mRNA_H-fluviatilis_contig103603.724.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103603.724.1
Unique NamemRNA_H-fluviatilis_contig103603.724.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig103603.724.1 vs. uniprot
Match: A0A2E0QY89_9BACT (Mannonate dehydratase n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E0QY89_9BACT)

HSP 1 Score: 134 bits (336), Expect = 4.710e-36
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 TPQTDQNFRLMAQAGATDVVAYYPGTDLSQLLSLKKQANSMNLNLSVIERYLPHSDVVHNTPGRDKQIQDIQTLIRNMGKAGVRVLCYNWMPVNDWSRTKLDVKERGGSLVS 336
            TP +D+N +L AQ G +++V+ YPG +L  L  ++K+  S  + L VIERY+P  + +H T  RD+QI+D +TLIRNMG+A V VLCY+WMP +DW RT LD KERGG+LVS
Sbjct:    8 TPFSDENLQLAAQIGVSEIVSIYPGLELENLQQIRKRVESFGMKLGVIERYVPTLEFIHATEKRDQQIEDFKTLIRNMGEAEVPVLCYSWMPNDDWQRTSLDAKERGGALVS 119          
BLAST of mRNA_H-fluviatilis_contig103603.724.1 vs. uniprot
Match: A0A2N3HHQ7_9FLAO (Mannonate dehydratase n=1 Tax=Confluentibacter flavum TaxID=1909700 RepID=A0A2N3HHQ7_9FLAO)

HSP 1 Score: 128 bits (321), Expect = 8.160e-34
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 TPQTDQNFRLMAQAGATDVVAYYPGTDLSQLLSLKKQANSMNLNLSVIERYLPHSDVVHNTPGRDKQIQDIQTLIRNMGKAGVRVLCYNWMPVNDWSRTKLDVKERGGSLVS 336
            TP +  N +L++Q GATD++  YPG +L++LL  +KQ     + +S IER +P    VHN  G D+QI+  +TL+RNMGKAGV+ LCY+WMP +DW RT L+V ERGG+L +
Sbjct:    8 TPMSHHNLKLVSQVGATDIIISYPGLNLNELLKRQKQVQKYGMTISCIERLIPTLKFVHNLEGADEQIEGFKTLLRNMGKAGVKTLCYSWMPDDDWQRTSLNVVERGGALTT 119          
BLAST of mRNA_H-fluviatilis_contig103603.724.1 vs. uniprot
Match: A0A2D5Z039_9PLAN (Mannonate dehydratase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5Z039_9PLAN)

HSP 1 Score: 127 bits (320), Expect = 1.560e-33
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 TPQTDQNFRLMAQAGATDVVAYYPGTDLSQLLSLKKQANSMNLNLSVIERYLPHSDVVHNTPGRDKQIQDIQTLIRNMGKAGVRVLCYNWMPVNDWSRTKLDVKERGGSLVS 336
            TP +D N +L  Q G TD+V  +PG  L  L++L+ +    +L LSVIE Y+PH  +VH   GRD+QI+   TL+RNMG+AGV + CYN+MP +DWSRT +D  ERGG+LV+
Sbjct:    8 TPPSDHNLQLARQIGVTDIVGRFPGLQLESLIALRDRIARFDLRLSVIEGYIPHEKIVHGLDGRDQQIEHFNTLLRNMGRAGVPICCYNFMPDDDWSRTGVDTLERGGALVT 119          
BLAST of mRNA_H-fluviatilis_contig103603.724.1 vs. uniprot
Match: A0A2E7HNQ1_9BACT (Mannonate dehydratase n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2E7HNQ1_9BACT)

HSP 1 Score: 125 bits (313), Expect = 1.230e-32
Identity = 56/111 (50.45%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    4 PQTDQNFRLMAQAGATDVVAYYPGTDLSQLLSLKKQANSMNLNLSVIERYLPHSDVVHNTPGRDKQIQDIQTLIRNMGKAGVRVLCYNWMPVNDWSRTKLDVKERGGSLVS 336
            P T++N +L AQ G  +VV  +PG D + L  L ++  +  + LSVIER LPH  +VHN  G+D QI+DI+TL+RNM + G++VLCYNWMP  DW RT  D+ ERGG+ V+
Sbjct:    9 PFTERNLQLAAQVGVEEVVVPFPGLDPNALPKLARRVEAFGMRLSVIERKLPHLKIVHNLEGQDAQIEDIKTLLRNMAEVGMKVLCYNWMPDEDWQRTSKDIPERGGAKVT 119          
BLAST of mRNA_H-fluviatilis_contig103603.724.1 vs. uniprot
Match: A0A2D8VGB4_9BACT (Mannonate dehydratase n=3 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2D8VGB4_9BACT)

HSP 1 Score: 120 bits (301), Expect = 7.370e-31
Identity = 56/111 (50.45%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    4 PQTDQNFRLMAQAGATDVVAYYPGTDLSQLLSLKKQANSMNLNLSVIERYLPHSDVVHNTPGRDKQIQDIQTLIRNMGKAGVRVLCYNWMPVNDWSRTKLDVKERGGSLVS 336
            P T++N +L AQ G   VV  YPG D   L  L K   +  + LSVI R LPH  +VH   GRD QI+D++TL+RNM + G+ VLCYNWMP  DW RT  D  ERGG+ V+
Sbjct:    9 PFTERNLQLAAQVGVEQVVVPYPGLDPDALPDLVKMVEAFGMRLSVIXRKLPHLKIVHGLEGRDAQIEDVKTLLRNMAEVGMEVLCYNWMPDEDWQRTSKDAPERGGAKVT 119          
BLAST of mRNA_H-fluviatilis_contig103603.724.1 vs. uniprot
Match: A0A382USG9_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382USG9_9ZZZZ)

HSP 1 Score: 119 bits (297), Expect = 7.740e-31
Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = 1
Query:    4 PQTDQNFRLMAQAGATDVVAYYPGTDLSQLLSLKKQANSMNLNLSVIERYLPHSDVVHNTPGRDKQIQDIQTLIRNMGKAGVRVLCYNWMPVNDWSRTKLDVKERGGSLVS 336
            P  D+N +L AQ G +++V  YPG DL  LL  K++  S  + L+ IER +PH  +VH  PG ++Q+Q  +TL+RNM +A +++LCYNWMP  DW RT  + +ERGG+LV+
Sbjct:    9 PFNDRNLQLAAQVGVSEMVIPYPGEDLKALLETKRRVESFGMRLTHIERKVPHLKLVHRLPGWEEQLQVFKTLLRNMAEAEMKILCYNWMPDEDWQRTSCETQERGGALVT 119          
BLAST of mRNA_H-fluviatilis_contig103603.724.1 vs. uniprot
Match: A0A3L7NKC4_9BACT (Mannonate dehydratase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7NKC4_9BACT)

HSP 1 Score: 117 bits (292), Expect = 1.410e-29
Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    4 PQTDQNFRLMAQAGATDVVAYYPGTDLSQLLSLKKQANSMNLNLSVIERYLPHSDVVHNTPGRDKQIQDIQTLIRNMGKAGVRVLCYNWMPVNDWSRTKLDVKERGGSLVS 336
            P TD + +  AQ G +D+V  YPG D   LL+ K++  S  + L+ IER +PH   VHN PGRD QI D ++L+  M  AG+ VLCYNWMP  DW RT   V++RGGSLV+
Sbjct:    9 PPTDLHLQWAAQIGVSDIVIPYPGLDRVGLLATKRRVESFGMKLTHIERKVPHLQFVHNLPGRDAQIADFKSLLCIMADAGMEVLCYNWMPDEDWQRTSSHVRQRGGSLVT 119          
BLAST of mRNA_H-fluviatilis_contig103603.724.1 vs. uniprot
Match: A0A520M7Z8_9BACT (Mannonate dehydratase n=2 Tax=Verrucomicrobiales TaxID=48461 RepID=A0A520M7Z8_9BACT)

HSP 1 Score: 116 bits (290), Expect = 2.780e-29
Identity = 52/112 (46.43%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    1 TPQTDQNFRLMAQAGATDVVAYYPGTDLSQLLSLKKQANSMNLNLSVIERYLPHSDVVHNTPGRDKQIQDIQTLIRNMGKAGVRVLCYNWMPVNDWSRTKLDVKERGGSLVS 336
            TP +++N +L AQ G  ++V  YPG +   L+  K+  +S  + L+ IER LPH  +VHN  GRD Q++ I++LIR MG+ G+ VLCYNWMP  DW RT     ERGGS  +
Sbjct:    8 TPFSEENLQLAAQIGVEEIVLVYPGPEKDSLIKAKRMVDSFGMRLTHIERKLPHDQIVHNLSGRDGQVEKIKSLIREMGELGLEVLCYNWMPSEDWCRTTKLNPERGGSYTT 119          
BLAST of mRNA_H-fluviatilis_contig103603.724.1 vs. uniprot
Match: A0A2D8Z3H4_9BACT (Mannonate dehydratase n=3 Tax=Verrucomicrobiales TaxID=48461 RepID=A0A2D8Z3H4_9BACT)

HSP 1 Score: 116 bits (290), Expect = 3.470e-29
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 TPQTDQNFRLMAQAGATDVVAYYPGTDLSQLLSLKKQANSMNLNLSVIERYLPHSDVVHNTPGRDKQIQDIQTLIRNMGKAGVRVLCYNWMPVNDWSRTKLDVKERGGSLVS 336
            TP  D+N  L AQ G  ++V+ +PG +   L SLK++ +S  + L+ IER +PH  +VH   GRD QI     LI+ MG  G++VLCYNWMP  DW RT  D+ ERGGSL +
Sbjct:   19 TPICDKNLELAAQVGVEEIVSIFPGLEEGVLKSLKQKVDSFGMRLTHIERKIPHDQIVHGLSGRDDQINTFIELIKQMGGLGLKVLCYNWMPSEDWCRTSKDIPERGGSLCT 130          
BLAST of mRNA_H-fluviatilis_contig103603.724.1 vs. uniprot
Match: A0A2E9ERZ3_9BACT (Mannonate dehydratase (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E9ERZ3_9BACT)

HSP 1 Score: 111 bits (278), Expect = 4.580e-29
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 TPQTDQNFRLMAQAGATDVVAYYPGTDLSQLLSLKKQANSMNLNLSVIERYLPHSDVVHNTPGRDKQIQDIQTLIRNMGKAGVRVLCYNWMPVNDWSRTKLDVKERGGSLVS 336
            TP  D+N  L AQ G  ++V+ + G +   L SL+++ +S  + L+ IER +PH  +VH   GRD QI     LI+ MG  G++VLCYNWMP  DW RT  D+ ERGGSL +
Sbjct:   19 TPICDKNLELAAQVGVEEIVSIFRGLEEGVLKSLRQKVDSFGMRLTHIERKIPHDQIVHGLSGRDDQINTFIELIKQMGGLGLKVLCYNWMPSEDWCRTSKDIPERGGSLCT 130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103603.724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E0QY89_9BACT4.710e-3653.57Mannonate dehydratase n=1 Tax=Verrucomicrobiales b... [more]
A0A2N3HHQ7_9FLAO8.160e-3450.00Mannonate dehydratase n=1 Tax=Confluentibacter fla... [more]
A0A2D5Z039_9PLAN1.560e-3350.89Mannonate dehydratase n=1 Tax=Planctomycetaceae ba... [more]
A0A2E7HNQ1_9BACT1.230e-3250.45Mannonate dehydratase n=1 Tax=Opitutae bacterium T... [more]
A0A2D8VGB4_9BACT7.370e-3150.45Mannonate dehydratase n=3 Tax=Opitutae bacterium T... [more]
A0A382USG9_9ZZZZ7.740e-3146.85Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A3L7NKC4_9BACT1.410e-2949.55Mannonate dehydratase n=1 Tax=Planctomycetes bacte... [more]
A0A520M7Z8_9BACT2.780e-2946.43Mannonate dehydratase n=2 Tax=Verrucomicrobiales T... [more]
A0A2D8Z3H4_9BACT3.470e-2947.32Mannonate dehydratase n=3 Tax=Verrucomicrobiales T... [more]
A0A2E9ERZ3_9BACT4.580e-2945.54Mannonate dehydratase (Fragment) n=1 Tax=Verrucomi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103603contigH-fluviatilis_contig103603:261..750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.6
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog344747.PM8797T_18736
Preferred nameuxuA
KEGG rclassRC00543
KEGG koko:K01686
KEGG ReactionR05606
KEGG Pathwayko00040,ko01100,map00040,map01100
KEGG ModuleM00061
EggNOG free text desc.D-mannonate dehydratase (UxuA)
EggNOG OGs2IXAA@203682,COG1312@1,COG1312@2
EC4.2.1.8
COG Functional cat.G
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size336
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103603.724.1prot_H-fluviatilis_contig103603.724.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103603 291..750 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929087.8764634-UTR-H-fluviatilis_contig103603:260..2901622929087.8764634-UTR-H-fluviatilis_contig103603:260..290Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig103603 261..290 +
1691135177.3785226-UTR-H-fluviatilis_contig103603:260..2901691135177.3785226-UTR-H-fluviatilis_contig103603:260..290Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig103603 261..290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929087.9014888-CDS-H-fluviatilis_contig103603:290..2991622929087.9014888-CDS-H-fluviatilis_contig103603:290..299Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103603 291..299 +
1691135177.394897-CDS-H-fluviatilis_contig103603:290..2991691135177.394897-CDS-H-fluviatilis_contig103603:290..299Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103603 291..299 +
1622929087.9144106-CDS-H-fluviatilis_contig103603:350..4171622929087.9144106-CDS-H-fluviatilis_contig103603:350..417Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103603 351..417 +
1691135177.404511-CDS-H-fluviatilis_contig103603:350..4171691135177.404511-CDS-H-fluviatilis_contig103603:350..417Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103603 351..417 +
1622929087.9312246-CDS-H-fluviatilis_contig103603:448..5301622929087.9312246-CDS-H-fluviatilis_contig103603:448..530Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103603 449..530 +
1691135177.4148257-CDS-H-fluviatilis_contig103603:448..5301691135177.4148257-CDS-H-fluviatilis_contig103603:448..530Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103603 449..530 +
1622929087.946953-CDS-H-fluviatilis_contig103603:573..6311622929087.946953-CDS-H-fluviatilis_contig103603:573..631Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103603 574..631 +
1691135177.4250858-CDS-H-fluviatilis_contig103603:573..6311691135177.4250858-CDS-H-fluviatilis_contig103603:573..631Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103603 574..631 +
1622929087.9623172-CDS-H-fluviatilis_contig103603:660..7501622929087.9623172-CDS-H-fluviatilis_contig103603:660..750Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103603 661..750 +
1691135177.4357386-CDS-H-fluviatilis_contig103603:660..7501691135177.4357386-CDS-H-fluviatilis_contig103603:660..750Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103603 661..750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103603.724.1

>prot_H-fluviatilis_contig103603.724.1 ID=prot_H-fluviatilis_contig103603.724.1|Name=mRNA_H-fluviatilis_contig103603.724.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=102bp
MAQAGATDVVAYYPGTDLSQLLSLKKQANSMNLNLSVIERYLPHSDVVHN
TPGRDKQIQDIQTLIRNMGKAGVRVLCYNWMPVNDWSRTKLDVKERGGSL
VS
back to top

mRNA from alignment at H-fluviatilis_contig103603:261..750+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103603.724.1 ID=mRNA_H-fluviatilis_contig103603.724.1|Name=mRNA_H-fluviatilis_contig103603.724.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=490bp|location=Sequence derived from alignment at H-fluviatilis_contig103603:261..750+ (Heribaudiella fluviatilis SAG_13_90)
ACCCCACAAACGGACCAAAACTTTCGTTTGATGGCTCAGGTAGTTGTGTG GAGCGTGGATCTATTGAACTCTCATCTTTCTGTATTGCAGGCTGGCGCCA CCGATGTGGTAGCGTACTATCCAGGGACCGATCTCTCGCAGCTGTTATCA CTCAAGAGTACGTGGGATCCGTTTTCAGCTCAATGTAGAGCAAGCGAACT CGATGAATCTGAATCTGTCTGTGATTGAGCGGTACTTGCCGCACAGCGAC GTGGTGCACAACACCCCCGGGTAGGGATAAATGATATGGCCTCACTGAAC ACCTTGAACAAAGGCGGGACAAGCAGATTCAAGACATTCAGACTTTGATT CGCAACATGGGCAAAGCTGGGGTAAGCTCACACGCGCTGTTACTACACAG GTGCGCGTGCTGTGCTACAATTGGATGCCAGTCAACGATTGGAGTCGCAC CAAATTGGATGTGAAAGAACGCGGCGGTTCTTTGGTGAGT
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig103603:261..750+

>mRNA_H-fluviatilis_contig103603.724.1 ID=mRNA_H-fluviatilis_contig103603.724.1|Name=mRNA_H-fluviatilis_contig103603.724.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=612bp|location=Sequence derived from alignment at H-fluviatilis_contig103603:261..750+ (Heribaudiella fluviatilis SAG_13_90)
ATGGCTCAGATGGCTCAGGCTGGCGCCACCGATGTGGTAGCGTACTATCC
AGGGACCGATCTCTCGCAGCTGTTATCACTCAAGAGCTGGCGCCACCGAT
GTGGTAGCGTACTATCCAGGGACCGATCTCTCGCAGCTGTTATCACTCAA
GAAGCAAGCGAACTCGATGAATCTGAATCTGTCTGTGATTGAGCGGTACT
TGCCGCACAGCGACGTGGTGCACAACACCCCCGGAGCAAGCGAACTCGAT
GAATCTGAATCTGTCTGTGATTGAGCGGTACTTGCCGCACAGCGACGTGG
TGCACAACACCCCCGGGCGGGACAAGCAGATTCAAGACATTCAGACTTTG
ATTCGCAACATGGGCAAAGCTGGGGCGGGACAAGCAGATTCAAGACATTC
AGACTTTGATTCGCAACATGGGCAAAGCTGGGGTGCGCGTGCTGTGCTAC
AATTGGATGCCAGTCAACGATTGGAGTCGCACCAAATTGGATGTGAAAGA
ACGCGGCGGTTCTTTGGTGAGTGTGCGCGTGCTGTGCTACAATTGGATGC
CAGTCAACGATTGGAGTCGCACCAAATTGGATGTGAAAGAACGCGGCGGT
TCTTTGGTGAGT
back to top