mRNA_H-fluviatilis_contig10362.727.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-fluviatilis_contig10362.727.1
Unique Name	mRNA_H-fluviatilis_contig10362.727.1
Type	mRNA
Organism	Heribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)

Homology

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BLAST of mRNA_H-fluviatilis_contig10362.727.1 vs. uniprot
Match: A0A6H5K527_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K527_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.530e-19
Identity = 49/125 (39.20%), Postives = 79/125 (63.20%), Query Frame = -1

Query:   44 DLCLLRYSPLRLTSILTAVCPFSQLLTRVSDRIKKMMHSRVMGAIFGVRSLTVQRWVQSFRIAEGGEFKIPDRAYAKHEPHSFIDDEDVTERCREWLNRRLHHRQKGEPRPRVANFRRLALTCSL 418
            D  L R   +R+  ++ AV  +  L   +++ +KK+ HSR +G   GV + TV++WV  F   + G+F +P R Y K +P  +IDDED+ E+CRE+++ R++ R+KG+PR RVA+F+R   T  L
Sbjct:  444 DTMLARVRAVRVCRVIGAVRTY--LTMEINEGVKKLAHSRAVGEAVGVHARTVRKWVTDF--CKDGKFVVPHREYVKRQPFCYIDDEDIREQCREYVDERIYRRKKGQPRFRVADFQRWVNTVCL 564

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BLAST of mRNA_H-fluviatilis_contig10362.727.1 vs. uniprot
Match: A0A6H5KDG4_9PHAE (Uncharacterized protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDG4_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.560e-19
Identity = 49/125 (39.20%), Postives = 79/125 (63.20%), Query Frame = -1

Query:   44 DLCLLRYSPLRLTSILTAVCPFSQLLTRVSDRIKKMMHSRVMGAIFGVRSLTVQRWVQSFRIAEGGEFKIPDRAYAKHEPHSFIDDEDVTERCREWLNRRLHHRQKGEPRPRVANFRRLALTCSL 418
            D  L R   +R+  ++ AV  +  L   +++ +KK+ HSR +G   GV + TV++WV  F   + G+F +P R Y K +P  +IDDED+ E+CRE+++ R++ R+KG+PR RVA+F+R   T  L
Sbjct:  439 DTMLARVRAVRVCRVIGAVRTY--LTMEINEGVKKLAHSRAVGEAVGVHARTVRKWVTDF--CKDGKFVVPHREYVKRQPFCYIDDEDIREQCREYVDERIYRRKKGQPRFRVADFQRWVNTVCL 559

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BLAST of mRNA_H-fluviatilis_contig10362.727.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.060e-19
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = -1

Query:   44 LTRVSDRIKKMMHSRVMGAIFGVRSLTVQRWVQSFRIAEGGEFKIPDRAYAKHEPHSFIDDEDVTERCREWLNRRLHHRQKGEPRPRVANFRRLALTCSL 343
            L R+++ +KK+ HSR +G   GV + TV+ WV  F   + G F +P R Y K +P  +IDDED+ E+CRE+++ R++ R+KG+PR RVA+F+R   T  L
Sbjct:   13 LGRINEGVKKLAHSRAVGKAVGVHARTVRNWVTDF--CKDGNFVVPHREYVKRQPFCYIDDEDIREQCREYVDERIYRRKKGQPRFRVADFQRWVNTVCL 110

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BLAST of mRNA_H-fluviatilis_contig10362.727.1 vs. uniprot
Match: A0A6H5K550_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K550_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.370e-16
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = -1

Query:   74 TSILTAVCPFSQLLTRVSDRIKKMMHSRVMGAIFGVRSLTVQRWVQSFRIAEGGEFKIPDRAYAKHEPHSFIDDEDVTERCREWLNRRLHHRQKGEPRPRVAN 382
            T +  AV  F QL   + D + KM HSR +G +  V   TV+RWV+ F    GG F +  R Y K E HS+IDDEDV  R RE+++RRL+ R+K EPR R+A+
Sbjct:   24 TRVARAVKHFLQL--EIRDGVTKMAHSREVGEVSEVDPTTVRRWVKEF--CNGGSFVVRKRQYNKREAHSYIDDEDVRYRLREYIDRRLYRRKKNEPRLRIAD 122

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BLAST of mRNA_H-fluviatilis_contig10362.727.1 vs. uniprot
Match: A0A6H5JJ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ42_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 7.920e-15
Identity = 41/86 (47.67%), Postives = 63/86 (73.26%), Query Frame = -1

Query:   65 IKKMMHSRVMGAIFGVRSLTVQRWVQSFRIAEGGEFKIPDRAYAKHEPHSFIDDEDVTERCREWLNRRLHHRQKGEPRPRVANFRR 322
            ++KM+HSR +G   GV + TV+RWV  F   + G+F +PDRAY K +P ++IDDED+ ++CRE+++ R++ R+KG  R RVA+F R
Sbjct:  436 VQKMVHSRAVGEGAGVHAKTVRRWVTEF--CKDGKFVVPDRAYVKRQPFTYIDDEDIRDQCREYIDERIY-RRKGT-RFRVADFHR 517

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BLAST of mRNA_H-fluviatilis_contig10362.727.1 vs. uniprot
Match: A0A6H5L7Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Z5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.130e-14
Identity = 45/119 (37.82%), Postives = 71/119 (59.66%), Query Frame = -1

Query:   35 RLTSIL-TAVCPFSQLLTRVSDRIKKMMHSRVMGAIFGVRSLTVQRWVQSFRIAEGGEFKIPDRAYAKHEPHSFIDDEDVTERCREWLNRRLHHRQKGEPRPRVANFRRLALTCSLTPI 388
            RL SI+ TA+   +  +  + + + KM HSR +G +    + TV++WV+ F   + G+F I  R Y   +  SFID ED+ ERCRE ++RRL+ R+K +P  RV++F+R   T  L  +
Sbjct:    6 RLPSIMRTALAIRAYAVLEIEEGVNKMRHSRYVGDVVKTTAQTVRKWVKEF--CQDGKFLISKRLYEIRQADSFIDPEDIAERCREEIDRRLYRRKKTDPWFRVSDFQRWVNTVLLKEV 122

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BLAST of mRNA_H-fluviatilis_contig10362.727.1 vs. uniprot
Match: D7FZS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS4_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.470e-14
Identity = 43/103 (41.75%), Postives = 64/103 (62.14%), Query Frame = -1

Query:   74 TSILTAVCPFSQLLTRVSDRIKKMMHSRVMGAIFGVRSLTVQRWVQSFRIAEGGEFKIPDRAYAKHEPHSFIDDEDVTERCREWLNRRLHHRQKGEPRPRVAN 382
            T ++ AV  F QL   V D + KM HSR +  ++ V   TV+RWV+  ++ +GG   I  R Y K E H +IDDED+    RE+++RRL+ R++ EPR R+A+
Sbjct:   64 TRVVRAVKHFLQL--EVQDGVAKMEHSREVAKVYEVDPSTVRRWVK--KLCKGGSVVIRKRQYNKREAHPYIDDEDIRNGLREYIDRRLYRRKRDEPRLRIAD 162

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BLAST of mRNA_H-fluviatilis_contig10362.727.1 vs. uniprot
Match: A0A6H5JJM4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM4_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.640e-14
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = -1

Query:   74 MMHSRVMGAIFGVRSLTVQRWVQSFRIAEGGEFKIPDRAYAKHEPHSFIDDEDVTERCREWLNRRLHHRQKGEPRPRVAN 313
            M HSR  G +  V S TV+RWV+ F   +G  F +  R Y K EPHS+IDDED+  R RE+++RRL+ R+K EPR R+A+
Sbjct:    1 MEHSREAGKVADVDSRTVRRWVKEF--CKGDSFVVRKRQYNKREPHSYIDDEDIRGRLREYIDRRLYRRKKDEPRLRIAD 78

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BLAST of mRNA_H-fluviatilis_contig10362.727.1 vs. uniprot
Match: A0A6H5K600_9PHAE (R domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K600_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.790e-14
Identity = 44/109 (40.37%), Postives = 69/109 (63.30%), Query Frame = -1

Query:   65 RLTSIL-TAVCPFSQLLTRVSDRIKKMMHSRVMGAIFGVRSLTVQRWVQSFRIAEGGEFKIPDRAYAKHEPHSFIDDEDVTERCREWLNRRLHHRQKGEPRPRVANFRR 388
            RL SI+ TA+   +  +  + + + KM HSR +G +    + TV++WV+ F   + G+F I  R Y   +  SFID ED+ ERCRE ++RRL+ R+K +PR RV++F+R
Sbjct:  242 RLPSIMRTALAIRAYAVLEIEEGVNKMRHSRYVGDVVKTTAQTVRKWVKEF--CQDGKFLIRKRLYEISQADSFIDHEDIAERCREEIDRRLYRRKKTDPRFRVSDFQR 348

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BLAST of mRNA_H-fluviatilis_contig10362.727.1 vs. uniprot
Match: A0A6H5JL83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL83_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.970e-14
Identity = 44/109 (40.37%), Postives = 69/109 (63.30%), Query Frame = -1

Query:   65 RLTSIL-TAVCPFSQLLTRVSDRIKKMMHSRVMGAIFGVRSLTVQRWVQSFRIAEGGEFKIPDRAYAKHEPHSFIDDEDVTERCREWLNRRLHHRQKGEPRPRVANFRR 388
            RL SI+ TA+   +  +  + + + KM HSR +G +    + TV++WV+ F   + G+F I  R Y   +  SFID ED+ ERCRE ++RRL+ R+K +PR RV++F+R
Sbjct:  946 RLPSIMRTALAIRAYAVLEIEEGVNKMRHSRYVGDVVKTTAQTVRKWVKEF--CQDGKFLIRKRLYEISQADSFIDHEDIAERCREEIDRRLYRRKKTDPRFRVSDFQR 1052

The following BLAST results are available for this feature:

BLAST of mRNA_H-fluviatilis_contig10362.727.1 vs. uniprot

BLAST of mRNA_H-fluviatilis_contig10362.727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18


Match Name	E-value	Identity	Description
A0A6H5K527_9PHAE	1.530e-19	39.20	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDG4_9PHAE	1.560e-19	39.20	Uncharacterized protein n=6 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K659_9PHAE	2.060e-19	44.00	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K550_9PHAE	1.370e-16	46.60	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JJ42_9PHAE	7.920e-15	47.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L7Z5_9PHAE	1.130e-14	37.82	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FZS4_ECTSI	1.470e-14	41.75	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JJM4_9PHAE	2.640e-14	50.00	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K600_9PHAE	2.790e-14	40.37	R domain-containing protein n=1 Tax=Ectocarpus sp....	[more]
A0A6H5JL83_9PHAE	4.970e-14	40.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-fluviatilis_contig10362	contig	H-fluviatilis_contig10362:4436..4871 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_90	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	436
Cds size	375
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-fluviatilis_contig10362.727.1	prot_H-fluviatilis_contig10362.727.1	Heribaudiella fluviatilis SAG_13_90	polypeptide	H-fluviatilis_contig10362 4462..4836 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929088.1607482-UTR-H-fluviatilis_contig10362:4435..4461	1622929088.1607482-UTR-H-fluviatilis_contig10362:4435..4461	Heribaudiella fluviatilis SAG_13_90	UTR	H-fluviatilis_contig10362 4436..4461 +
1691135177.482613-UTR-H-fluviatilis_contig10362:4435..4461	1691135177.482613-UTR-H-fluviatilis_contig10362:4435..4461	Heribaudiella fluviatilis SAG_13_90	UTR	H-fluviatilis_contig10362 4436..4461 +
1622929088.1997516-UTR-H-fluviatilis_contig10362:4836..4871	1622929088.1997516-UTR-H-fluviatilis_contig10362:4836..4871	Heribaudiella fluviatilis SAG_13_90	UTR	H-fluviatilis_contig10362 4837..4871 +
1691135177.5000303-UTR-H-fluviatilis_contig10362:4836..4871	1691135177.5000303-UTR-H-fluviatilis_contig10362:4836..4871	Heribaudiella fluviatilis SAG_13_90	UTR	H-fluviatilis_contig10362 4837..4871 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929088.180195-CDS-H-fluviatilis_contig10362:4461..4836	1622929088.180195-CDS-H-fluviatilis_contig10362:4461..4836	Heribaudiella fluviatilis SAG_13_90	CDS	H-fluviatilis_contig10362 4462..4836 +
1691135177.4930756-CDS-H-fluviatilis_contig10362:4461..4836	1691135177.4930756-CDS-H-fluviatilis_contig10362:4461..4836	Heribaudiella fluviatilis SAG_13_90	CDS	H-fluviatilis_contig10362 4462..4836 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-fluviatilis_contig10362:4436..4871+
coding sequence from alignment at H-fluviatilis_contig10362:4436..4871+

protein sequence of mRNA_H-fluviatilis_contig10362.727.1

>prot_H-fluviatilis_contig10362.727.1 ID=prot_H-fluviatilis_contig10362.727.1|Name=mRNA_H-fluviatilis_contig10362.727.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=125bp
MSAIGVNEQVRANLRKFATRGRGSPFCRWCSRLLSHSLQRSVTSSSSMKL
CGSCLAYALSGILNSPPSAMRKDCTHLWTVSERTPKIAPITLLCIIFFIL
SETLVSNWEKGQTAVRIDVSRSGE*

mRNA from alignment at H-fluviatilis_contig10362:4436..4871+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-fluviatilis_contig10362.727.1 ID=mRNA_H-fluviatilis_contig10362.727.1|Name=mRNA_H-fluviatilis_contig10362.727.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=436bp|location=Sequence derived from alignment at H-fluviatilis_contig10362:4436..4871+ (Heribaudiella fluviatilis SAG_13_90)
CGTGAAGGCAAGAGTACCGGCAACGCATGAGTGCTATAGGCGTTAATGAA
CAGGTCAGGGCTAATCTTCGAAAGTTTGCGACTCGTGGACGCGGCTCGCC
CTTCTGCCGGTGGTGTAGCCGCCTGTTGAGCCATTCTCTGCAGCGCTCCG
TCACGTCTTCGTCGTCGATGAAGCTGTGCGGCTCATGCTTGGCGTACGCT
CTGTCGGGTATCTTGAATTCGCCGCCTTCGGCAATGCGGAAAGACTGTAC
CCACCTTTGGACAGTGAGCGAACGAACACCAAAAATCGCACCCATCACCC
TGCTGTGCATCATCTTTTTTATCCTGTCTGAAACCCTGGTGAGCAATTGG
GAGAAAGGACAAACGGCGGTGAGAATAGACGTCAGTCGTAGTGGAGAATA
ACGGAGTAGACAGAGGTCCACTCTCGTTGTGGCGAG

Coding sequence (CDS) from alignment at H-fluviatilis_contig10362:4436..4871+

>mRNA_H-fluviatilis_contig10362.727.1 ID=mRNA_H-fluviatilis_contig10362.727.1|Name=mRNA_H-fluviatilis_contig10362.727.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=750bp|location=Sequence derived from alignment at H-fluviatilis_contig10362:4436..4871+ (Heribaudiella fluviatilis SAG_13_90)
ATGAGTGCTATAGGCGTTAATGAACAGGTCAGGGCTAATCTTCGAAAGTT
TGCGACTCGTGGACGCGGCTCGCCCTTCTGCCGGTGGTGTAGCCGCCTGT
TGAGCCATTCTCTGCAGCGCTCCGTCACGTCTTCGTCGTCGATGAAGCTG
TGCGGCTCATGCTTGGCGTACGCTCTGTCGGGTATCTTGAATTCGCCGCC
TTCGGCAATGCGGAAAGACTGTACCCACCTTTGGACAGTGAGCGAACGAA
CACCAAAAATCGCACCCATCACCCTGCTGTGCATCATCTTTTTTATCCTG
TCTGAAACCCTGGTGAGCAATTGGGAGAAAGGACAAACGGCGGTGAGAAT
AGACGTCAGTCGTAGTGGAGAATAAATGAGTGCTATAGGCGTTAATGAAC
AGGTCAGGGCTAATCTTCGAAAGTTTGCGACTCGTGGACGCGGCTCGCCC
TTCTGCCGGTGGTGTAGCCGCCTGTTGAGCCATTCTCTGCAGCGCTCCGT
CACGTCTTCGTCGTCGATGAAGCTGTGCGGCTCATGCTTGGCGTACGCTC
TGTCGGGTATCTTGAATTCGCCGCCTTCGGCAATGCGGAAAGACTGTACC
CACCTTTGGACAGTGAGCGAACGAACACCAAAAATCGCACCCATCACCCT
GCTGTGCATCATCTTTTTTATCCTGTCTGAAACCCTGGTGAGCAATTGGG
AGAAAGGACAAACGGCGGTGAGAATAGACGTCAGTCGTAGTGGAGAATAA