mRNA_H-fluviatilis_contig103620.728.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103620.728.1
Unique NamemRNA_H-fluviatilis_contig103620.728.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: A0A078FZC8_BRANA ((rape) hypothetical protein n=6 Tax=Brassica TaxID=3705 RepID=A0A078FZC8_BRANA)

HSP 1 Score: 72.0 bits (175), Expect = 9.810e-14
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  109 WKEEQYRLRRKVIQHDQFDFDLPDDTKIA--TKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
            W EEQ R+++K+I HD F + LP  T+ +  ++ L+Y+GGVD+SF KD  +VACA LVV+E PSL V
Sbjct:   19 WTEEQDRVKKKLITHDDFPWKLPSSTEHSQGSETLKYVGGVDISFSKDDSSVACACLVVLELPSLRV 85          
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: A0A8J4PRQ2_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PRQ2_9MYCE)

HSP 1 Score: 73.9 bits (180), Expect = 1.230e-13
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   61 MDNN--QVVNELDKYSAMWKEEQYRLRRKVIQHDQFDFDLPDDTKIATKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
            MDNN   + +E DK    W + Q  LR ++I+ DQ  F+L D+T      L+Y+GGVD+SFVKD++  ACA LVV+EYP++++
Sbjct:    1 MDNNTNDIESENDKVKEEWIKIQDELRNQLIEKDQLSFNLKDNT------LKYIGGVDISFVKDNQEDACACLVVLEYPTMKI 77          
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: Q556Q1_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q556Q1_DICDI)

HSP 1 Score: 74.3 bits (181), Expect = 1.490e-13
Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   58 NMDNNQVVNELDKYSAMWKEEQYRLRRKVIQHDQFDFDLPDDTKIATKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
            N    Q+  E  +    W E Q  L++ +I+ D F+F + D+ K+ T  L+Y+GGVD+SFVKD++  ACA+L+V+EYPSL++
Sbjct:   14 NSQPKQLTKEEIEQQDKWIEIQNELKKSLIEKDDFNFKIDDENKMNTT-LKYIGGVDISFVKDNDIDACASLIVIEYPSLKI 94          
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: A0A0D3EAL3_BRAOL (Uncharacterized protein n=2 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3EAL3_BRAOL)

HSP 1 Score: 72.0 bits (175), Expect = 3.570e-13
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  109 WKEEQYRLRRKVIQHDQFDFDLPDDTKIA--TKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
            W EEQ R+++K+I HD F + LP  T+ +  ++ L+Y+GGVD+SF KD  +VACA LVV+E PSL V
Sbjct:   34 WTEEQDRVKKKLITHDDFPWKLPSSTEHSQGSETLKYVGGVDISFSKDDSSVACACLVVLELPSLRV 100          
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: A0A078GDY2_BRANA (BnaA08g12640D protein n=8 Tax=Brassica TaxID=3705 RepID=A0A078GDY2_BRANA)

HSP 1 Score: 72.4 bits (176), Expect = 5.010e-13
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  109 WKEEQYRLRRKVIQHDQFDFDLPDDTKIA--TKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
            W EEQ RL++K+I HD F + LP  T+    ++ L+Y+GGVD+SF KD  +VACA LVV+E PSL V
Sbjct:   19 WTEEQDRLKKKLITHDDFPWKLPSSTEHPQRSETLKYVGGVDISFSKDDSSVACACLVVLELPSLRV 85          
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: F0ZC78_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZC78_DICPU)

HSP 1 Score: 68.2 bits (165), Expect = 2.280e-11
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   73 QVVNELDKYSAMWKEEQYRLRRKVIQHDQFDFDLPD----DTKIATKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
            ++  E  +    W   Q  L+  +I+ DQ DF +P     D +   K L+Y+GGVD+SFVKD++  ACAAL+V+EYPSL++
Sbjct:   22 ELTPEEKEIQEKWINIQNELKTSLIEIDQIDFSIPGVGDGDNQNHKKELKYIGGVDISFVKDNQEDACAALIVLEYPSLKI 102          
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: A0A1Q3B6T2_CEPFO (Endonuclease_5 domain-containing protein n=2 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3B6T2_CEPFO)

HSP 1 Score: 65.9 bits (159), Expect = 1.450e-10
Identity = 32/75 (42.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   82 NELDKYSAMWKEEQYRLRRKVIQHDQFDFDLPDDTKIATKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEVK 306
            ++L+   A W + Q  L++K+I  D FD+ LP  T+     L+Y+GGVD+SF K S ++AC  LVV+E PSL+++
Sbjct:   26 HQLNHNYANWLQIQDTLKKKLILEDDFDWKLPTPTEEEHVLLKYVGGVDISFSKHSNSIACGCLVVLELPSLQIE 100          
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: A0A565CB12_9BRAS (Uncharacterized protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CB12_9BRAS)

HSP 1 Score: 64.3 bits (155), Expect = 5.460e-10
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  109 WKEEQYRLRRKVIQHDQFDFDLPDDTKIA--TKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
            W+EEQ RL+ K+I +D F + L    ++   ++ L+Y+GGVD+SF K+  +VACA LVV+E PSL +
Sbjct:   19 WREEQDRLKEKLIAYDDFPWKLSSSMELREESETLKYVGGVDMSFSKEDSSVACACLVVLELPSLRL 85          
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: F4PGG6_CAVFA (Endonuclease V n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PGG6_CAVFA)

HSP 1 Score: 63.5 bits (153), Expect = 1.110e-9
Identity = 34/91 (37.36%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   58 NMDNNQVVNELDKYSAMWKEEQYRLRRKVIQHDQFDFDLPDDTKIATKP---------LRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
            N  N++   E++   + W   Q  L+ K I HDQ D+ +P++                L+Y+GGVD+SFVKD++  ACA+L+++EYPSL+V
Sbjct:   16 NQKNSEEYKEIE---SQWIVIQNELKTKHITHDQIDWVIPNNXXXXXXXXXXXXXXXTLKYVGGVDISFVKDNDEDACASLIILEYPSLKV 103          
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Match: A0A6P7YHT2_9AMPH (endonuclease V isoform X1 n=2 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7YHT2_9AMPH)

HSP 1 Score: 59.7 bits (143), Expect = 2.250e-8
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   67 NNQVVNELDKYSAMWKEEQYRLRRKVIQHDQFDFDLPDDTKIATKPLRYLGGVDLSFVKDSETVACAALVVVEYPSLEV 303
            +  +  E  +  A W+ EQ +L+ K+I++D  D+   +D   A   L+ +GGVDLS++K  ++ ACA+LVV+ YP LEV
Sbjct:   13 DESLSQEEQEIRARWEREQNQLKSKLIEYDTEDWQ--EDASFAG--LQRIGGVDLSYIKGDDSTACASLVVLSYPDLEV 87          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103620.728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078FZC8_BRANA9.810e-1452.24(rape) hypothetical protein n=6 Tax=Brassica TaxID... [more]
A0A8J4PRQ2_9MYCE1.230e-1345.78Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
Q556Q1_DICDI1.490e-1342.68Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
A0A0D3EAL3_BRAOL3.570e-1352.24Uncharacterized protein n=2 Tax=Brassica oleracea ... [more]
A0A078GDY2_BRANA5.010e-1353.73BnaA08g12640D protein n=8 Tax=Brassica TaxID=3705 ... [more]
F0ZC78_DICPU2.280e-1141.98Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A1Q3B6T2_CEPFO1.450e-1042.67Endonuclease_5 domain-containing protein n=2 Tax=C... [more]
A0A565CB12_9BRAS5.460e-1046.27Uncharacterized protein n=1 Tax=Arabis nemorensis ... [more]
F4PGG6_CAVFA1.110e-937.36Endonuclease V n=1 Tax=Cavenderia fasciculata (str... [more]
A0A6P7YHT2_9AMPH2.250e-839.24endonuclease V isoform X1 n=2 Tax=Microcaecilia un... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103620contigH-fluviatilis_contig103620:169..703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog44689.DDB0233086
Preferred nameENDOV
KEGG koko:K21813
GOsGO:0000287,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004521,GO:0004536,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016888,GO:0016891,GO:0016893,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901363
EggNOG free text desc.Endonuclease V
EggNOG OGs3X8Y2@554915,COG1515@1,KOG4417@2759
COG Functional cat.L
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons5
Model size312
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103620.728.1prot_H-fluviatilis_contig103620.728.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103620 229..703 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929088.2412703-UTR-H-fluviatilis_contig103620:168..2281622929088.2412703-UTR-H-fluviatilis_contig103620:168..228Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig103620 169..228 +
1691135177.5082862-UTR-H-fluviatilis_contig103620:168..2281691135177.5082862-UTR-H-fluviatilis_contig103620:168..228Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig103620 169..228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929088.2530046-CDS-H-fluviatilis_contig103620:228..2641622929088.2530046-CDS-H-fluviatilis_contig103620:228..264Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103620 229..264 +
1691135177.5268142-CDS-H-fluviatilis_contig103620:228..2641691135177.5268142-CDS-H-fluviatilis_contig103620:228..264Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103620 229..264 +
1622929088.2648752-CDS-H-fluviatilis_contig103620:292..3701622929088.2648752-CDS-H-fluviatilis_contig103620:292..370Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103620 293..370 +
1691135177.5381386-CDS-H-fluviatilis_contig103620:292..3701691135177.5381386-CDS-H-fluviatilis_contig103620:292..370Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103620 293..370 +
1622929088.278434-CDS-H-fluviatilis_contig103620:429..4641622929088.278434-CDS-H-fluviatilis_contig103620:429..464Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103620 430..464 +
1691135177.547703-CDS-H-fluviatilis_contig103620:429..4641691135177.547703-CDS-H-fluviatilis_contig103620:429..464Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103620 430..464 +
1622929088.290289-CDS-H-fluviatilis_contig103620:530..5641622929088.290289-CDS-H-fluviatilis_contig103620:530..564Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103620 531..564 +
1691135177.5576794-CDS-H-fluviatilis_contig103620:530..5641691135177.5576794-CDS-H-fluviatilis_contig103620:530..564Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103620 531..564 +
1622929088.3034-CDS-H-fluviatilis_contig103620:634..7031622929088.3034-CDS-H-fluviatilis_contig103620:634..703Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103620 635..703 +
1691135177.5676537-CDS-H-fluviatilis_contig103620:634..7031691135177.5676537-CDS-H-fluviatilis_contig103620:634..703Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103620 635..703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103620.728.1

>prot_H-fluviatilis_contig103620.728.1 ID=prot_H-fluviatilis_contig103620.728.1|Name=mRNA_H-fluviatilis_contig103620.728.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=84bp
MDNNQVVNELDKYSAMWKEEQYRLRRKVIQHDQFDFDLPDDTKIATKPLR
YLGGVDLSFVKDSETVACAALVVVEYPSLEVKS*
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mRNA from alignment at H-fluviatilis_contig103620:169..703+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103620.728.1 ID=mRNA_H-fluviatilis_contig103620.728.1|Name=mRNA_H-fluviatilis_contig103620.728.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=535bp|location=Sequence derived from alignment at H-fluviatilis_contig103620:169..703+ (Heribaudiella fluviatilis SAG_13_90)
CAAGGGTTTGTTTGCAGGGAATTTCTGGAATACTGACTGTTCTTTGCGCT CTTTCTCAATATGGACAACAACCAAGTGGTGAATGAGCTCGATAAGGTCA GCTGTTGTTGCTCAGTCCTCGTAGTACAGTGCGATGTGGAAGGAAGAGCA GTACCGTCTGCGGAGGAAAGTGATCCAGCACGACCAGTTTGACTTCGACC TGGTACTGACACCCTCGTCGTTCACATATTGTTACGGACCTCATCCCAGC ATGTGTCTCAGCCCGACGACACCAAGATCGCCACCAAACCGCTTCGGTCT GTTCAAACAGCTGCGCGCGCGGCGTGAGCCCACTGGTGATGTATTATGTG CTGCTTCAATAGATACCTCGGTGGTGTGGATTTGAGTTTCGTCAAGGTAC TACCAATTTCATCCGCTGCTGCAAACCAACACTTAAACCAGAAAATTACT ACCACTGCATTCCCAGGATTCCGAGACGGTGGCGTGTGCAGCCTTGGTGG TGGTGGAGTACCCGTCGTTGGAGGTGAAGAGCTGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig103620:169..703+

>mRNA_H-fluviatilis_contig103620.728.1 ID=mRNA_H-fluviatilis_contig103620.728.1|Name=mRNA_H-fluviatilis_contig103620.728.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=504bp|location=Sequence derived from alignment at H-fluviatilis_contig103620:169..703+ (Heribaudiella fluviatilis SAG_13_90)
ATGGACAACAACCAAGTGGTGAATGAGCTCGATAAGATGGACAACAACCA
AGTGGTGAATGAGCTCGATAAGTACAGTGCGATGTGGAAGGAAGAGCAGT
ACCGTCTGCGGAGGAAAGTGATCCAGCACGACCAGTTTGACTTCGACCTG
TACAGTGCGATGTGGAAGGAAGAGCAGTACCGTCTGCGGAGGAAAGTGAT
CCAGCACGACCAGTTTGACTTCGACCTGCCCGACGACACCAAGATCGCCA
CCAAACCGCTTCGCCCGACGACACCAAGATCGCCACCAAACCGCTTCGAT
ACCTCGGTGGTGTGGATTTGAGTTTCGTCAAGATACCTCGGTGGTGTGGA
TTTGAGTTTCGTCAAGGATTCCGAGACGGTGGCGTGTGCAGCCTTGGTGG
TGGTGGAGTACCCGTCGTTGGAGGTGAAGAGCTGAGATTCCGAGACGGTG
GCGTGTGCAGCCTTGGTGGTGGTGGAGTACCCGTCGTTGGAGGTGAAGAG
CTGA
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