mRNA_H-fluviatilis_contig10365.731.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10365.731.1
Unique NamemRNA_H-fluviatilis_contig10365.731.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10365.731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10365contigH-fluviatilis_contig10365:3300..4144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size845
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10365.731.1prot_H-fluviatilis_contig10365.731.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10365 3538..3966 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929088.4193163-UTR-H-fluviatilis_contig10365:3299..35371622929088.4193163-UTR-H-fluviatilis_contig10365:3299..3537Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10365 3300..3537 +
1691135177.635296-UTR-H-fluviatilis_contig10365:3299..35371691135177.635296-UTR-H-fluviatilis_contig10365:3299..3537Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10365 3300..3537 +
1622929088.4382105-UTR-H-fluviatilis_contig10365:3966..41441622929088.4382105-UTR-H-fluviatilis_contig10365:3966..4144Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10365 3967..4144 +
1691135177.6577463-UTR-H-fluviatilis_contig10365:3966..41441691135177.6577463-UTR-H-fluviatilis_contig10365:3966..4144Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10365 3967..4144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929088.4293404-CDS-H-fluviatilis_contig10365:3537..39661622929088.4293404-CDS-H-fluviatilis_contig10365:3537..3966Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10365 3538..3966 +
1691135177.6455529-CDS-H-fluviatilis_contig10365:3537..39661691135177.6455529-CDS-H-fluviatilis_contig10365:3537..3966Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10365 3538..3966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10365.731.1

>prot_H-fluviatilis_contig10365.731.1 ID=prot_H-fluviatilis_contig10365.731.1|Name=mRNA_H-fluviatilis_contig10365.731.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=143bp
MGEYTAYFPSILSFHFLFVLCVFLCSIEVAMSECGYASPSWKTSWFRTNI
FSMCWCYCYVVCLLCDPVVFIFLLVACSEVLFVLFFEPLRTEFRSHKKKI
QRLVWVLLCWSLLISVCQCSSTTLHVDRSIRATKAKKGTSSK*
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mRNA from alignment at H-fluviatilis_contig10365:3300..4144+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10365.731.1 ID=mRNA_H-fluviatilis_contig10365.731.1|Name=mRNA_H-fluviatilis_contig10365.731.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=845bp|location=Sequence derived from alignment at H-fluviatilis_contig10365:3300..4144+ (Heribaudiella fluviatilis SAG_13_90)
GGGGGTACACGTGGGGGGGGGCAGTTTCAACTCATTGAACACGGGAAATA
ATCAACGGGATGAATTGTGTTAGAAGAGACAAACAAGAGATAGCAAGAGC
AAGTGAGGCGTCACCAGAGAGAAAGCACACAAAAACACCGACCAAAAGCA
GGGTGAGGAGGACAAGAATAGCGTAGAGATAGTTTTATGCAAAGAATGGT
CGATGCGCGTTCTGGGGGTCGGCCGTCAATTTTACTAAATGGGGGAATAT
ACGGCTTATTTTCCAAGTATTCTTTCGTTTCATTTTTTGTTTGTGTTATG
CGTCTTTTTGTGTTCGATCGAAGTTGCAATGAGTGAGTGTGGTTACGCTA
GTCCAAGCTGGAAGACGTCATGGTTTCGTACCAACATATTTTCCATGTGT
TGGTGTTATTGTTATGTTGTCTGTCTTCTCTGTGACCCTGTTGTTTTTAT
ATTTCTCCTCGTTGCTTGCTCTGAAGTTTTGTTTGTTTTGTTTTTTGAAC
CATTGCGTACCGAGTTTCGTTCACACAAGAAGAAGATTCAACGGTTGGTT
TGGGTGCTGCTGTGTTGGTCGTTGTTAATTAGTGTCTGTCAGTGTTCTAG
TACTACCCTACACGTCGATCGCTCGATACGAGCGACGAAAGCAAAGAAAG
GCACGTCAAGTAAGTAGGGAGAGAGCGATGGATGGCCTTCAGCGGTCAGT
GGTCCTCGTGTCGTTCGTAGTTGGTCTGTTCTCATCATGCCATCTGTTCT
TCTGTCTTGTCTCTCGTTTGTCTCTGCTGCATATGAAAATTCACATCCTT
GATCGGATCTCTCTCTCTGTCACACTTACTTACATATCATGTACC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10365:3300..4144+

>mRNA_H-fluviatilis_contig10365.731.1 ID=mRNA_H-fluviatilis_contig10365.731.1|Name=mRNA_H-fluviatilis_contig10365.731.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=858bp|location=Sequence derived from alignment at H-fluviatilis_contig10365:3300..4144+ (Heribaudiella fluviatilis SAG_13_90)
ATGGGGGAATATACGGCTTATTTTCCAAGTATTCTTTCGTTTCATTTTTT
GTTTGTGTTATGCGTCTTTTTGTGTTCGATCGAAGTTGCAATGAGTGAGT
GTGGTTACGCTAGTCCAAGCTGGAAGACGTCATGGTTTCGTACCAACATA
TTTTCCATGTGTTGGTGTTATTGTTATGTTGTCTGTCTTCTCTGTGACCC
TGTTGTTTTTATATTTCTCCTCGTTGCTTGCTCTGAAGTTTTGTTTGTTT
TGTTTTTTGAACCATTGCGTACCGAGTTTCGTTCACACAAGAAGAAGATT
CAACGGTTGGTTTGGGTGCTGCTGTGTTGGTCGTTGTTAATTAGTGTCTG
TCAGTGTTCTAGTACTACCCTACACGTCGATCGCTCGATACGAGCGACGA
AAGCAAAGAAAGGCACGTCAAGTAAGTAGATGGGGGAATATACGGCTTAT
TTTCCAAGTATTCTTTCGTTTCATTTTTTGTTTGTGTTATGCGTCTTTTT
GTGTTCGATCGAAGTTGCAATGAGTGAGTGTGGTTACGCTAGTCCAAGCT
GGAAGACGTCATGGTTTCGTACCAACATATTTTCCATGTGTTGGTGTTAT
TGTTATGTTGTCTGTCTTCTCTGTGACCCTGTTGTTTTTATATTTCTCCT
CGTTGCTTGCTCTGAAGTTTTGTTTGTTTTGTTTTTTGAACCATTGCGTA
CCGAGTTTCGTTCACACAAGAAGAAGATTCAACGGTTGGTTTGGGTGCTG
CTGTGTTGGTCGTTGTTAATTAGTGTCTGTCAGTGTTCTAGTACTACCCT
ACACGTCGATCGCTCGATACGAGCGACGAAAGCAAAGAAAGGCACGTCAA
GTAAGTAG
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