mRNA_H-fluviatilis_contig103649.730.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103649.730.1
Unique NamemRNA_H-fluviatilis_contig103649.730.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig103649.730.1 vs. uniprot
Match: A0A6H5JUF8_9PHAE (APG6 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF8_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.860e-37
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 1
Query:   31 GALNDSFHIWRKGPFATINGFRVGRLPTDLVDWQEVNAGVGQAALVLVTVAMAMGVEFSKYLIAPCGSFTKIARSE 258
            GALND FHIW +GPF TINGFRVGRL T +VDWQEVNAGVGQAA+VLVTVAMAMGVEF+KYLIAPCGSFTKIARSE
Sbjct:  243 GALNDCFHIWHQGPFGTINGFRVGRLNTHVVDWQEVNAGVGQAAIVLVTVAMAMGVEFTKYLIAPCGSFTKIARSE 318          
BLAST of mRNA_H-fluviatilis_contig103649.730.1 vs. uniprot
Match: A0A507F4Z8_9FUNG (Uncharacterized protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507F4Z8_9FUNG)

HSP 1 Score: 87.8 bits (216), Expect = 1.230e-18
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   19 LSSSGALNDSFHIWRKGPFATINGFRVGRLPTDLVDWQEVNAGVGQAALVLVTVAMAMGVEFSKYLIAPCGSFTKIARSE 258
            L  +   ND+F IW  GPF TINGFR+GRLP   VDW E+NA +GQA L+L T+A  +   F+ Y + P GSF++I ++E
Sbjct:  225 LKKTNVYNDTFRIWHDGPFGTINGFRMGRLPNQPVDWSEINAAMGQALLLLDTMASKLNFTFTGYRLVPMGSFSRIEKTE 304          
BLAST of mRNA_H-fluviatilis_contig103649.730.1 vs. uniprot
Match: A0A485LFQ8_9STRA (Aste57867_20703 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFQ8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.670e-18
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   37 LNDSFHIWRKGPFATINGFRVGRLPTDLVDWQEVNAGVGQAALVLVTVAMAMGVEFSKYLIAPCGSFTKIAR 252
            LND+F+IW KGPF TI+GF +GRLP   +DW E+NA  G+  LV+V +A A+GV    Y I P GSF+K+ R
Sbjct:  172 LNDAFYIWHKGPFGTISGFCLGRLPRHHIDWNEINAAWGEVGLVVVLLAEALGVHLKAYQIVPLGSFSKVIR 243          
BLAST of mRNA_H-fluviatilis_contig103649.730.1 vs. uniprot
Match: A0A0L0HHY1_SPIPD (Uncharacterized protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HHY1_SPIPD)

HSP 1 Score: 86.3 bits (212), Expect = 7.280e-18
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   19 LSSSGALNDSFHIWRKGPFATINGFRVGRLPTDLVDWQEVNAGVGQAALVLVTVAMAMGVEFSKYLIAPCGSFTKIARSE 258
            L  +   ND+F IW  GPF TINGFR+GRLP   VDW E+NA +GQA L+L T+A  +   F  Y + P GSF++I +++
Sbjct:  291 LKKTNVYNDTFRIWHDGPFGTINGFRMGRLPNQPVDWSEINAAMGQALLLLDTMASKLNFTFKGYRLVPMGSFSRIEKTD 370          
BLAST of mRNA_H-fluviatilis_contig103649.730.1 vs. uniprot
Match: A0A7S0DBW3_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DBW3_MICPS)

HSP 1 Score: 85.9 bits (211), Expect = 1.030e-17
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1
Query:   19 LSSSGALNDSFHIWRKGPFATINGFRVGRLPTDLVDWQEVNAGVGQAALVLVTVAMAMGVEFSKYLIAPCGSFTKI 246
            L  +   ND+FHIW  GPF T+NGFR+GRLP   V+W E+NA  G A L+L T++ A GV F  Y + P GSF+K+
Sbjct:  308 LRKTNVFNDAFHIWFDGPFGTVNGFRLGRLPNAPVEWDEINAAWGMACLLLSTMSHAAGVTFEHYTLKPLGSFSKV 383          
BLAST of mRNA_H-fluviatilis_contig103649.730.1 vs. uniprot
Match: A0A4P9WRA3_9FUNG (Atg6/Beclin (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WRA3_9FUNG)

HSP 1 Score: 84.3 bits (207), Expect = 1.140e-17
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   19 LSSSGALNDSFHIWRKGPFATINGFRVGRLPTDLVDWQEVNAGVGQAALVLVTVAMAMGVEFSKYLIAPCGSFTKIAR 252
            L  +   ND+F IW  GPF TINGFR+GRLP   VDW E+NA +GQA L+L T+A  +   F  Y + P GSF++I +
Sbjct:  162 LKKTNVYNDTFRIWHDGPFGTINGFRMGRLPNQPVDWSEINAAMGQALLLLDTLANKLNFMFKGYRLVPMGSFSRIEK 239          
BLAST of mRNA_H-fluviatilis_contig103649.730.1 vs. uniprot
Match: A0A818VMA7_9BILA (Hypothetical protein n=3 Tax=Adineta steineri TaxID=433720 RepID=A0A818VMA7_9BILA)

HSP 1 Score: 85.5 bits (210), Expect = 1.340e-17
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   19 LSSSGALNDSFHIWRKGPFATINGFRVGRLPTDLVDWQEVNAGVGQAALVLVTVAMAMGVEFSKYLIAPCGSFTKI 246
            LS + A N +FHIW +  F TINGFR+GRLP+  V+W E+NAG+GQAAL+L ++A  + ++F+KY I P GS++ I
Sbjct:  261 LSKTNAFNAAFHIWHQEHFGTINGFRLGRLPSIAVEWSEINAGLGQAALLLNSLAKRIDLQFTKYRIIPLGSYSYI 336          
BLAST of mRNA_H-fluviatilis_contig103649.730.1 vs. uniprot
Match: D2UY34_NAEGR (Autophagy protein 6 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UY34_NAEGR)

HSP 1 Score: 85.5 bits (210), Expect = 1.510e-17
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   19 LSSSGALNDSFHIWRKGPFATINGFRVGRLPTDLVDWQEVNAGVGQAALVLVTVAMAMGVEFSKYLIAPCGSFTKI 246
            L+S+   ND+FHIW +G F TIN FR+GRLPT  V+W E+NA  GQAAL+L +++      FSKY I P GSF++I
Sbjct:  474 LNSTNVFNDAFHIWYEGHFGTINNFRLGRLPTQNVEWNEINAAWGQAALLLFSLSKHKHFAFSKYKIIPMGSFSRI 549          
BLAST of mRNA_H-fluviatilis_contig103649.730.1 vs. uniprot
Match: A0A3M6V8C9_9STRA (APG6 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8C9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.750e-17
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   40 NDSFHIWRKGPFATINGFRVGRLPTDLVDWQEVNAGVGQAALVLVTVAMAMGVEFSKYLIAPCGSFTKI 246
            ND FHIW  G F TING R+GRLP+  V+W E+NA +GQA L+L T+A   G EFS+  + P GSF+++
Sbjct:   12 NDVFHIWHDGLFGTINGLRLGRLPSKPVEWVEINAAMGQAVLLLATIADRAGFEFSRNRLVPRGSFSRV 80          
BLAST of mRNA_H-fluviatilis_contig103649.730.1 vs. uniprot
Match: A0A814AX79_ADIRI (Hypothetical protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814AX79_ADIRI)

HSP 1 Score: 85.1 bits (209), Expect = 1.830e-17
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   19 LSSSGALNDSFHIWRKGPFATINGFRVGRLPTDLVDWQEVNAGVGQAALVLVTVAMAMGVEFSKYLIAPCGSFTKI 246
            LS + A N +FHIW +  F TINGFR+GRLP+  V+W E+NAG+GQAAL+L ++A  + + F+KY I P GS++ I
Sbjct:  260 LSKTNAFNAAFHIWHQEHFGTINGFRLGRLPSITVEWSEINAGLGQAALLLNSLAKRIDLRFNKYRIVPLGSYSYI 335          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103649.730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUF8_9PHAE1.860e-3788.16APG6 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A507F4Z8_9FUNG1.230e-1850.00Uncharacterized protein n=1 Tax=Spizellomyces sp. ... [more]
A0A485LFQ8_9STRA2.670e-1854.17Aste57867_20703 protein n=1 Tax=Aphanomyces stella... [more]
A0A0L0HHY1_SPIPD7.280e-1848.75Uncharacterized protein n=1 Tax=Spizellomyces punc... [more]
A0A7S0DBW3_MICPS1.030e-1751.32Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A4P9WRA3_9FUNG1.140e-1750.00Atg6/Beclin (Fragment) n=1 Tax=Blyttiomyces helicu... [more]
A0A818VMA7_9BILA1.340e-1752.63Hypothetical protein n=3 Tax=Adineta steineri TaxI... [more]
D2UY34_NAEGR1.510e-1753.95Autophagy protein 6 n=1 Tax=Naegleria gruberi TaxI... [more]
A0A3M6V8C9_9STRA1.750e-1753.62APG6 domain-containing protein n=1 Tax=Peronospora... [more]
A0A814AX79_ADIRI1.830e-1752.63Hypothetical protein n=3 Tax=Adineta ricciae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103649contigH-fluviatilis_contig103649:19..712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue4.5e-31
Seed eggNOG ortholog2880.D7FJA3
KEGG koko:K08334,ko:K19683
KEGG Pathwayko04136,ko04137,ko04138,ko04140,ko04215,ko04371,ko05167,map04136,map04137,map04138,map04140,map04215,map04371,map05167
EggNOG free text desc.cellular response to nitrogen starvation
EggNOG OGsKOG2751@1,KOG2751@2759
Ec32 ortholog descriptionBeclin
Ec32 orthologEc-12_008290.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929088.376318-CDS-H-fluviatilis_contig103649:18..981622929088.376318-CDS-H-fluviatilis_contig103649:18..98Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103649 19..98 -
1691135177.6026437-CDS-H-fluviatilis_contig103649:18..981691135177.6026437-CDS-H-fluviatilis_contig103649:18..98Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103649 19..98 -
1622929088.386949-CDS-H-fluviatilis_contig103649:534..7121622929088.386949-CDS-H-fluviatilis_contig103649:534..712Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103649 535..712 -
1691135177.6181765-CDS-H-fluviatilis_contig103649:534..7121691135177.6181765-CDS-H-fluviatilis_contig103649:534..712Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103649 535..712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103649.730.1prot_H-fluviatilis_contig103649.730.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103649 19..712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103649.730.1

>prot_H-fluviatilis_contig103649.730.1 ID=prot_H-fluviatilis_contig103649.730.1|Name=mRNA_H-fluviatilis_contig103649.730.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=86bp
AALSTNLSSSGALNDSFHIWRKGPFATINGFRVGRLPTDLVDWQEVNAGV
GQAALVLVTVAMAMGVEFSKYLIAPCGSFTKIARSE
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mRNA from alignment at H-fluviatilis_contig103649:19..712-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103649.730.1 ID=mRNA_H-fluviatilis_contig103649.730.1|Name=mRNA_H-fluviatilis_contig103649.730.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=694bp|location=Sequence derived from alignment at H-fluviatilis_contig103649:19..712- (Heribaudiella fluviatilis SAG_13_90)
GCGGCGTTGTCAACCAACCTCTCCTCGTCAGGTGCTCTCAACGATTCATT TCACATCTGGCGTAAGGGTCCCTTCGCGACCATTAACGGATTCAGGGTTG GCCGCCTGCCGACAGACCTGGTTGACTGGCAGGAAGTTAATGCAGGAGTC GGCCAAGCGGCTCTCGTATTGGTTACGGGTAAGAGGAGCACTGAATGCCA TCTTGTCACGCGCCAGCGGGTATCATATTTGAATTGATGCGGGTATCATG ATCATCACGGTGGTGGTGGTGGTGGTGGCCAGAAATAGATCATGCGGTGA TCGAAGTTTACAAATACGCGACCTAACAACGACAGTGTTTTTCAATATTG ATCATTGCACTAACTCATTCCACCAGCGCGACCGCGGCGCTACAGTGCTA CTCTCGCTGGAATCGGAAAAACATTTGTTGTGTCTCTCCGAAGGGATCAA TATCGCTCGATCCACACGAAAGGTGTGGAATTGTGGATTGAAATGCAGGT CGTCTCTGTTCTGCTCAGTAATAGCTCACATTTCATTATCTGCGTTCCGT ACGGTTCTTTCTCACGGGAGCTCGTCTCAGCTTCCTCCCCTTCGACCGCT TCGCGCCTTATCAGTTGCCATGGCCATGGGAGTAGAATTCTCCAAGTACC TCATCGCCCCCTGCGGGAGTTTCACCAAGATCGCCCGCTCGGAA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig103649:19..712-

>mRNA_H-fluviatilis_contig103649.730.1 ID=mRNA_H-fluviatilis_contig103649.730.1|Name=mRNA_H-fluviatilis_contig103649.730.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=516bp|location=Sequence derived from alignment at H-fluviatilis_contig103649:19..712- (Heribaudiella fluviatilis SAG_13_90)
GCGGCGTTGTCAACCAACCTCTCCTCGTCAGGTGCTCTCAACGATTCATT
TCACATCTGGCGTAAGGGTCCCTTCGCGACCATTAACGGATTCAGGGTTG
GCCGCCTGCCGACAGACCTGGTTGACTGGCAGGAAGTTAATGCAGGAGTC
GGCCAAGCGGCTCTCGTATTGGTTACGGGCGGCGTTGTCAACCAACCTCT
CCTCGTCAGGTGCTCTCAACGATTCATTTCACATCTGGCGTAAGGGTCCC
TTCGCGACCATTAACGGATTCAGGGTTGGCCGCCTGCCGACAGACCTGGT
TGACTGGCAGGAAGTTAATGCAGGAGTCGGCCAAGCGGCTCTCGTATTGG
TTACGGTTGCCATGGCCATGGGAGTAGAATTCTCCAAGTACCTCATCGCC
CCCTGCGGGAGTTTCACCAAGATCGCCCGCTCGGAATTGCCATGGCCATG
GGAGTAGAATTCTCCAAGTACCTCATCGCCCCCTGCGGGAGTTTCACCAA
GATCGCCCGCTCGGAA
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