mRNA_H-fluviatilis_contig10361.725.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10361.725.1
Unique NamemRNA_H-fluviatilis_contig10361.725.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig10361.725.1 vs. uniprot
Match: A0A6H5J9Q8_9PHAE (FAD_binding_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J9Q8_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 3.510e-57
Identity = 98/127 (77.17%), Postives = 110/127 (86.61%), Query Frame = 1
Query:    1 TGDGVRLGQAAGASLVDMDQIQVHPTSLVDPKDPTNLTKFLAPESMRGSGGILVDAGGRRFANELTTRAVLTEAVFKSGTPMPGDDDXXXXXXATVNGVAPTVAFLILNQEAADAFGTSVLGFYMSK 381
            TGDGVRLGQAAGASLVDMDQ+QVHPTSLVDPKDPTNL+KFLAPESMRGSGGILVDA G+RFANELTTR+VLT+A+F++G PMPG             G+APTVA+L+LN+EAA AFGT VLGFYMSK
Sbjct:  258 TGDGVRLGQAAGASLVDMDQVQVHPTSLVDPKDPTNLSKFLAPESMRGSGGILVDAEGKRFANELTTRSVLTDAIFEAGKPMPG---AKPEGGGEPEGIAPTVAYLLLNEEAAGAFGTGVLGFYMSK 381          
BLAST of mRNA_H-fluviatilis_contig10361.725.1 vs. uniprot
Match: A0A835YME9_9STRA (NADH-dependent fumarate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YME9_9STRA)

HSP 1 Score: 157 bits (396), Expect = 8.850e-43
Identity = 80/127 (62.99%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 TGDGVRLGQAAGASLVDMDQIQVHPTSLVDPKDPTNLTKFLAPESMRGSGGILVDAGGRRFANELTTRAVLTEAVFKSGTPMPGDDDXXXXXXATVNGVAPTVAFLILNQEAADAFGTSVLGFYMSK 381
            TGDGVRL +  GA+LVDMDQIQVHPT+LVDPKDPTNL+KFL PE+MRG GGILVD  G+RF NEL TR  +TEA+FK G P     D      A   GV PTVAFLI+N   A+ FG  +LGFY  K
Sbjct:  288 TGDGVRLAEDLGAALVDMDQIQVHPTALVDPKDPTNLSKFLGPETMRGEGGILVDGTGKRFTNELATRIAVTEAIFKHGRPATRAADGSAV--AAAGGVTPTVAFLIMNGAVAEKFGRGMLGFYKGK 412          
BLAST of mRNA_H-fluviatilis_contig10361.725.1 vs. uniprot
Match: A0A836CD50_9STRA (FAD binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD50_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.250e-42
Identity = 78/127 (61.42%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 TGDGVRLGQAAGASLVDMDQIQVHPTSLVDPKDPTNLTKFLAPESMRGSGGILVDAGGRRFANELTTRAVLTEAVFKSGTPMPGDDDXXXXXXATVNGVAPTVAFLILNQEAADAFGTSVLGFYMSK 381
            TGDG++L +A GA LVDMDQIQVHPT LVDPKDP NLTKFL PE+MRG GGILVD  GRRF NEL TRAV+T A+FK G     + D      A      PTVA+L++N   ADAFG  +LGFY  K
Sbjct:  210 TGDGIKLAEAVGAVLVDMDQIQVHPTGLVDPKDPANLTKFLGPETMRGEGGILVDGTGRRFVNELATRAVVTAAIFKHGALPQVEVDAAAMAPAADTKSLPTVAYLLMNSAVADAFGRGMLGFYRGK 336          
BLAST of mRNA_H-fluviatilis_contig10361.725.1 vs. uniprot
Match: A0A1Y1HUE9_KLENI (FAD_binding_2 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HUE9_KLENI)

HSP 1 Score: 127 bits (318), Expect = 9.070e-32
Identity = 65/125 (52.00%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    1 TGDGVRLGQAAGASLVDMDQIQVHPTSLVDPKDPTNLTKFLAPESMRGSGGILVDAGGRRFANELTTRAVLTEAVFKSGTPMPGDDDXXXXXXATVNGVAPTVAFLILNQEAADAFGTSVLGFYM 375
            TGDGV+LG A GA  VD+DQ+Q+HPT LVDPKDPTN TKFLAPE++R  GGIL++  G RF +EL+TR V+ +A+ +   P+    +      A    +AP  AFL+LN E+ + FG SV  FYM
Sbjct:  275 TGDGVKLGLAIGAGSVDLDQVQLHPTGLVDPKDPTNPTKFLAPEALRAIGGILLNQKGERFVDELSTRDVVAQAILEHCQPL--QLEGATKRAAEEATLAPVTAFLVLNDESVERFGRSVAEFYM 397          
BLAST of mRNA_H-fluviatilis_contig10361.725.1 vs. uniprot
Match: A0A7S3UR58_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UR58_HETAK)

HSP 1 Score: 122 bits (307), Expect = 1.760e-31
Identity = 64/131 (48.85%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    1 TGDGVRLGQAAGASLVDMDQIQVHPTSLVDPKDPTNLTKFLAPESMRGSGGILVDAGGRRFANELTTRAVLTEAVFKSGTPM-------PGDDDXXXXXXATVNGVAPTVAFLILNQEAADAFGTSVLGFY 372
            +G+GVRLG+  GA LVDMDQ+QVHPT LV P DPTN  KFLAPE+MRG GGIL++  GRRF NEL  R  +T  +     P        PG  D         +   PT A+L++N   ++ FG +VLGFY
Sbjct:   95 SGEGVRLGRTIGADLVDMDQVQVHPTGLVKPSDPTNPVKFLAPEAMRGCGGILLNQHGRRFCNELGRRDFVTGEILSHCAPFHVLPPAPPGGGDAMDEKEQEESVTGPTSAYLVMNPTVSNDFGAAVLGFY 225          
BLAST of mRNA_H-fluviatilis_contig10361.725.1 vs. uniprot
Match: A0A1X2IXF9_9FUNG (Fumarate reductase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IXF9_9FUNG)

HSP 1 Score: 122 bits (306), Expect = 2.890e-30
Identity = 66/126 (52.38%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    4 GDGVRLGQAAGASLVDMDQIQVHPTSLVDPKDPTNLTKFLAPESMRGSGGILVDAGGRRFANELTTRAVLTEAVFKSGTPMPGDDDXXXXXXATVNGVAPTVAFLILNQEAADAFGTSVLGFYMSK 381
            GDGVRLG A GA+ +DMDQ+Q+HPT  VDP DP  +TKFLAPE++R  GGIL++A G+RF NELTTR  LT+A+    T   G            NG  P V +L+L+++AA  FG S LGFY  K
Sbjct:  238 GDGVRLGLALGAATIDMDQVQIHPTGFVDPSDPDAMTKFLAPEALRAYGGILLNAQGQRFVNELTTRDKLTQAILAQ-THNDG------------NG-GPVVIYLVLSEQAAKDFGASTLGFYAKK 349          
BLAST of mRNA_H-fluviatilis_contig10361.725.1 vs. uniprot
Match: A0A2R5GRK2_9STRA (NADH-cytochrome b5 reductase-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRK2_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.380e-30
Identity = 64/127 (50.39%), Postives = 85/127 (66.93%), Query Frame = 1
Query:    1 TGDGVRLGQAAGASLVDMDQIQVHPTSLVDPKDPTNLTKFLAPESMRGSGGILVDAGGRRFANELTTRAVLTEAVFKSGTPMPGDDDXXXXXXATVNGVAPTVAFLILNQEAADAFGTSVLGFYMSK 381
            TGDGVR+G A GA+L+DMD++Q+HPT  +DPKDP N TKFLAPE++RGSGGILV++ GRRF +EL  R+V+  A+ K+  P    D            V    A++IL+QEA + FG   LGFY  +
Sbjct:  683 TGDGVRMGVALGANLIDMDKVQLHPTGFIDPKDPGNPTKFLAPEAIRGSGGILVNSQGRRFVDELNLRSVVAAAIQKNCDPYRDGDF-----------VGLPFAWVILSQEAQELFGPPTLGFYKDR 798          
BLAST of mRNA_H-fluviatilis_contig10361.725.1 vs. uniprot
Match: A0A0S4IZL1_BODSA (NADH-dependent fumarate reductase, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4IZL1_BODSA)

HSP 1 Score: 122 bits (305), Expect = 1.170e-29
Identity = 63/127 (49.61%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    1 TGDGVRLGQAAGASLVDMDQIQVHPTSLVDPKDPTNLTKFLAPESMRGSGGILVDAGGRRFANELTTRAVLTEAVFKSGTPMPGDDDXXXXXXATVNGVAPTVAFLILNQEAADAFGTSVLGFYMSK 381
            TGDGV++ ++ GA L+DMD++Q+HPT  VDPKDP N TKFL PE++RGSGGIL++A G RF NEL  R+V++ A+ +  T  P             NG    VAF +LN EAA  FG + L FY  K
Sbjct:  677 TGDGVKMARSIGAQLIDMDKVQLHPTGFVDPKDPANPTKFLGPEALRGSGGILINAFGERFVNELDLRSVVSAAINEQNTEYPNS-----------NGCK--VAFCVLNAEAAKLFGINALQFYWKK 790          
BLAST of mRNA_H-fluviatilis_contig10361.725.1 vs. uniprot
Match: A0A836K830_9TRYP (FAD_binding_2 domain-containing protein n=1 Tax=Leishmania martiniquensis TaxID=1580590 RepID=A0A836K830_9TRYP)

HSP 1 Score: 121 bits (303), Expect = 1.710e-29
Identity = 58/127 (45.67%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    1 TGDGVRLGQAAGASLVDMDQIQVHPTSLVDPKDPTNLTKFLAPESMRGSGGILVDAGGRRFANELTTRAVLTEAVFKSGTPMPGDDDXXXXXXATVNGVAPTVAFLILNQEAADAFGTSVLGFYMSK 381
            TGDGV++ +  G +LVDMD++Q+HPT L+DPKDP+N TK+L PE++RGSGG+L++  G RF NEL  R+V+++A+       PG                   A+ +LN+ AADAFG S L FY  K
Sbjct:  380 TGDGVKIARELGVALVDMDKVQLHPTGLLDPKDPSNRTKYLGPEALRGSGGVLLNKNGERFVNELDLRSVVSQAIIAQNNVYPGSG-------------GSKFAYCVLNEAAADAFGRSSLNFYWKK 493          
BLAST of mRNA_H-fluviatilis_contig10361.725.1 vs. uniprot
Match: A0A3R7KWL4_9TRYP (NADH-dependent fumarate reductase-like protein n=1 Tax=Trypanosoma conorhini TaxID=83891 RepID=A0A3R7KWL4_9TRYP)

HSP 1 Score: 120 bits (301), Expect = 4.040e-29
Identity = 58/124 (46.77%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 TGDGVRLGQAAGASLVDMDQIQVHPTSLVDPKDPTNLTKFLAPESMRGSGGILVDAGGRRFANELTTRAVLTEAVFKSGTPMPGDDDXXXXXXATVNGVAPTVAFLILNQEAADAFGTSVLGFY 372
            TGDGV+L +  GA+LVDMD++Q+HPT L+DPKDP + TKFL PE++RGSGG+L++  G RF NEL  R+V+++A+   G   PG +               T AF +LN  A   FG + L FY
Sbjct:  704 TGDGVKLARRLGATLVDMDKVQLHPTGLIDPKDPASATKFLGPEALRGSGGVLLNKRGERFVNELELRSVVSKAIMDQGDEYPGSN-------------GSTFAFCVLNDAAVKLFGVNALNFY 814          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10361.725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9Q8_9PHAE3.510e-5777.17FAD_binding_2 domain-containing protein n=2 Tax=Ec... [more]
A0A835YME9_9STRA8.850e-4362.99NADH-dependent fumarate reductase n=1 Tax=Tribonem... [more]
A0A836CD50_9STRA4.250e-4261.42FAD binding domain-containing protein n=1 Tax=Trib... [more]
A0A1Y1HUE9_KLENI9.070e-3252.00FAD_binding_2 domain-containing protein n=1 Tax=Kl... [more]
A0A7S3UR58_HETAK1.760e-3148.85Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1X2IXF9_9FUNG2.890e-3052.38Fumarate reductase n=1 Tax=Absidia repens TaxID=90... [more]
A0A2R5GRK2_9STRA3.380e-3050.39NADH-cytochrome b5 reductase-like protein n=1 Tax=... [more]
A0A0S4IZL1_BODSA1.170e-2949.61NADH-dependent fumarate reductase, putative n=1 Ta... [more]
A0A836K830_9TRYP1.710e-2945.67FAD_binding_2 domain-containing protein n=1 Tax=Le... [more]
A0A3R7KWL4_9TRYP4.040e-2946.77NADH-dependent fumarate reductase-like protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10361contigH-fluviatilis_contig10361:12..1077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.7
Seed ortholog evalue5.1e-47
Seed eggNOG ortholog2880.D7FSV9
KEGG koko:K14402,ko:K15146
KEGG Pathwayko03015,ko04919,map03015,map04919
EggNOG free text desc.fumarate reductase (NADH) activity
EggNOG OGsCOG1053@1,KOG2404@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADH-dependent fumarate reductase
Ec32 orthologEc-27_006560.1
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929088.0164635-CDS-H-fluviatilis_contig10361:11..3261622929088.0164635-CDS-H-fluviatilis_contig10361:11..326Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10361 12..326 -
1691135177.4495614-CDS-H-fluviatilis_contig10361:11..3261691135177.4495614-CDS-H-fluviatilis_contig10361:11..326Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10361 12..326 -
1622929088.0414796-CDS-H-fluviatilis_contig10361:1011..10771622929088.0414796-CDS-H-fluviatilis_contig10361:1011..1077Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10361 1012..1077 -
1691135177.4669323-CDS-H-fluviatilis_contig10361:1011..10771691135177.4669323-CDS-H-fluviatilis_contig10361:1011..1077Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10361 1012..1077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10361.725.1prot_H-fluviatilis_contig10361.725.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10361 12..1077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10361.725.1

>prot_H-fluviatilis_contig10361.725.1 ID=prot_H-fluviatilis_contig10361.725.1|Name=mRNA_H-fluviatilis_contig10361.725.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=127bp
TGDGVRLGQAAGASLVDMDQIQVHPTSLVDPKDPTNLTKFLAPESMRGSG
GILVDAGGRRFANELTTRAVLTEAVFKSGTPMPGDDDGGDDDGATVNGVA
PTVAFLILNQEAADAFGTSVLGFYMSK
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mRNA from alignment at H-fluviatilis_contig10361:12..1077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10361.725.1 ID=mRNA_H-fluviatilis_contig10361.725.1|Name=mRNA_H-fluviatilis_contig10361.725.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=1066bp|location=Sequence derived from alignment at H-fluviatilis_contig10361:12..1077- (Heribaudiella fluviatilis SAG_13_90)
ACCGGAGATGGTGTGCGCCTGGGTCAGGCGGCCGGCGCGTCCCTCGTTGA CATGGACCAAATTCAGGTGTGAGTGGGTGGTGGCGGTAGTCCAAGACACG AGGGGGGGGGGGAGGGGGGGGGGCATCGAGATCGGAAGGGCGTCGGGTGG GGNNNNNNNNNNGTAGTGGGGGGGGGTGGGGGGGGTGGGGGGGGGGGGGG GTGGAGGGCGGAGGGGGGGGGGGGGGGGGGAGGGGGGGGGTCATCGTATC CATTGAGAGTCGGTGTTCGTTTCTCGTACTTTGGGGAGGGAGGAGGAAAC AATCGAGAACCGTTCAGCTTTTTAAACAAGTCAATATAATATGTCCTAGT GTCGGCCAAAGGTTTACTTGCGTAGCGAAAACGTGTCGTGTCTACAGTAC GAGATCCCCCCGTGTTTGTTTCGATCGTCGTGTGCAAGTGTTGGAGAAGC TCCTAGATTTTCCGCCAGATGCCGTATCAGTACTCTCCCCCTCCCCTCTG TGTAGTGTCGGAAGCACAAACGTAGTATTTTTCTCGTTCTTCGCGCTTTT GTTTTCGTAGGCCATGGCTCGGAGAGACCGGTCCGACGACCAAATGCGGG CTGACCTGAGACGATGTCCTCGGTCAACCTGCGTCGGCAATCGAAGTCAT GGGTCACTTGTACGGTATTTGTCACCGGTACAGTTCTTGCCCCCCCCCCC CCTCCCCCCTCCGCGCGCACACCACGTACCACCTCCTTTAAAACCCTCAA GGTACATCCCACCTCGCTAGTAGATCCAAAAGACCCGACAAACCTCACCA AATTCCTGGCTCCGGAAAGCATGCGAGGGTCCGGTGGGATCCTGGTCGAC GCTGGCGGACGACGGTTTGCGAACGAGCTCACGACGAGAGCGGTCCTAAC CGAAGCGGTGTTTAAGTCGGGCACGCCCATGCCAGGAGATGATGATGGTG GCGATGATGACGGGGCAACAGTTAACGGAGTTGCACCGACGGTGGCCTTC TTGATCTTGAATCAGGAGGCCGCGGATGCGTTTGGAACGAGTGTGCTTGG ATTTTACATGAGTAAG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10361:12..1077-

>mRNA_H-fluviatilis_contig10361.725.1 ID=mRNA_H-fluviatilis_contig10361.725.1|Name=mRNA_H-fluviatilis_contig10361.725.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=762bp|location=Sequence derived from alignment at H-fluviatilis_contig10361:12..1077- (Heribaudiella fluviatilis SAG_13_90)
ACCGGAGATGGTGTGCGCCTGGGTCAGGCGGCCGGCGCGTCCCTCGTTGA
CATGGACCAAATTCAGACCGGAGATGGTGTGCGCCTGGGTCAGGCGGCCG
GCGCGTCCCTCGTTGACATGGACCAAATTCAGGTACATCCCACCTCGCTA
GTAGATCCAAAAGACCCGACAAACCTCACCAAATTCCTGGCTCCGGAAAG
CATGCGAGGGTCCGGTGGGATCCTGGTCGACGCTGGCGGACGACGGTTTG
CGAACGAGCTCACGACGAGAGCGGTCCTAACCGAAGCGGTGTTTAAGTCG
GGCACGCCCATGCCAGGAGATGATGATGGTGGCGATGATGACGGGGCAAC
AGTTAACGGAGTTGCACCGACGGTGGCCTTCTTGATCTTGAATCAGGAGG
CCGCGGATGCGTTTGGAACGAGTGTGCTTGGATTTTACATGAGTAAGGTA
CATCCCACCTCGCTAGTAGATCCAAAAGACCCGACAAACCTCACCAAATT
CCTGGCTCCGGAAAGCATGCGAGGGTCCGGTGGGATCCTGGTCGACGCTG
GCGGACGACGGTTTGCGAACGAGCTCACGACGAGAGCGGTCCTAACCGAA
GCGGTGTTTAAGTCGGGCACGCCCATGCCAGGAGATGATGATGGTGGCGA
TGATGACGGGGCAACAGTTAACGGAGTTGCACCGACGGTGGCCTTCTTGA
TCTTGAATCAGGAGGCCGCGGATGCGTTTGGAACGAGTGTGCTTGGATTT
TACATGAGTAAG
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