mRNA_H-fluviatilis_contig10356.715.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10356.715.1
Unique NamemRNA_H-fluviatilis_contig10356.715.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10356.715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10356contigH-fluviatilis_contig10356:5028..5801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size406
Cds size273
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10356.715.1prot_H-fluviatilis_contig10356.715.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10356 5028..5668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.8596542-CDS-H-fluviatilis_contig10356:5027..50541622929086.8596542-CDS-H-fluviatilis_contig10356:5027..5054Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10356 5028..5054 +
1691135176.901832-CDS-H-fluviatilis_contig10356:5027..50541691135176.901832-CDS-H-fluviatilis_contig10356:5027..5054Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10356 5028..5054 +
1622929086.8737507-CDS-H-fluviatilis_contig10356:5422..56681622929086.8737507-CDS-H-fluviatilis_contig10356:5422..5668Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10356 5423..5668 +
1691135176.9104521-CDS-H-fluviatilis_contig10356:5422..56681691135176.9104521-CDS-H-fluviatilis_contig10356:5422..5668Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10356 5423..5668 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.8849688-UTR-H-fluviatilis_contig10356:5668..58011622929086.8849688-UTR-H-fluviatilis_contig10356:5668..5801Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10356 5669..5801 +
1691135176.924131-UTR-H-fluviatilis_contig10356:5668..58011691135176.924131-UTR-H-fluviatilis_contig10356:5668..5801Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10356 5669..5801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10356.715.1

>prot_H-fluviatilis_contig10356.715.1 ID=prot_H-fluviatilis_contig10356.715.1|Name=mRNA_H-fluviatilis_contig10356.715.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=91bp
CFHHRGRFRDRLQLRRHLQLHQLQLRQGVYIVIPCGFSTGKIPAKHSVIY
STYPLFFPSPDHRRPCSCHGRLSLMANHLRALVYDNVAQG*
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mRNA from alignment at H-fluviatilis_contig10356:5028..5801+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10356.715.1 ID=mRNA_H-fluviatilis_contig10356.715.1|Name=mRNA_H-fluviatilis_contig10356.715.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=774bp|location=Sequence derived from alignment at H-fluviatilis_contig10356:5028..5801+ (Heribaudiella fluviatilis SAG_13_90)
TGCTTCCACCACCGCGGACGCTTCCGGGTAAGGGTTCTTTGGGTCACAAG
AAAAACGCGGCTGACCATCAGTTCTCGATGCGCGATGTGGTAGCACGCTC
ATGCCTCGAAGGTGGTAGAGTCGAGTCAACGGGGAGGATGGGCTGGCGGT
CTCGACGTTTTCCTTTTTTGTGATCCGTATGTTCGGATACGGAAGGTCGC
GAGTAGACGCCAGGCGAGTCTCGCAGATGACAAGGACCGACTAGGGATCA
AGATACAACTGCTTGTGAGCTCGAGGAGTGTGCCACGTTGATGTATCATT
CCCCATCATCCTACACATGATGATCGTGAACGCATTGAACAATGAAGCTT
ACCAGTCTGTTTTTGTGTTCGTTCGTGATCGCGATCGGATCGCAGGACCG
GTTGCAACTGCGGCGACACCTGCAACTGCACCAACTGCAACTGCGGCAAG
GCGTCTACATCGTGATTCCTTGTGGTTTTTCAACTGGAAAAATCCCGGCT
AAACACAGCGTGATCTACAGCACGTACCCTCTTTTTTTTCCGAGTCCCGA
CCACAGACGACCATGTTCGTGCCATGGGCGGTTGTCGCTCATGGCGAATC
ACTTACGAGCTCTGGTGTATGATAATGTTGCTCAAGGCTAGGAACCGTCG
GCTTTCAACTACTGCCGTGACTACCGTATTCCGGACATAATAATGAGAAA
CATCAGAGTCAGCGTATGTTCGGTAACGTTTAGCCGGTTGTATATGGTAT
GATTGATAATCCCGACAGGTCGGG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10356:5028..5801+

>mRNA_H-fluviatilis_contig10356.715.1 ID=mRNA_H-fluviatilis_contig10356.715.1|Name=mRNA_H-fluviatilis_contig10356.715.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=546bp|location=Sequence derived from alignment at H-fluviatilis_contig10356:5028..5801+ (Heribaudiella fluviatilis SAG_13_90)
TGCTTCCACCACCGCGGACGCTTCCGGTGCTTCCACCACCGCGGACGCTT
CCGGGACCGGTTGCAACTGCGGCGACACCTGCAACTGCACCAACTGCAAC
TGCGGCAAGGCGTCTACATCGTGATTCCTTGTGGTTTTTCAACTGGAAAA
ATCCCGGCTAAACACAGCGTGATCTACAGCACGTACCCTCTTTTTTTTCC
GAGTCCCGACCACAGACGACCATGTTCGTGCCATGGGCGGTTGTCGCTCA
TGGCGAATCACTTACGAGCTCTGGTGTATGATAATGTTGCTCAAGGCTAG
GACCGGTTGCAACTGCGGCGACACCTGCAACTGCACCAACTGCAACTGCG
GCAAGGCGTCTACATCGTGATTCCTTGTGGTTTTTCAACTGGAAAAATCC
CGGCTAAACACAGCGTGATCTACAGCACGTACCCTCTTTTTTTTCCGAGT
CCCGACCACAGACGACCATGTTCGTGCCATGGGCGGTTGTCGCTCATGGC
GAATCACTTACGAGCTCTGGTGTATGATAATGTTGCTCAAGGCTAG
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