mRNA_H-fluviatilis_contig10392.807.1 (mRNA) Heribaudiella fluviatilis SAG_13_90
|
Overview
Homology
BLAST of mRNA_H-fluviatilis_contig10392.807.1 vs. uniprot
Match: D7G6E2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E2_ECTSI) HSP 1 Score: 365 bits (936), Expect = 1.200e-117 Identity = 223/352 (63.35%), Postives = 256/352 (72.73%), Query Frame = 3
Query: 192 LLYDDQRFSAAEEVLTRGGDSAAGKALPTTKAGLLLLSKAQLFEGKVSEAVQTCSRAVELCEQDEDHTPDTDALGQALRQLGATQMLLQGAADDAETSLLRAARLGSSGTDQGKGLSVLAAFNVSAGGEQRIEEAVGLWNEAFATTKAAVKELETTADPSNAAVSE----SDDVAHATTSAAIRLSRASILCSAAQGELILGRGTTKTSEYLAEALKMREELLATGHPATAWTLALLGRCHLVAGEAVTAEGLLRAALDGLGTIGEEAS-GTSATNLVGGVTASPLDLFPSPLHPFSKAECLRAYSELLMQWEKREAEGERVLRRAEKVESSLRLKPPGGVTVHMLHLDDVY 1232
+LYDDQRF AAE +L R G+S A K PT LLLLSKAQLF+GK+ AV+T SRAV+LC+QDED+TPDTDALGQALRQLG Q+L G DDAETSLLRAARLGS+ DQGKGL+ +AAFN++ G EQ +EEAV L NEA ATT + + E TA +D A A TS RL+ AS+L +AAQGEL+L RGT SE L EALK+RE+LL GHPATAWTL+LL RCH+ AGEAVTAEGL RAALD L I EE G + G A PL LF SPLHP +KA LR YSELL+QWEKREAEGE V R+AEKVESSL LKPP G+T+HMLHLDDVY
Sbjct: 82 VLYDDQRFGAAEAIL-RKGESNARKQFPTE---LLLLSKAQLFQGKIPVAVETSSRAVDLCQQDEDNTPDTDALGQALRQLGVIQVL-SGEEDDAETSLLRAARLGSTSADQGKGLAAVAAFNIARGDEQSVEEAVELLNEACATTSESDEHKEPTAXXXXXXXXXGGXXNDAAASAATSKVARLAHASVLSTAAQGELVLERGTATASERLGEALKIREQLLPIGHPATAWTLSLLARCHVAAGEAVTAEGLFRAALDSLQGIAEEVDDGIARRQRSAGTVALPL-LFASPLHPHTKAATLRGYSELLLQWEKREAEGEVVARQAEKVESSLLLKPPVGLTLHMLHLDDVY 427
BLAST of mRNA_H-fluviatilis_contig10392.807.1 vs. uniprot
Match: A0A835ZDH7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH7_9STRA) HSP 1 Score: 150 bits (378), Expect = 1.310e-36 Identity = 140/376 (37.23%), Postives = 189/376 (50.27%), Query Frame = 3
Query: 174 ITQA--RRL---LYDDQRFSAAEEVLTRGGDSAAGKALPTTKAG-LLLLSKAQLFEGKVSEAVQTCSRAVELCEQD-EDHTPDTDALGQALRQLGATQMLLQGAADDAETSLLRAARLGSSGTDQGKG-----------------LSVLAAFNVSAGGEQRIEEAVGLWNEAFATTKAAVKELETTADPSNAAVSESDDVAHATTSAAIRLSRASILCSAAQGELILGRG---TTKTSEYLAEALKMREELLATGHPATAWTLALLGRCHLVAGEAVTAEGLLRAALDGLGTIGEEASGTSATNLVGGVTASPLDLFPSPLHPFSKAECLRAYSELLMQWEKREAEGERVLRRAEKVESSLRLKPPGGVTVHMLHL 1220
+TQA RRL LY R + AE + + G A G +LL+++AQLF+GK++ A TC+ AV CE TPDT ALG ALR LG Q LL+G D AETSLLRAARL DQ K LS LAA+++S + +A+ W EA + AA + +A A HA T L+ A++ + E G T + S +L EALK+ E+ + P W LA L RC +AG AVTAEGL R+A++ + E+ G A L + PSP + F L YS+LL+QWEKREA G ++ +RA+ +E+ L LK P V++ MLHL
Sbjct: 7 LTQAANRRLGLTLYRAGRLAEAEAAVRAAVGAGDGAAQLAEYVGAVLLVARAQLFQGKLAAAAATCADAVRACEDGVSGATPDTAALGNALRSLGVVQ-LLRGDGDAAETSLLRAARLSDGAADQAKARIARQGPAVARVLVVCALSSLAAYSMSIETAEGHRDALEYWQEAVSVLTAADAQAAASAC---AKTKRELQETHAIT--LTNLAEAALTGAPGPYETAGAGGKADTERPSAHLREALKLSEQSMGHNDPYLGWVLAQLARCCHLAGSAVTAEGLFRSAMEKMDP--EDVRGKQA-----------LAMHPSPANIFLLQGTLSMYSQLLLQWEKREAVGRKMQQRAQDLEAGLPLKLPPRVSLPMLHL 363 The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10392.807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig10392.807.1 >prot_H-fluviatilis_contig10392.807.1 ID=prot_H-fluviatilis_contig10392.807.1|Name=mRNA_H-fluviatilis_contig10392.807.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=369bp MCEVYGRRERSRSGRITQARRLLYDDQRFSAAEEVLTRGGDSAAGKALPTback to top mRNA from alignment at H-fluviatilis_contig10392:2346..5948+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-fluviatilis_contig10392.807.1 ID=mRNA_H-fluviatilis_contig10392.807.1|Name=mRNA_H-fluviatilis_contig10392.807.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=3603bp|location=Sequence derived from alignment at H-fluviatilis_contig10392:2346..5948+ (Heribaudiella fluviatilis SAG_13_90)back to top Coding sequence (CDS) from alignment at H-fluviatilis_contig10392:2346..5948+ >mRNA_H-fluviatilis_contig10392.807.1 ID=mRNA_H-fluviatilis_contig10392.807.1|Name=mRNA_H-fluviatilis_contig10392.807.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=2214bp|location=Sequence derived from alignment at H-fluviatilis_contig10392:2346..5948+ (Heribaudiella fluviatilis SAG_13_90)back to top |