQTQTAPHLLPPPFLVDIDGNPYPPQ 607          
BLAST of mRNA_H-fluviatilis_contig10394.812.1 vs. uniprot
Match: L8GQR8_ACACA (Bromodomain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQR8_ACACA)

HSP 1 Score: 121 bits (303), Expect = 1.650e-27
Identity = 67/180 (37.22%), Postives = 94/180 (52.22%), Query Frame = 1
Query:    4 PVRIVSAKWTADGERVVTAASDFGVRVWKINFSATGPTSELCFALHRHTDSVPVVCPHPFDGRLAFSVSNDGRVILWDVIQGAVVRCIEHFSLSYVEGNWASNGLSFAATSDSGALEVFSLGSRAWYYPTPTWQFYVADYKPLQYDMNFNAIDQETQQPPHAM-KLVLTGFNGKPYAQQP 540
            P+ +  A W+ D + V+TA SDF ++VW         T  L   L  HT+SV V+  HP D R+  S   DGRV  WD+ +G  V+  ++      +G++A NG  FAA+   G   ++  G    Y   P  QF+  DY PL  D+N   +D+ TQ PPH M K +L   +G PY QQP
Sbjct:  247 PIIVTMALWSLDDQYVITALSDFTIKVWDAK------TGALVHTLRGHTNSVYVLDSHPVDPRIIVSAGYDGRVTFWDINKGEAVQSHKNADRQLFDGHFARNGAYFAASDHEGFYTLYGTGPTQKYQSVPVEQFFETDYHPLLRDLNHWVLDEATQLPPHRMPKPLLCTIDGVPYKQQP 420          
BLAST of mRNA_H-fluviatilis_contig10394.812.1 vs. uniprot
Match: A0A087TWC1_STEMI (Bromodomain and WD repeat-containing protein 3 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087TWC1_STEMI)

HSP 1 Score: 117 bits (294), Expect = 2.300e-26
Identity = 68/182 (37.36%), Postives = 99/182 (54.40%), Query Frame = 1
Query:    7 VRIVSAKWTADGERVVTAASDFGVRVWKINFSATGPTSELCFALHRHTDSVPVVCPHPFDGRLAFSVSNDGRVILWDVIQGAVVRCIEHFSLSYVEGNWA-------SNGLSFAATSDSGALEVFSLGSRAWYYPTPTWQFYVADYKPLQYDMNFNAIDQETQQPPHAMKL-VLTGFNGKPY 528
            +R+    WT D  +VVTA SD  ++VW    S TG    LC  L  H D V V+  HP D R+  S  +DGR+I+WD+I G +++   HF+L   +G+ A        +GL FA+T   G L +F  GS   Y   P  QF+  DY+PL  D++++ +D++TQ  PH +    L   +G PY
Sbjct:  430 LRVTMVGWTLDDSKVVTAVSDSSIKVWN---SYTG---SLCNILKGHEDEVFVLEAHPTDPRVFLSSGHDGRIIIWDLITGTIIK--NHFNLIEGQGHGAVFDCKFSPDGLMFASTDSHGHLSIFGFGSNDRYKKVPEEQFFHTDYRPLIRDIHYHVLDEQTQMAPHLLPPPFLVDIDGNPY 603          
BLAST of mRNA_H-fluviatilis_contig10394.812.1 vs. uniprot
Match: A0A4Y2H861_ARAVE (Bromodomain and WD repeat-containing protein 3 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2H861_ARAVE)

HSP 1 Score: 116 bits (291), Expect = 6.860e-26
Identity = 77/239 (32.22%), Postives = 118/239 (49.37%), Query Frame = 1
Query:   13 IVSAKWTADGERVVTAASDFGVRVWKINFSATGPTSELCFALHRHTDSVPVVCPHPFDGRLAFSVSNDGRVILWDVIQGAVVRCIEHFSLSYVEGNWA-------SNGLSFAATSDSGALEVFSLGSRAWYYPTPTWQFYVADYKPLQYDMNFNAIDQETQQPPHAMKL-VLTGFNGKPYAQQ-----PGQD------ATPRTATRSAASSD---PSIIRTFLEPLPMIADVTDNLKSE 663
            +    W  D ++V+TA SD  ++VW    S TG    L F L  H D V V+ P+P D R+  S  +DGR+ILWD++ G +++   HF+L   +G+ A        +GL FA+T   G L +F  GS   Y   P  QF+  DY+P+ +D+N + +D++TQ  PH +    L   +G PY        PG++        P  A  +   S+   P  +   L   P I D+ + L+ E
Sbjct:  427 VTMVSWALDDDKVITAVSDHSIKVWN---SYTG---SLIFCLKGHEDEVFVLEPNPTDSRVFLSSGHDGRIILWDLVSGTIIK--NHFNLIEGQGHGAVFDCKFSPDGLMFASTDSHGHLSMFGFGSADRYKKVPEEQFFHTDYRPVIHDVNHHVLDEQTQTAPHLLPPPFLVDIDGNPYPPNLQRLVPGREHHNDSQLVPYVAVSAEGDSEILQPVRLTNELTDRPTIDDMIERLQQE 657          
BLAST of mRNA_H-fluviatilis_contig10394.812.1 vs. uniprot
Match: UPI0015AD63F5 (PH-interacting protein-like isoform X2 n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015AD63F5)

HSP 1 Score: 116 bits (290), Expect = 9.260e-26
Identity = 67/182 (36.81%), Postives = 98/182 (53.85%), Query Frame = 1
Query:    7 VRIVSAKWTADGERVVTAASDFGVRVWKINFSATGPTSELCFALHRHTDSVPVVCPHPFDGRLAFSVSNDGRVILWDVIQGAVVRCIEHFSLSYVEGNWA-------SNGLSFAATSDSGALEVFSLGSRAWYYPTPTWQFYVADYKPLQYDMNFNAIDQETQQPPHAMKL-VLTGFNGKPY 528
            +R+    WT D  +VVTA SD  ++VW    S+TG    LC  L  H D V V+  HP D R+  S  +DGR+I+WD+I G +++   HF+L   +G+ A        +G  FA+T   G L +F  GS   Y   P  QF+  DY+PL  D++ + +D++TQ  PH +    L   +G PY
Sbjct:  430 LRVTMVGWTLDDSKVVTAVSDSSIKVWN---SSTG---SLCNVLKGHEDEVFVLEAHPTDPRVFLSSGHDGRIIIWDLITGTIIK--NHFNLIEGQGHGAVFDCKFSPDGFMFASTDSHGHLSIFGFGSNDRYKKVPEEQFFHTDYRPLIRDIHHHVLDEQTQMAPHLLPPPFLVDIDGNPY 603          
BLAST of mRNA_H-fluviatilis_contig10394.812.1 vs. uniprot
Match: UPI0015A80FEA (PH-interacting protein-like isoform X1 n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A80FEA)

HSP 1 Score: 116 bits (290), Expect = 9.270e-26
Identity = 67/182 (36.81%), Postives = 98/182 (53.85%), Query Frame = 1
Query:    7 VRIVSAKWTADGERVVTAASDFGVRVWKINFSATGPTSELCFALHRHTDSVPVVCPHPFDGRLAFSVSNDGRVILWDVIQGAVVRCIEHFSLSYVEGNWA-------SNGLSFAATSDSGALEVFSLGSRAWYYPTPTWQFYVADYKPLQYDMNFNAIDQETQQPPHAMKL-VLTGFNGKPY 528
            +R+    WT D  +VVTA SD  ++VW    S+TG    LC  L  H D V V+  HP D R+  S  +DGR+I+WD+I G +++   HF+L   +G+ A        +G  FA+T   G L +F  GS   Y   P  QF+  DY+PL  D++ + +D++TQ  PH +    L   +G PY
Sbjct:  430 LRVTMVGWTLDDSKVVTAVSDSSIKVWN---SSTG---SLCNVLKGHEDEVFVLEAHPTDPRVFLSSGHDGRIIIWDLITGTIIK--NHFNLIEGQGHGAVFDCKFSPDGFMFASTDSHGHLSIFGFGSNDRYKKVPEEQFFHTDYRPLIRDIHHHVLDEQTQMAPHLLPPPFLVDIDGNPY 603          
BLAST of mRNA_H-fluviatilis_contig10394.812.1 vs. uniprot
Match: UPI001EE61CA4 (bromodomain and WD repeat-containing protein 3-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE61CA4)

HSP 1 Score: 107 bits (267), Expect = 9.060e-23
Identity = 63/181 (34.81%), Postives = 91/181 (50.28%), Query Frame = 1
Query:   10 RIVSAKWTADGERVVTAASDFGVRVWKINFSATGPTSELCFALHRHTDSVPVVCPHPFDGRLAFSVSNDGRVILWDVIQGAVVRCIEHFSLSYVEGN-------WASNGLSFAATSDSGALEVFSLGSRAWYYPTPTWQFYVADYKPLQYDMNFNAIDQETQQPPHAMKL-VLTGFNGKPY 528
            R+    W  D E VVTA SD+ ++VW  +      T  L   L  H D V V+ P P D R+  S  +DG +++W++  G  ++    F++   +G+       +A +GLSFAA    G L +F  GS   Y   P   F+  DY+PL  D N   +D++TQQPPH M    L   +G PY
Sbjct:  435 RVTMVAWMMDDEHVVTAVSDYSLKVWASH------TGRLVHVLESHQDEVFVLEPSPIDARILLSAGHDGNIVIWNLQTGNKIKTF--FNMIEGQGHGAVFDCKFAPDGLSFAAVDSHGHLLMFGFGSNEKYQKVPKEVFFHTDYRPLIRDANNYVLDEQTQQPPHLMPPPFLVDIDGNPY 607          
BLAST of mRNA_H-fluviatilis_contig10394.812.1 vs. uniprot
Match: UPI0006B0796C (bromodomain and WD repeat-containing protein 3-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0796C)

HSP 1 Score: 106 bits (264), Expect = 2.580e-22
Identity = 62/184 (33.70%), Postives = 95/184 (51.63%), Query Frame = 1
Query:    7 VRIVSAKWTADGERVVTAASDFGVRVWKINFSATGPTSELCFALHRHTDSVPVVCPHPFDGRLAFSVSNDGRVILWDVIQGAVVRCIEHFSLSYVEGN---------WASNGLSFAATSDSGALEVFSLGSRAWYYPTPTWQFYVADYKPLQYDMNFNAIDQETQQPPHAMKL-VLTGFNGKPY 528
            +++    W+ D   V+TA +D  ++VW    S TG    +   L+ H D V V+  HP D R+  S  +DGR++LWD+I G V++       + +EG          ++ +GL FA+T   G + +F LGS   Y   P  QF+  DY+PL  D N + +D++TQ  PH M    L   +G PY
Sbjct:  431 LKVTMVGWSLDDSLVITAVNDHSLKVWD---SYTGTLKHI---LNCHEDEVFVLETHPTDTRILLSAGHDGRIVLWDIISGVVIKSF----FNTIEGQGHGAVFDCKFSFDGLMFASTDSHGHISIFGLGSNERYKKVPEEQFFHTDYRPLIRDSNQHVLDEQTQCAPHLMPPPFLVDIDGNPY 604          
BLAST of mRNA_H-fluviatilis_contig10394.812.1 vs. uniprot
Match: A0A2R5LKJ9_9ACAR (Putative wd40 domain protein (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LKJ9_9ACAR)

HSP 1 Score: 105 bits (263), Expect = 3.470e-22
Identity = 59/184 (32.07%), Postives = 96/184 (52.17%), Query Frame = 1
Query:    1 EPVRIVSAKWTADGERVVTAASDFGVRVWKINFSATGPTSELCFALHRHTDSVPVVCPHPFDGRLAFSVSNDGRVILWDVIQGAVVRCIEHFSLSYVEGNWA-------SNGLSFAATSDSGALEVFSLGSRAWYYPTPTWQFYVADYKPLQYDMNFNAIDQETQQPPHAMKL-VLTGFNGKPY 528
            + +++    W+ D + V+TA +D+ ++ W  N      T +L   L  H D V V+  HP D R+  S  +DGR++LWD++ G ++R    F++   +G+ A        +GL FA+T   G + +F  GS   Y   P  QF+  DY+P+  D N + +D++TQ  PH M    L   +G PY
Sbjct:  390 QKLKVTMVGWSLDDKMVITAITDYSIKAWDSN------TGKLIQTLTGHEDEVFVLESHPVDSRILLSGGHDGRIVLWDLMTGTMIRSF--FNMIEGQGHGAVFDCKFSPDGLLFASTDSHGHISIFGFGSSDPYKKVPDEQFFHTDYRPVIRDANQHVLDEQTQSAPHLMPPPFLVDIDGNPY 565          
BLAST of mRNA_H-fluviatilis_contig10394.812.1 vs. uniprot
Match: UPI001884B1E2 (PH-interacting protein-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884B1E2)

HSP 1 Score: 105 bits (262), Expect = 4.680e-22
Identity = 67/195 (34.36%), Postives = 96/195 (49.23%), Query Frame = 1
Query:    4 PVRIVSAKWTADGERVVTAASDFGVRVWKINFSATGPTSELCFALHRHTDSVPVVCPHPFDGRLAFSVSNDGRVILWDVIQGAVVRCIEHFSLSYVEGN-------WASNGLSFAATSDSGALEVFSLGSRAWYYPTPTWQFYVADYKPLQYDMNFNAIDQETQQPPHAMK---LVLTGFNGKPYAQQ---PGQD 549
            P+R+   +WT D  RV+T  SD   RVW+ +      T  L   L  HTD V VV  HP + RL  S  +DG++++WDV++G V+     F+    EG+       W+  GL  AAT   G L  F +     +   P  QF+  DY+PL  D     +D++TQ  PH +    LV    N +P A Q   PG++
Sbjct:  435 PLRVTMVRWTTDDSRVITTVSDTSFRVWEAD------TGRLLHVLAGHTDEVYVVESHPTEPRLVLSAGHDGKLLVWDVLEGTVLASF--FNAIEGEGHGGLFDARWSPCGLFIAATDSHGHLSHFGVSGSDKFRKVPYEQFFHTDYRPLMRDARHQVLDEQTQMAPHLLPPPLLVDRDGNPQPAACQRLVPGRE 621          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10394.812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C7213AD2.770e-2837.30bromodomain and WD repeat-containing protein 3 n=1... [more]
L8GQR8_ACACA1.650e-2737.22Bromodomain containing protein n=1 Tax=Acanthamoeb... [more]
A0A087TWC1_STEMI2.300e-2637.36Bromodomain and WD repeat-containing protein 3 (Fr... [more]
A0A4Y2H861_ARAVE6.860e-2632.22Bromodomain and WD repeat-containing protein 3 n=1... [more]
UPI0015AD63F59.260e-2636.81PH-interacting protein-like isoform X2 n=1 Tax=Ste... [more]
UPI0015A80FEA9.270e-2636.81PH-interacting protein-like isoform X1 n=1 Tax=Ste... [more]
UPI001EE61CA49.060e-2334.81bromodomain and WD repeat-containing protein 3-lik... [more]
UPI0006B0796C2.580e-2233.70bromodomain and WD repeat-containing protein 3-lik... [more]
A0A2R5LKJ9_9ACAR3.470e-2232.07Putative wd40 domain protein (Fragment) n=1 Tax=Or... [more]
UPI001884B1E24.680e-2234.36PH-interacting protein-like n=1 Tax=Pollicipes pol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10394contigH-fluviatilis_contig10394:875..1811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score106.7
Seed ortholog evalue1.6e-20
Seed eggNOG ortholog10224.XP_006815970.1
Preferred nameBRWD3
KEGG koko:K11797,ko:K11798
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005102,GO:0005158,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.regulation of cell shape
EggNOG OGs38CE8@33154,3BB2M@33208,3CYU5@33213,COG2319@1,KOG0644@2759
COG Functional cat.O
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons7
Model size765
Cds size765
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.4785233-CDS-H-fluviatilis_contig10394:874..11321622929102.4785233-CDS-H-fluviatilis_contig10394:874..1132Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 875..1132 -
1691135182.5242972-CDS-H-fluviatilis_contig10394:874..11321691135182.5242972-CDS-H-fluviatilis_contig10394:874..1132Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 875..1132 -
1622929102.509098-CDS-H-fluviatilis_contig10394:1160..12291622929102.509098-CDS-H-fluviatilis_contig10394:1160..1229Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 1161..1229 -
1691135182.5377622-CDS-H-fluviatilis_contig10394:1160..12291691135182.5377622-CDS-H-fluviatilis_contig10394:1160..1229Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 1161..1229 -
1622929102.5266185-CDS-H-fluviatilis_contig10394:1257..13601622929102.5266185-CDS-H-fluviatilis_contig10394:1257..1360Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 1258..1360 -
1691135182.5472083-CDS-H-fluviatilis_contig10394:1257..13601691135182.5472083-CDS-H-fluviatilis_contig10394:1257..1360Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 1258..1360 -
1622929102.538278-CDS-H-fluviatilis_contig10394:1391..14411622929102.538278-CDS-H-fluviatilis_contig10394:1391..1441Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 1392..1441 -
1691135182.556309-CDS-H-fluviatilis_contig10394:1391..14411691135182.556309-CDS-H-fluviatilis_contig10394:1391..1441Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 1392..1441 -
1622929102.5524857-CDS-H-fluviatilis_contig10394:1467..15491622929102.5524857-CDS-H-fluviatilis_contig10394:1467..1549Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 1468..1549 -
1691135182.5650153-CDS-H-fluviatilis_contig10394:1467..15491691135182.5650153-CDS-H-fluviatilis_contig10394:1467..1549Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 1468..1549 -
1622929102.5667238-CDS-H-fluviatilis_contig10394:1582..16821622929102.5667238-CDS-H-fluviatilis_contig10394:1582..1682Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 1583..1682 -
1691135182.5805836-CDS-H-fluviatilis_contig10394:1582..16821691135182.5805836-CDS-H-fluviatilis_contig10394:1582..1682Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 1583..1682 -
1622929102.5781848-CDS-H-fluviatilis_contig10394:1708..18111622929102.5781848-CDS-H-fluviatilis_contig10394:1708..1811Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 1709..1811 -
1691135182.5977783-CDS-H-fluviatilis_contig10394:1708..18111691135182.5977783-CDS-H-fluviatilis_contig10394:1708..1811Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10394 1709..1811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10394.812.1prot_H-fluviatilis_contig10394.812.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10394 875..1811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10394.812.1

>prot_H-fluviatilis_contig10394.812.1 ID=prot_H-fluviatilis_contig10394.812.1|Name=mRNA_H-fluviatilis_contig10394.812.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=255bp
EPVRIVSAKWTADGERVVTAASDFGVRVWKINFSATGPTSELCFALHRHT
DSVPVVCPHPFDGRLAFSVSNDGRVILWDVIQGAVVRCIEHFSLSYVEGN
WASNGLSFAATSDSGALEVFSLGSRAWYYPTPTWQFYVADYKPLQYDMNF
NAIDQETQQPPHAMKLVLTGFNGKPYAQQPGQDATPRTATRSAASSDPSI
IRTFLEPLPMIADVTDNLKSEVFTTGSEQRLWWQKLDDQDSLKRRRGMNS
NWGLA
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mRNA from alignment at H-fluviatilis_contig10394:875..1811-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10394.812.1 ID=mRNA_H-fluviatilis_contig10394.812.1|Name=mRNA_H-fluviatilis_contig10394.812.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=937bp|location=Sequence derived from alignment at H-fluviatilis_contig10394:875..1811- (Heribaudiella fluviatilis SAG_13_90)
GAGCCTGTTCGAATCGTTTCAGCAAAGTGGACGGCCGATGGGGAACGGGT GGTTACTGCCGCGTCGGATTTTGGGGTCCGTGTGTGGAAGATCAACTTTT CTGGTATGGTTTGGCATCTCACTGCGCAGCCACCGGTCCGACGAGCGAGC TCTGTTTTGCTTTACACCGTCACACGGATTCGGTGCCCGTCGTGTGCCCG CATCCGTTCGATGGCCGCCTTGCCTTCAGGTGTTCAATGGCTCCGTGTCA TCTGCGTTTTAGTGTGAGCAACGATGGACGTGTCATTCTGTGGGATGTGA TCCAAGGTGCGGTGGTACGCTGTATTGAGCACTTCTCCCTTTCGGTCCAG GCAGTTTGCTTACCGTGTAGTACGTTGAGGGTAACTGGGCTTCAAACGGT CTTTCTTTCGCCGCGACGAGGTCTGGTTGGGTTGCAGCGCATTTTCCGCA GTGACAGCGGCGCGCTGGAAGTGTTCTCGCTGGGGAGTCGGGCGTGGTAC TATCCTACTCCAACATGGCAATTCTACGTTGCAGACTACAAGCCGTTACA ATACGTGAGATTTTGGACGGCTGAGCTCGCAGGACATGAATTTCAATGCC ATCGATCAAGAGACGCAGCAGCCGCCGCACGCAATGAAACTGGTTTTAAC GGTGATTTCCATGTGGTTGACTCCTCAAGGGTTTCAACGGCAAGCCCTAT GCTCAGCAACCTGGCCAGGACGCAACCCCCCGCACTGCCACCAGGAGTGC TGCGTCATCGGACCCATCGATCATCCGCACGTTCCTGGAGCCACTGCCGA TGATTGCGGACGTCACGGACAACCTCAAATCGGAAGTATTCACCACCGGC TCTGAACAGCGATTGTGGTGGCAGAAACTAGATGACCAAGATTCCCTCAA GCGGCGCCGGGGAATGAACTCCAATTGGGGCCTTGCG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10394:875..1811-

>mRNA_H-fluviatilis_contig10394.812.1 ID=mRNA_H-fluviatilis_contig10394.812.1|Name=mRNA_H-fluviatilis_contig10394.812.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1530bp|location=Sequence derived from alignment at H-fluviatilis_contig10394:875..1811- (Heribaudiella fluviatilis SAG_13_90)
GAGCCTGTTCGAATCGTTTCAGCAAAGTGGACGGCCGATGGGGAACGGGT
GGTTACTGCCGCGTCGGATTTTGGGGTCCGTGTGTGGAAGATCAACTTTT
CTGGAGCCTGTTCGAATCGTTTCAGCAAAGTGGACGGCCGATGGGGAACG
GGTGGTTACTGCCGCGTCGGATTTTGGGGTCCGTGTGTGGAAGATCAACT
TTTCTGCCACCGGTCCGACGAGCGAGCTCTGTTTTGCTTTACACCGTCAC
ACGGATTCGGTGCCCGTCGTGTGCCCGCATCCGTTCGATGGCCGCCTTGC
CTTCAGCCACCGGTCCGACGAGCGAGCTCTGTTTTGCTTTACACCGTCAC
ACGGATTCGGTGCCCGTCGTGTGCCCGCATCCGTTCGATGGCCGCCTTGC
CTTCAGTGTGAGCAACGATGGACGTGTCATTCTGTGGGATGTGATCCAAG
GTGCGGTGGTACGCTGTATTGAGCACTTCTCCCTTTCGTGTGAGCAACGA
TGGACGTGTCATTCTGTGGGATGTGATCCAAGGTGCGGTGGTACGCTGTA
TTGAGCACTTCTCCCTTTCGTACGTTGAGGGTAACTGGGCTTCAAACGGT
CTTTCTTTCGCCGCGACGAGTACGTTGAGGGTAACTGGGCTTCAAACGGT
CTTTCTTTCGCCGCGACGAGTGACAGCGGCGCGCTGGAAGTGTTCTCGCT
GGGGAGTCGGGCGTGGTACTATCCTACTCCAACATGGCAATTCTACGTTG
CAGACTACAAGCCGTTACAATACTGACAGCGGCGCGCTGGAAGTGTTCTC
GCTGGGGAGTCGGGCGTGGTACTATCCTACTCCAACATGGCAATTCTACG
TTGCAGACTACAAGCCGTTACAATACGACATGAATTTCAATGCCATCGAT
CAAGAGACGCAGCAGCCGCCGCACGCAATGAAACTGGTTTTAACGGACAT
GAATTTCAATGCCATCGATCAAGAGACGCAGCAGCCGCCGCACGCAATGA
AACTGGTTTTAACGGGTTTCAACGGCAAGCCCTATGCTCAGCAACCTGGC
CAGGACGCAACCCCCCGCACTGCCACCAGGAGTGCTGCGTCATCGGACCC
ATCGATCATCCGCACGTTCCTGGAGCCACTGCCGATGATTGCGGACGTCA
CGGACAACCTCAAATCGGAAGTATTCACCACCGGCTCTGAACAGCGATTG
TGGTGGCAGAAACTAGATGACCAAGATTCCCTCAAGCGGCGCCGGGGAAT
GAACTCCAATTGGGGCCTTGCGGGTTTCAACGGCAAGCCCTATGCTCAGC
AACCTGGCCAGGACGCAACCCCCCGCACTGCCACCAGGAGTGCTGCGTCA
TCGGACCCATCGATCATCCGCACGTTCCTGGAGCCACTGCCGATGATTGC
GGACGTCACGGACAACCTCAAATCGGAAGTATTCACCACCGGCTCTGAAC
AGCGATTGTGGTGGCAGAAACTAGATGACCAAGATTCCCTCAAGCGGCGC
CGGGGAATGAACTCCAATTGGGGCCTTGCG
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