mRNA_H-fluviatilis_contig103620.728.1 (mRNA) Heribaudiella fluviatilis SAG_13_90
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Overview
Homology
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: A0A078FZC8_BRANA ((rape) hypothetical protein n=6 Tax=Brassica TaxID=3705 RepID=A0A078FZC8_BRANA) HSP 1 Score: 72.0 bits (175), Expect = 9.810e-14 Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 109 WKEEQYRLRRKVIQHDQFDFDLPDDTKIA--TKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
W EEQ R+++K+I HD F + LP T+ + ++ L+Y+GGVD+SF KD +VACA LVV+E PSL V
Sbjct: 19 WTEEQDRVKKKLITHDDFPWKLPSSTEHSQGSETLKYVGGVDISFSKDDSSVACACLVVLELPSLRV 85
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: A0A8J4PRQ2_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PRQ2_9MYCE) HSP 1 Score: 73.9 bits (180), Expect = 1.230e-13 Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 61 MDNN--QVVNELDKYSAMWKEEQYRLRRKVIQHDQFDFDLPDDTKIATKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
MDNN + +E DK W + Q LR ++I+ DQ F+L D+T L+Y+GGVD+SFVKD++ ACA LVV+EYP++++
Sbjct: 1 MDNNTNDIESENDKVKEEWIKIQDELRNQLIEKDQLSFNLKDNT------LKYIGGVDISFVKDNQEDACACLVVLEYPTMKI 77
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: Q556Q1_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q556Q1_DICDI) HSP 1 Score: 74.3 bits (181), Expect = 1.490e-13 Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 58 NMDNNQVVNELDKYSAMWKEEQYRLRRKVIQHDQFDFDLPDDTKIATKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
N Q+ E + W E Q L++ +I+ D F+F + D+ K+ T L+Y+GGVD+SFVKD++ ACA+L+V+EYPSL++
Sbjct: 14 NSQPKQLTKEEIEQQDKWIEIQNELKKSLIEKDDFNFKIDDENKMNTT-LKYIGGVDISFVKDNDIDACASLIVIEYPSLKI 94
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: A0A0D3EAL3_BRAOL (Uncharacterized protein n=2 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3EAL3_BRAOL) HSP 1 Score: 72.0 bits (175), Expect = 3.570e-13 Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 109 WKEEQYRLRRKVIQHDQFDFDLPDDTKIA--TKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
W EEQ R+++K+I HD F + LP T+ + ++ L+Y+GGVD+SF KD +VACA LVV+E PSL V
Sbjct: 34 WTEEQDRVKKKLITHDDFPWKLPSSTEHSQGSETLKYVGGVDISFSKDDSSVACACLVVLELPSLRV 100
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: A0A078GDY2_BRANA (BnaA08g12640D protein n=8 Tax=Brassica TaxID=3705 RepID=A0A078GDY2_BRANA) HSP 1 Score: 72.4 bits (176), Expect = 5.010e-13 Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 109 WKEEQYRLRRKVIQHDQFDFDLPDDTKIA--TKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
W EEQ RL++K+I HD F + LP T+ ++ L+Y+GGVD+SF KD +VACA LVV+E PSL V
Sbjct: 19 WTEEQDRLKKKLITHDDFPWKLPSSTEHPQRSETLKYVGGVDISFSKDDSSVACACLVVLELPSLRV 85
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: F0ZC78_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZC78_DICPU) HSP 1 Score: 68.2 bits (165), Expect = 2.280e-11 Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 1
Query: 73 QVVNELDKYSAMWKEEQYRLRRKVIQHDQFDFDLPD----DTKIATKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
++ E + W Q L+ +I+ DQ DF +P D + K L+Y+GGVD+SFVKD++ ACAAL+V+EYPSL++
Sbjct: 22 ELTPEEKEIQEKWINIQNELKTSLIEIDQIDFSIPGVGDGDNQNHKKELKYIGGVDISFVKDNQEDACAALIVLEYPSLKI 102
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: A0A1Q3B6T2_CEPFO (Endonuclease_5 domain-containing protein n=2 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3B6T2_CEPFO) HSP 1 Score: 65.9 bits (159), Expect = 1.450e-10 Identity = 32/75 (42.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query: 82 NELDKYSAMWKEEQYRLRRKVIQHDQFDFDLPDDTKIATKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEVK 306
++L+ A W + Q L++K+I D FD+ LP T+ L+Y+GGVD+SF K S ++AC LVV+E PSL+++
Sbjct: 26 HQLNHNYANWLQIQDTLKKKLILEDDFDWKLPTPTEEEHVLLKYVGGVDISFSKHSNSIACGCLVVLELPSLQIE 100
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: A0A565CB12_9BRAS (Uncharacterized protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CB12_9BRAS) HSP 1 Score: 64.3 bits (155), Expect = 5.460e-10 Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 1
Query: 109 WKEEQYRLRRKVIQHDQFDFDLPDDTKIA--TKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
W+EEQ RL+ K+I +D F + L ++ ++ L+Y+GGVD+SF K+ +VACA LVV+E PSL +
Sbjct: 19 WREEQDRLKEKLIAYDDFPWKLSSSMELREESETLKYVGGVDMSFSKEDSSVACACLVVLELPSLRL 85
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: F4PGG6_CAVFA (Endonuclease V n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PGG6_CAVFA) HSP 1 Score: 63.5 bits (153), Expect = 1.110e-9 Identity = 34/91 (37.36%), Postives = 54/91 (59.34%), Query Frame = 1
Query: 58 NMDNNQVVNELDKYSAMWKEEQYRLRRKVIQHDQFDFDLPDDTKIATKP---------LRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
N N++ E++ + W Q L+ K I HDQ D+ +P++ L+Y+GGVD+SFVKD++ ACA+L+++EYPSL+V
Sbjct: 16 NQKNSEEYKEIE---SQWIVIQNELKTKHITHDQIDWVIPNNXXXXXXXXXXXXXXXTLKYVGGVDISFVKDNDEDACASLIILEYPSLKV 103
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: A0A6P7YHT2_9AMPH (endonuclease V isoform X1 n=2 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7YHT2_9AMPH) HSP 1 Score: 59.7 bits (143), Expect = 2.250e-8 Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1
Query: 67 NNQVVNELDKYSAMWKEEQYRLRRKVIQHDQFDFDLPDDTKIATKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
+ + E + A W+ EQ +L+ K+I++D D+ +D A L+ +GGVDLS++K ++ ACA+LVV+ YP LEV
Sbjct: 13 DESLSQEEQEIRARWEREQNQLKSKLIEYDTEDWQ--EDASFAG--LQRIGGVDLSYIKGDDSTACASLVVLSYPDLEV 87 The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig103620.728.1 >prot_H-fluviatilis_contig103620.728.1 ID=prot_H-fluviatilis_contig103620.728.1|Name=mRNA_H-fluviatilis_contig103620.728.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=84bp MDNNQVVNELDKYSAMWKEEQYRLRRKVIQHDQFDFDLPDDTKIATKPLRback to top mRNA from alignment at H-fluviatilis_contig103620:169..703+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-fluviatilis_contig103620.728.1 ID=mRNA_H-fluviatilis_contig103620.728.1|Name=mRNA_H-fluviatilis_contig103620.728.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=535bp|location=Sequence derived from alignment at H-fluviatilis_contig103620:169..703+ (Heribaudiella fluviatilis SAG_13_90)back to top Coding sequence (CDS) from alignment at H-fluviatilis_contig103620:169..703+ >mRNA_H-fluviatilis_contig103620.728.1 ID=mRNA_H-fluviatilis_contig103620.728.1|Name=mRNA_H-fluviatilis_contig103620.728.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=504bp|location=Sequence derived from alignment at H-fluviatilis_contig103620:169..703+ (Heribaudiella fluviatilis SAG_13_90)back to top |