mRNA_H-fluviatilis_contig103568.717.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103568.717.1
Unique NamemRNA_H-fluviatilis_contig103568.717.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103568.717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103568contigH-fluviatilis_contig103568:2..311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size254
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103568.717.1prot_H-fluviatilis_contig103568.717.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103568 2..309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929087.013381-CDS-H-fluviatilis_contig103568:1..1151622929087.013381-CDS-H-fluviatilis_contig103568:1..115Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103568 2..115 +
1691135176.950772-CDS-H-fluviatilis_contig103568:1..1151691135176.950772-CDS-H-fluviatilis_contig103568:1..115Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103568 2..115 +
1622929087.0333052-CDS-H-fluviatilis_contig103568:142..2441622929087.0333052-CDS-H-fluviatilis_contig103568:142..244Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103568 143..244 +
1691135176.9584615-CDS-H-fluviatilis_contig103568:142..2441691135176.9584615-CDS-H-fluviatilis_contig103568:142..244Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103568 143..244 +
1622929087.0504017-CDS-H-fluviatilis_contig103568:273..3091622929087.0504017-CDS-H-fluviatilis_contig103568:273..309Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103568 274..309 +
1691135176.9658735-CDS-H-fluviatilis_contig103568:273..3091691135176.9658735-CDS-H-fluviatilis_contig103568:273..309Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103568 274..309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103568.717.1

>prot_H-fluviatilis_contig103568.717.1 ID=prot_H-fluviatilis_contig103568.717.1|Name=mRNA_H-fluviatilis_contig103568.717.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=84bp
EKENLLQTPFKRSELITTRTPDPHRRPFSVRQDNSNTMGFPIEQEYLDVE
ACKRLIQNARTQLLSTASPFRKEADNSDADRTYL
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mRNA from alignment at H-fluviatilis_contig103568:2..311+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103568.717.1 ID=mRNA_H-fluviatilis_contig103568.717.1|Name=mRNA_H-fluviatilis_contig103568.717.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=310bp|location=Sequence derived from alignment at H-fluviatilis_contig103568:2..311+ (Heribaudiella fluviatilis SAG_13_90)
GAGAAAGAGAATTTGTTGCAAACCCCATTCAAACGGTCTGAGTTGATCAC
GACACGAACGCCTGACCCACACCGACGTCCGTTCAGCGTTCGCCAGGACA
ATTCAAACACCATGGTAGAATGCCACTGCTAATACTCCCAGGGATTTCCT
ATAGAGCAAGAATACTTGGATGTTGAGGCTTGTAAGAGGCTAATTCAGAA
TGCCCGTACACAACTCCTCAGCACGGCTTCCCCATTCCGGAAGGTACTTT
GCAGTCTGGCAACTACGAAAAGGAGGCGGATAATTCAGATGCTGATCGCA
CCTATTTGGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig103568:2..311+

>mRNA_H-fluviatilis_contig103568.717.1 ID=mRNA_H-fluviatilis_contig103568.717.1|Name=mRNA_H-fluviatilis_contig103568.717.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=504bp|location=Sequence derived from alignment at H-fluviatilis_contig103568:2..311+ (Heribaudiella fluviatilis SAG_13_90)
GAGAAAGAGAATTTGTTGCAAACCCCATTCAAACGGTCTGAGTTGATCAC
GACACGAACGCCTGACCCACACCGACGTCCGTTCAGCGTTCGCCAGGACA
ATTCAAACACCATGGAGAAAGAGAATTTGTTGCAAACCCCATTCAAACGG
TCTGAGTTGATCACGACACGAACGCCTGACCCACACCGACGTCCGTTCAG
CGTTCGCCAGGACAATTCAAACACCATGGGATTTCCTATAGAGCAAGAAT
ACTTGGATGTTGAGGCTTGTAAGAGGCTAATTCAGAATGCCCGTACACAA
CTCCTCAGCACGGCTTCCCCATTCCGGAAGGGATTTCCTATAGAGCAAGA
ATACTTGGATGTTGAGGCTTGTAAGAGGCTAATTCAGAATGCCCGTACAC
AACTCCTCAGCACGGCTTCCCCATTCCGGAAGGAGGCGGATAATTCAGAT
GCTGATCGCACCTATTTGGAGGCGGATAATTCAGATGCTGATCGCACCTA
TTTG
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