mRNA_H-fluviatilis_contig103553.714.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103553.714.1
Unique NamemRNA_H-fluviatilis_contig103553.714.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103553.714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103553contigH-fluviatilis_contig103553:2..298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size238
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.8026876-CDS-H-fluviatilis_contig103553:2..1571622929086.8026876-CDS-H-fluviatilis_contig103553:2..157Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103553 3..157 -
1691135176.8852358-CDS-H-fluviatilis_contig103553:2..1571691135176.8852358-CDS-H-fluviatilis_contig103553:2..157Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103553 3..157 -
1622929086.8144453-CDS-H-fluviatilis_contig103553:216..2981622929086.8144453-CDS-H-fluviatilis_contig103553:216..298Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103553 217..298 -
1691135176.8932276-CDS-H-fluviatilis_contig103553:216..2981691135176.8932276-CDS-H-fluviatilis_contig103553:216..298Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103553 217..298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103553.714.1prot_H-fluviatilis_contig103553.714.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103553 3..298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103553.714.1

>prot_H-fluviatilis_contig103553.714.1 ID=prot_H-fluviatilis_contig103553.714.1|Name=mRNA_H-fluviatilis_contig103553.714.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=79bp
RSWLWHGLTLTVFVHSVLVFRLPSSSTYTGSSVVVTHCGVRCGGLGFADG
RVMSPVATKLFGVCGVSRQLTAHQSLHMG
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mRNA from alignment at H-fluviatilis_contig103553:2..298-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103553.714.1 ID=mRNA_H-fluviatilis_contig103553.714.1|Name=mRNA_H-fluviatilis_contig103553.714.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=297bp|location=Sequence derived from alignment at H-fluviatilis_contig103553:2..298- (Heribaudiella fluviatilis SAG_13_90)
AGGTCGTGGCTTTGGCATGGGCTGACATTGACGGTCTTTGTGCACTCGGT
GCTCGTGTTTCGCCTCCCCTCATCGTCCACTTGTGAGCCACTTCTTCCCA
CCCTCTATCCGCACAGCTCTCAAACCACTCTGTCCTCACAGACACAGGCA
GCTCGGTGGTAGTGACCCACTGCGGCGTGCGATGCGGCGGCTTGGGATTT
GCTGACGGTAGGGTCATGAGTCCAGTTGCAACGAAATTGTTCGGTGTGTG
CGGTGTGAGCAGGCAGCTTACGGCACACCAGTCACTTCACATGGGAG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig103553:2..298-

>mRNA_H-fluviatilis_contig103553.714.1 ID=mRNA_H-fluviatilis_contig103553.714.1|Name=mRNA_H-fluviatilis_contig103553.714.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=474bp|location=Sequence derived from alignment at H-fluviatilis_contig103553:2..298- (Heribaudiella fluviatilis SAG_13_90)
AGGTCGTGGCTTTGGCATGGGCTGACATTGACGGTCTTTGTGCACTCGGT
GCTCGTGTTTCGCCTCCCCTCATCGTCCACTTAGGTCGTGGCTTTGGCAT
GGGCTGACATTGACGGTCTTTGTGCACTCGGTGCTCGTGTTTCGCCTCCC
CTCATCGTCCACTTACACAGGCAGCTCGGTGGTAGTGACCCACTGCGGCG
TGCGATGCGGCGGCTTGGGATTTGCTGACGGTAGGGTCATGAGTCCAGTT
GCAACGAAATTGTTCGGTGTGTGCGGTGTGAGCAGGCAGCTTACGGCACA
CCAGTCACTTCACATGGGAACACAGGCAGCTCGGTGGTAGTGACCCACTG
CGGCGTGCGATGCGGCGGCTTGGGATTTGCTGACGGTAGGGTCATGAGTC
CAGTTGCAACGAAATTGTTCGGTGTGTGCGGTGTGAGCAGGCAGCTTACG
GCACACCAGTCACTTCACATGGGA
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