mRNA_H-fluviatilis_contig10363.729.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10363.729.1
Unique NamemRNA_H-fluviatilis_contig10363.729.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig10363.729.1 vs. uniprot
Match: F4PY66_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PY66_CAVFA)

HSP 1 Score: 168 bits (425), Expect = 1.240e-47
Identity = 101/253 (39.92%), Postives = 146/253 (57.71%), Query Frame = 1
Query:    7 AISNRFFVYVNSRDRLDGTDEDFTFQINLPNDRQLDRVVMLDCLIPKSYYLCDTGRDTFVLSENGVNTTITLPHGNYSYLSFKSVLQTLLNDNTSQGYTYAVTYPSTLTQANTGKYTFTVSDNGGIQPSLIMGLTFFEPFGFTRGSTNTFVSNQLISTNVIKLSQEDKLYIHSSVVQNPNGDDILQEI-NASDNPDFSTVNYLCVAPEHYQKVLKSQNSKVFRFTLTDEDGNIMNLNGLNMNFTLLFFLRSNI 762
            +I+++   Y+NS +R+ GT+  F + I      + DRV +L   IPKS+Y      ++F L E+  +T IT+P GNYS  S +  L+  LN+ +     YA+ +P T  Q NTGKY FT +    IQP        F   GF + + N FV+N L+STNVI L  ++ L IHS +  N + DDILQEI +A+ +PDFS +++     E Y K L S     F   LTD+DGN +NLNG+NMN TL+ F  +++
Sbjct:    2 SITHKKLFYINSHNRISGTNSRFKYSITYYPQDKFDRVALLQATIPKSFYTVRKNLNSFTLIEDDQSTVITIPIGNYSRKSLQDTLEKKLNELSPNQVKYAINWP-TSQQPNTGKYIFTCASTRDIQPVFSFTNQLFRHLGFDKDTKNQFVNNVLVSTNVINLQSDNVLSIHSDLCSNGD-DDILQEIYSAAGSPDFSNIHWQNYDLEAYSKQLVSNTKTSFTIYLTDQDGNEVNLNGVNMNLTLILFKHNDV 252          
BLAST of mRNA_H-fluviatilis_contig10363.729.1 vs. uniprot
Match: A0A151ZGY8_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZGY8_9MYCE)

HSP 1 Score: 177 bits (448), Expect = 2.560e-47
Identity = 107/265 (40.38%), Postives = 151/265 (56.98%), Query Frame = 1
Query:    1 MSAISNRFFVYVNSRDRLDGTDEDFTFQINLPNDRQLDRVVMLDCLIPKSYYLCDTGRDTFVLSENGVNTTITLPHGNYSYLSFKSVLQTLLNDNTSQGYTYAVTYPSTLTQANTGKYTFTVSDNGGIQPSLIMGLTFFEPFGFTRGSTNTFVSNQLISTNVIKLSQEDKLYIHSSVVQNPNGDDILQEINAS-DNPDFSTVNYLCVAPEHYQKVLKSQNSKVFRFTLTDEDGNIMNLNGLNMNFTLLFFLRSNIYSEVSNFLQY 792
            MS I+++   Y+NS +R +GT+  FT  I      + DRVV+L   IPKS+Y      +TF L+E   ++TIT+P GNYS  S +  LQTLLN ++     Y++ +P++  Q NTGKYTFT S+   IQP        F   GF   ++N F +  L STNVI L  +  +YIHS +  N   DD+LQEI  S  NPDFS +++     E Y K L S  +  F   L D+DGN +NLNG+NMN TL+ +  ++I      ++ Y
Sbjct:    1 MSLITHKKIYYINSHNRTNGTNSHFTTNIVFYPQDKFDRVVLLQATIPKSFYTVRRNLNTFTLTEGLQSSTITIPIGNYSRKSLQDTLQTLLNQSSPNNIIYSINWPNSK-QPNTGKYTFTCSNVNNIQPIFTFTDKLFRQLGFNENTSNQFNNYILESTNVINLQSDSVIYIHSDICTN-GVDDVLQEIYTSAGNPDFSNIHWENYDVESYSKQLVSGTNTTFTIYLADQDGNEINLNGVNMNLTLMLYKHNDISQLTRGYINY 263          
BLAST of mRNA_H-fluviatilis_contig10363.729.1 vs. uniprot
Match: F4PG64_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PG64_CAVFA)

HSP 1 Score: 154 bits (390), Expect = 2.510e-41
Identity = 99/238 (41.60%), Postives = 135/238 (56.72%), Query Frame = 1
Query:   10 ISNRFFVYVNSRDRLDGTDEDFTFQI-NLPNDRQLDRVVMLDCLIPKSYYLCDTGRDTFVLSENGVNTTITLPHGNYSYLSFKSVLQTLLNDNTSQGYTYAVTYPSTLTQANTGKYTFTVSDNGGIQPSLIMGLTFFEPFGFTRGSTNTFVSNQLISTNVIKLSQEDKLYIHSSVVQNPNGDDILQEI-NASDNPDFSTVNYLCVAPEHYQKVLKSQNSKVFRFTLTDEDGNIMNLNG 717
            I+++   Y+NS +R+ GT+  F + I   P DR  DRV +L   IPKS+Y    G +TF L E+  +T I++P GNYS  S +  L+  LN  +     YA+ +P T  Q NTGKY FT +    IQP        F   GF + STN F +N L STNVI L  ++ L+IHS +  N + DDILQE+ +A+ N DFS +++     E Y K L S     F   LTD+DGN +NLNG
Sbjct:    3 ITHKKIFYINSHNRISGTNSKFKYNIIYYPQDR-FDRVALLQATIPKSFYTVGRGLNTFELIEDDQSTIISIPVGNYSRKSLQDTLEKQLNALSPNNVKYAIGWP-TSQQPNTGKYIFTCASTRDIQPIFSFTNQLFRHLGFNKDSTNKFNNNILESTNVINLQSDNVLFIHSDLCSNGD-DDILQEVYSAAGNADFSNIHWQNYDVESYSKQLVSNTKTSFTIYLTDQDGNEVNLNG 237          
BLAST of mRNA_H-fluviatilis_contig10363.729.1 vs. uniprot
Match: F4Q272_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q272_CAVFA)

HSP 1 Score: 154 bits (390), Expect = 2.260e-39
Identity = 98/239 (41.00%), Postives = 135/239 (56.49%), Query Frame = 1
Query:   10 ISNRFFVYVNSRDRLDGTDEDFTFQI-NLPNDRQLDRVVMLDCLIPKSYYLCDTGRDTFVLSENGVNTTITLPHGNYSYLSFKSVLQTLLNDNTSQGYTYAVTYPSTLTQANTGKYTFTVSDNGGIQPSLIMGLTFFEPFGFTRGSTNTFVSNQLISTNVIKLSQEDKLYIHSSVVQNPNGDDILQEI-NASDNPDFSTVNYLCVAPEHYQKVLKSQNSKVFRFTLTDEDGNIMNLNGL 720
            I+++   Y+NS +R+ GT+  F + I   P DR  DRV +L   IPKS+Y    G +TF L E+  +T I++P GNYS  S +   +  LN  +     YA+ +P T  Q NTGKY FT +    IQP        F   GF + STN F +N L STNVI L  ++ L+IHS +  N + DDILQE+ +A+ N DFS +++     E Y K L S     F   LTD+DGN +NLNG+
Sbjct:    3 ITHKKIFYINSHNRISGTNSKFKYNIIYYPQDR-FDRVALLQAAIPKSFYTVGRGLNTFELIEDDQSTIISIPVGNYSRKSLQDTFEKQLNALSPNNVKYAINWP-TSQQPNTGKYIFTCASTRDIQPIFSFTNQLFRHLGFNKDSTNKFNNNILESTNVINLQSDNVLFIHSDLCSNGD-DDILQEVYSAAGNADFSNIHWQNYDVESYSKQLVSNTKTSFTIYLTDQDGNEVNLNGI 238          
BLAST of mRNA_H-fluviatilis_contig10363.729.1 vs. uniprot
Match: A0A4Q7DGT8_9PROT (Uncharacterized protein n=1 Tax=Candidatus Finniella inopinata TaxID=1696036 RepID=A0A4Q7DGT8_9PROT)

HSP 1 Score: 109 bits (273), Expect = 1.060e-25
Identity = 65/186 (34.95%), Postives = 106/186 (56.99%), Query Frame = 1
Query:  211 TITLPHGNYSYLSFKSVLQTLLNDNTSQGYTYAVTYPSTLTQANTGKYTFTVSDNGGI------QPSLIMGL-TFFEPFGFTRGSTNTFVSNQLISTNVIKLSQEDKLYIHSSVVQNPNGDDILQEINASDNPDFSTVNYLCVAPEHYQKVLKSQNSKVFRFTLTDEDGNIMNLNGLNMNFTLLFF 747
            ++++P GNY+ L+F +VL   +   +   + Y +++P+   QANTGK+T TV+ NG +      QPSLI    + +E  GFT+G T  F SN L S NVI +  E  + IHS +  N   DD+L+ +  ++N   S   + C    ++ K L++  S  + F++TDE    +NLNG N+ F+++ F
Sbjct:    6 SVSIPPGNYNALTFATVLSRAMTTASLHSWVYQISFPNGYVQANTGKFTITVTGNGNLPPGNANQPSLIFDTNSVYEQMGFTQG-TFAFTSNSLESPNVICMVPETNILIHSDICDN-GSDDVLETVYYNNNQPLSNATFQCNDVLNWSKKLRTNQSNTYTFSITDEHNFELNLNGRNVLFSIILF 189          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10363.729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
F4PY66_CAVFA1.240e-4739.92Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A151ZGY8_9MYCE2.560e-4740.38Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
F4PG64_CAVFA2.510e-4141.60Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
F4Q272_CAVFA2.260e-3941.00Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A4Q7DGT8_9PROT1.060e-2534.95Uncharacterized protein n=1 Tax=Candidatus Finniel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10363contigH-fluviatilis_contig10363:3709..4506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size798
Cds size798
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929088.3396697-CDS-H-fluviatilis_contig10363:3708..45061622929088.3396697-CDS-H-fluviatilis_contig10363:3708..4506Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10363 3709..4506 +
1691135177.578195-CDS-H-fluviatilis_contig10363:3708..45061691135177.578195-CDS-H-fluviatilis_contig10363:3708..4506Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10363 3709..4506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10363.729.1prot_H-fluviatilis_contig10363.729.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10363 3709..4506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10363.729.1

>prot_H-fluviatilis_contig10363.729.1 ID=prot_H-fluviatilis_contig10363.729.1|Name=mRNA_H-fluviatilis_contig10363.729.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=266bp
MSAISNRFFVYVNSRDRLDGTDEDFTFQINLPNDRQLDRVVMLDCLIPKS
YYLCDTGRDTFVLSENGVNTTITLPHGNYSYLSFKSVLQTLLNDNTSQGY
TYAVTYPSTLTQANTGKYTFTVSDNGGIQPSLIMGLTFFEPFGFTRGSTN
TFVSNQLISTNVIKLSQEDKLYIHSSVVQNPNGDDILQEINASDNPDFST
VNYLCVAPEHYQKVLKSQNSKVFRFTLTDEDGNIMNLNGLNMNFTLLFFL
RSNIYSEVSNFLQYFV
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mRNA from alignment at H-fluviatilis_contig10363:3709..4506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10363.729.1 ID=mRNA_H-fluviatilis_contig10363.729.1|Name=mRNA_H-fluviatilis_contig10363.729.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=798bp|location=Sequence derived from alignment at H-fluviatilis_contig10363:3709..4506+ (Heribaudiella fluviatilis SAG_13_90)
ATGTCAGCAATTTCAAATAGATTCTTTGTTTATGTTAATAGTAGAGATAG ATTAGATGGTACTGATGAGGATTTTACATTCCAAATTAACTTACCAAATG ATAGACAACTTGATCGTGTTGTTATGTTAGATTGTTTAATTCCAAAGAGT TATTATTTATGTGATACAGGCAGAGATACGTTTGTGTTGAGTGAAAATGG TGTCAACACAACAATCACACTGCCCCATGGTAATTATTCATATCTTTCGT TCAAATCAGTATTACAAACATTGTTGAATGACAACACATCACAAGGGTAC ACGTATGCTGTTACATATCCTTCAACACTAACACAAGCAAACACAGGTAA ATACACATTCACTGTTAGTGATAATGGTGGTATACAACCTTCATTGATAA TGGGGTTAACATTCTTTGAACCGTTTGGATTTACAAGGGGTTCTACCAAT ACATTTGTTTCAAATCAACTCATATCAACAAACGTAATAAAATTAAGTCA AGAAGACAAACTATACATTCACAGCAGTGTGGTACAGAATCCAAATGGTG ATGACATCTTACAAGAGATAAATGCATCAGACAACCCAGATTTCAGTACC GTAAATTATCTATGTGTTGCTCCTGAACACTATCAGAAAGTATTGAAATC ACAGAACTCGAAGGTGTTTAGATTCACACTAACAGATGAAGATGGTAATA TAATGAACTTGAATGGATTGAATATGAACTTCACACTGTTGTTTTTCTTA CGATCAAACATATACTCAGAAGTATCAAACTTCCTGCAGTACTTTGTG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10363:3709..4506+

>mRNA_H-fluviatilis_contig10363.729.1 ID=mRNA_H-fluviatilis_contig10363.729.1|Name=mRNA_H-fluviatilis_contig10363.729.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1596bp|location=Sequence derived from alignment at H-fluviatilis_contig10363:3709..4506+ (Heribaudiella fluviatilis SAG_13_90)
ATGTCAGCAATTTCAAATAGATTCTTTGTTTATGTTAATAGTAGAGATAG
ATTAGATGGTACTGATGAGGATTTTACATTCCAAATTAACTTACCAAATG
ATAGACAACTTGATCGTGTTGTTATGTTAGATTGTTTAATTCCAAAGAGT
TATTATTTATGTGATACAGGCAGAGATACGTTTGTGTTGAGTGAAAATGG
TGTCAACACAACAATCACACTGCCCCATGGTAATTATTCATATCTTTCGT
TCAAATCAGTATTACAAACATTGTTGAATGACAACACATCACAAGGGTAC
ACGTATGCTGTTACATATCCTTCAACACTAACACAAGCAAACACAGGTAA
ATACACATTCACTGTTAGTGATAATGGTGGTATACAACCTTCATTGATAA
TGGGGTTAACATTCTTTGAACCGTTTGGATTTACAAGGGGTTCTACCAAT
ACATTTGTTTCAAATCAACTCATATCAACAAACGTAATAAAATTAAGTCA
AGAAGACAAACTATACATTCACAGCAGTGTGGTACAGAATCCAAATGGTG
ATGACATCTTACAAGAGATAAATGCATCAGACAACCCAGATTTCAGTACC
GTAAATTATCTATGTGTTGCTCCTGAACACTATCAGAAAGTATTGAAATC
ACAGAACTCGAAGGTGTTTAGATTCACACTAACAGATGAAGATGGTAATA
TAATGAACTTGAATGGATTGAATATGAACTTCACACTGTTGTTTTTCTTA
CGATCAAACATATACTCAGAAGTATCAAACTTCCTGCAGTACTTTGTGAT
GTCAGCAATTTCAAATAGATTCTTTGTTTATGTTAATAGTAGAGATAGAT
TAGATGGTACTGATGAGGATTTTACATTCCAAATTAACTTACCAAATGAT
AGACAACTTGATCGTGTTGTTATGTTAGATTGTTTAATTCCAAAGAGTTA
TTATTTATGTGATACAGGCAGAGATACGTTTGTGTTGAGTGAAAATGGTG
TCAACACAACAATCACACTGCCCCATGGTAATTATTCATATCTTTCGTTC
AAATCAGTATTACAAACATTGTTGAATGACAACACATCACAAGGGTACAC
GTATGCTGTTACATATCCTTCAACACTAACACAAGCAAACACAGGTAAAT
ACACATTCACTGTTAGTGATAATGGTGGTATACAACCTTCATTGATAATG
GGGTTAACATTCTTTGAACCGTTTGGATTTACAAGGGGTTCTACCAATAC
ATTTGTTTCAAATCAACTCATATCAACAAACGTAATAAAATTAAGTCAAG
AAGACAAACTATACATTCACAGCAGTGTGGTACAGAATCCAAATGGTGAT
GACATCTTACAAGAGATAAATGCATCAGACAACCCAGATTTCAGTACCGT
AAATTATCTATGTGTTGCTCCTGAACACTATCAGAAAGTATTGAAATCAC
AGAACTCGAAGGTGTTTAGATTCACACTAACAGATGAAGATGGTAATATA
ATGAACTTGAATGGATTGAATATGAACTTCACACTGTTGTTTTTCTTACG
ATCAAACATATACTCAGAAGTATCAAACTTCCTGCAGTACTTTGTG
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