mRNA_H-fluviatilis_contig103506.708.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103506.708.1
Unique NamemRNA_H-fluviatilis_contig103506.708.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig103506.708.1 vs. uniprot
Match: A0A7N9AP25_9TELE (Plac8 onzin related protein 1 n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A7N9AP25_9TELE)

HSP 1 Score: 70.1 bits (170), Expect = 2.880e-12
Identity = 36/92 (39.13%), Postives = 50/92 (54.35%), Query Frame = 3
Query:    3 TW--GLYECCANPEKAACALFCGPCTHGMDMQKLGKNCCLSCVLMCCMLPCN-RSTVRERYHIPGGCCSDCVAAYCCGCCSIVQISHEITTR 269
            TW  GL +CC++     CAL+C PC         G  CCL  + +CC++ C+ RS++RERY IPG  C DC     C  C+  Q+  E+  R
Sbjct:   21 TWSTGLCDCCSDMGTCCCALWCFPCMQCQAANYHGWCCCLPMLDVCCVVSCSLRSSIRERYGIPGSLCDDCCKLLWCYPCTWCQMHREVKIR 112          
BLAST of mRNA_H-fluviatilis_contig103506.708.1 vs. uniprot
Match: UPI001BE553B6 (plac8 onzin related protein 1 n=1 Tax=Chelmon rostratus TaxID=109905 RepID=UPI001BE553B6)

HSP 1 Score: 68.9 bits (167), Expect = 7.800e-12
Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 3
Query:    3 TW--GLYECCANPEKAACALFCGPCTHGMDMQKLGKNCCLSCVLMCCMLPCN-RSTVRERYHIPGGCCSDCVAAYCCGCCSIVQISHEITTR 269
            TW  GL +CC +     C LFC PC         G  CC+  + +CC++ C  RS++RERY+IPG  C DC     C  C   Q++ E+  R
Sbjct:   20 TWSSGLCDCCNDMSTCCCGLFCFPCMQCQTAADYGWCCCMPLLDVCCVVSCVLRSSIRERYNIPGSFCDDCCKLLWCYQCVWCQMNRELKIR 111          
BLAST of mRNA_H-fluviatilis_contig103506.708.1 vs. uniprot
Match: UPI001CF69C50 (plac8 onzin related protein 1 isoform X1 n=4 Tax=Thunnus TaxID=8234 RepID=UPI001CF69C50)

HSP 1 Score: 69.3 bits (168), Expect = 1.160e-11
Identity = 34/90 (37.78%), Postives = 48/90 (53.33%), Query Frame = 3
Query:    3 TWGLYECCANPEKAACALFCGPCTHGMDMQKLGKNCCLSCVLMCCMLPCN-RSTVRERYHIPGGCCSDCVAAYCCGCCSIVQISHEITTR 269
            T GL +CC +     C L+C PC       K G  CCL  + +CC++ C  RS++R++Y IPG CC DC     C  C   Q++ E+  R
Sbjct:   57 TSGLCDCCNDMGTCCCGLWCFPCMQCQTASKHGWCCCLPLLDVCCVVSCLLRSSIRDKYGIPGSCCEDCCQLTWCYPCVWCQMNRELKVR 146          
BLAST of mRNA_H-fluviatilis_contig103506.708.1 vs. uniprot
Match: UPI001C044C97 (placenta-specific gene 8 protein-like n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C044C97)

HSP 1 Score: 66.2 bits (160), Expect = 8.540e-11
Identity = 37/94 (39.36%), Postives = 50/94 (53.19%), Query Frame = 3
Query:    9 GLYECCANPEKAACALFCGPCTHGMDMQKLGKNCCLSCVLMCC-MLPCN-RSTVRERYHIPGGCCSDCVAAYCCGCCSIVQISHEITTRTIYAP 284
            GL +CC++     C  +C PC       K G  CC   +L CC ++ C  RS++RERY IPG CC DC     C  C+  Q++ E+  RT Y P
Sbjct:   24 GLCDCCSDMGTCCCGYWCFPCMQCETASKHGW-CCGMPLLDCCGVVSCLLRSSIRERYGIPGSCCDDCCTLCWCYVCAWCQMNREVKIRTRYQP 116          
BLAST of mRNA_H-fluviatilis_contig103506.708.1 vs. uniprot
Match: A0A672I5U9_SALFA (Uncharacterized protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672I5U9_SALFA)

HSP 1 Score: 65.5 bits (158), Expect = 1.180e-10
Identity = 33/89 (37.08%), Postives = 47/89 (52.81%), Query Frame = 3
Query:    9 GLYECCANPEKAACALFCGPCTHGMDMQKLGKNCCLSCV-LMCCMLPCN-RSTVRERYHIPGGCCSDCVAAYCCGCCSIVQISHEITTR 269
            GL++CC++ E   C L C PC         G    + C+   CC++ C  RS++RERY IPG  C DC   + C  C   Q++ E+ TR
Sbjct:   24 GLFDCCSDVETCCCGLLCFPCMQCQTASSHGWCSLMPCLDAFCCVVSCMLRSSIRERYAIPGSFCDDCCNIFWCYPCVWCQMNRELKTR 112          
BLAST of mRNA_H-fluviatilis_contig103506.708.1 vs. uniprot
Match: UPI001A99CB7E (plac8 onzin related protein 1 n=1 Tax=Xiphias gladius TaxID=8245 RepID=UPI001A99CB7E)

HSP 1 Score: 65.5 bits (158), Expect = 1.680e-10
Identity = 36/96 (37.50%), Postives = 49/96 (51.04%), Query Frame = 3
Query:    3 TW--GLYECCANPEKAACALFCGPCTHGMDMQKLGKNCCLSCVLMC-----CMLPCNRSTVRERYHIPGGCCSDCVAAYCCGCCSIVQISHEITTR 269
            TW  GL +CC++     C L+C PC         G  CC+  +  C     C+L   RS+VRERY IPG CC DC   + C  C+  Q++ E+  R
Sbjct:   20 TWSTGLCDCCSDMGTCCCGLWCFPCMQCQTANIHGWCCCIPILDACXXVVSCLL---RSSVRERYGIPGSCCDDCCKFFWCYMCAWCQMNRELKIR 112          
BLAST of mRNA_H-fluviatilis_contig103506.708.1 vs. uniprot
Match: A0A7N6B3Y2_ANATE (Cornifelin-like n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A7N6B3Y2_ANATE)

HSP 1 Score: 65.1 bits (157), Expect = 2.250e-10
Identity = 31/89 (34.83%), Postives = 46/89 (51.69%), Query Frame = 3
Query:    9 GLYECCANPEKAACALFCGPCTHGMDMQKLGKNCCLSCVLMCCMLP-CNRSTVRERYHIPGGCCSDCVAAYCCGCCSIVQISHEITTRT 272
            GL++CC++ E   C  +C PC         G  CC+     CC++    R+++RERY+IPG CC D      C  C+  Q+  E+  RT
Sbjct:   23 GLFDCCSDMETFCCGFWCFPCMQCETAHTFGWCCCVPMADECCVVSYLLRTSIRERYNIPGSCCGDYCTVIWCYQCAWCQMHREVKIRT 111          
BLAST of mRNA_H-fluviatilis_contig103506.708.1 vs. uniprot
Match: A0A667ZUR2_9TELE (Placenta-specific gene 8 protein-like n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667ZUR2_9TELE)

HSP 1 Score: 65.1 bits (157), Expect = 2.580e-10
Identity = 35/91 (38.46%), Postives = 47/91 (51.65%), Query Frame = 3
Query:   12 LYECCANPEKAACALFCGPCTHGMDMQKLGKNCCLSCVLM----CCMLPCN-RSTVRERYHIPGGCCSDCVAAYCCGCCSIVQISHEITTR 269
            + +CCA+     CAL C PC      +  G  CC    L+    C  + C+ RS++R+RY IPGGCC DC    CC  C   Q+S E+  R
Sbjct:   27 MCDCCADMGTCCCALLCFPCLQCKTAKDFGW-CCWCMPLLDSCFCFAVSCHLRSSIRQRYGIPGGCCDDCCKVMCCYPCVWCQMSREVNVR 116          
BLAST of mRNA_H-fluviatilis_contig103506.708.1 vs. uniprot
Match: A0A3Q1GY46_ANATE (Cornifelin-like n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1GY46_ANATE)

HSP 1 Score: 63.5 bits (153), Expect = 8.670e-10
Identity = 30/88 (34.09%), Postives = 45/88 (51.14%), Query Frame = 3
Query:    9 GLYECCANPEKAACALFCGPCTHGMDMQKLGKNCCLSCVLMCCMLP-CNRSTVRERYHIPGGCCSDCVAAYCCGCCSIVQISHEITTR 269
            GL++CC++ E   C  +C PC         G  CC+     CC++    R+++RERY+IPG CC D      C  C+  Q+  E+  R
Sbjct:   23 GLFDCCSDMETFCCGFWCFPCMQCETAHTFGWCCCVPMADECCVVSYLLRTSIRERYNIPGSCCGDYCTVIWCNECAWCQMRRELRIR 110          
BLAST of mRNA_H-fluviatilis_contig103506.708.1 vs. uniprot
Match: UPI001176766C (cornifelin homolog B-like n=1 Tax=Salarias fasciatus TaxID=181472 RepID=UPI001176766C)

HSP 1 Score: 61.6 bits (148), Expect = 2.320e-9
Identity = 29/79 (36.71%), Postives = 43/79 (54.43%), Query Frame = 3
Query:   36 EKAACALFCGPCTHGMDMQKLGKNCCLSCVLMCCMLPCN-RSTVRERYHIPGGCCSDCVAAYCCGCCSIVQISHEITTR 269
            +   C  +C PC       K G  C + C+  CC++ C  RS++RERY IPG CC+DC   + C  C   Q++ E+ +R
Sbjct:    2 KTCCCGFWCFPCMQCQTASKHGWCCLMPCLDFCCVVSCVLRSSIRERYAIPGSCCNDCCNIFWCYPCVWCQMNRELKSR 80          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103506.708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7N9AP25_9TELE2.880e-1239.13Plac8 onzin related protein 1 n=1 Tax=Mastacembelu... [more]
UPI001BE553B67.800e-1238.04plac8 onzin related protein 1 n=1 Tax=Chelmon rost... [more]
UPI001CF69C501.160e-1137.78plac8 onzin related protein 1 isoform X1 n=4 Tax=T... [more]
UPI001C044C978.540e-1139.36placenta-specific gene 8 protein-like n=1 Tax=Mela... [more]
A0A672I5U9_SALFA1.180e-1037.08Uncharacterized protein n=1 Tax=Salarias fasciatus... [more]
UPI001A99CB7E1.680e-1037.50plac8 onzin related protein 1 n=1 Tax=Xiphias glad... [more]
A0A7N6B3Y2_ANATE2.250e-1034.83Cornifelin-like n=1 Tax=Anabas testudineus TaxID=6... [more]
A0A667ZUR2_9TELE2.580e-1038.46Placenta-specific gene 8 protein-like n=1 Tax=Myri... [more]
A0A3Q1GY46_ANATE8.670e-1034.09Cornifelin-like n=1 Tax=Anabas testudineus TaxID=6... [more]
UPI001176766C2.320e-936.71cornifelin homolog B-like n=1 Tax=Salarias fasciat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103506contigH-fluviatilis_contig103506:2..690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons6
Model size536
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103506.708.1prot_H-fluviatilis_contig103506.708.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103506 110..600 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929085.8601055-UTR-H-fluviatilis_contig103506:1..431622929085.8601055-UTR-H-fluviatilis_contig103506:1..43Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig103506 2..43 +
1691135176.584565-UTR-H-fluviatilis_contig103506:1..431691135176.584565-UTR-H-fluviatilis_contig103506:1..43Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig103506 2..43 +
1622929085.8751507-UTR-H-fluviatilis_contig103506:71..1091622929085.8751507-UTR-H-fluviatilis_contig103506:71..109Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig103506 72..109 +
1691135176.5951738-UTR-H-fluviatilis_contig103506:71..1091691135176.5951738-UTR-H-fluviatilis_contig103506:71..109Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig103506 72..109 +
1622929086.0717926-UTR-H-fluviatilis_contig103506:600..6901622929086.0717926-UTR-H-fluviatilis_contig103506:600..690Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig103506 601..690 +
1691135176.6510763-UTR-H-fluviatilis_contig103506:600..6901691135176.6510763-UTR-H-fluviatilis_contig103506:600..690Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig103506 601..690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929085.8904114-CDS-H-fluviatilis_contig103506:109..2141622929085.8904114-CDS-H-fluviatilis_contig103506:109..214Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103506 110..214 +
1691135176.6055157-CDS-H-fluviatilis_contig103506:109..2141691135176.6055157-CDS-H-fluviatilis_contig103506:109..214Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103506 110..214 +
1622929085.9160008-CDS-H-fluviatilis_contig103506:247..3191622929085.9160008-CDS-H-fluviatilis_contig103506:247..319Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103506 248..319 +
1691135176.6147575-CDS-H-fluviatilis_contig103506:247..3191691135176.6147575-CDS-H-fluviatilis_contig103506:247..319Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103506 248..319 +
1622929085.9335918-CDS-H-fluviatilis_contig103506:348..4061622929085.9335918-CDS-H-fluviatilis_contig103506:348..406Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103506 349..406 +
1691135176.6238658-CDS-H-fluviatilis_contig103506:348..4061691135176.6238658-CDS-H-fluviatilis_contig103506:348..406Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103506 349..406 +
1622929085.9541929-CDS-H-fluviatilis_contig103506:435..4681622929085.9541929-CDS-H-fluviatilis_contig103506:435..468Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103506 436..468 +
1691135176.6330419-CDS-H-fluviatilis_contig103506:435..4681691135176.6330419-CDS-H-fluviatilis_contig103506:435..468Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103506 436..468 +
1622929086.0555904-CDS-H-fluviatilis_contig103506:502..6001622929086.0555904-CDS-H-fluviatilis_contig103506:502..600Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103506 503..600 +
1691135176.642472-CDS-H-fluviatilis_contig103506:502..6001691135176.642472-CDS-H-fluviatilis_contig103506:502..600Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103506 503..600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103506.708.1

>prot_H-fluviatilis_contig103506.708.1 ID=prot_H-fluviatilis_contig103506.708.1|Name=mRNA_H-fluviatilis_contig103506.708.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=122bp
MDMQKLGKNCCLSCVLMCCMLPCNRSTVRERYHIPGGCCSDCVAAYCCGC
CSIVQISHEITTRTIYAPPHPEPIQMHDDEVKVQGPPSPGGTPPPVPSRE
DYQRRQSQNSPRIADMRQGEP*
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mRNA from alignment at H-fluviatilis_contig103506:2..690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103506.708.1 ID=mRNA_H-fluviatilis_contig103506.708.1|Name=mRNA_H-fluviatilis_contig103506.708.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=689bp|location=Sequence derived from alignment at H-fluviatilis_contig103506:2..690+ (Heribaudiella fluviatilis SAG_13_90)
GGACCTGGGGGTTGTACGAATGTTGTGCAAACCCAGAAAAAGGTAAGGTT GGTTACACAACCATGTGCAGCGGCCTGTGCCTTGTTCTGTGGACCCTGTA CACACGGGATGGACATGCAAAAGCTTGGCAAGAATTGCTGCTTGTCTTGT GTGCTGATGTGCTGTATGCTGCCTTGCAATCGGAGCACCGTTCGCGAGCG CTATCACATTCCGGTTGTCGTTCCGTATTTGTCTCATTCATCCCAGGGAG GATGTTGCAGTGATTGCGTGGCTGCATATTGCTGTGGATGCTGCTCCATT GTACAAATCTCGCACGAGGTAGGGCTCCACCGGGCCACTCACTGCAGATC ACGACCCGCACGATTTATGCGCCACCGCATCCTGAACCCATTCAAATGCA CGATGGTGCATTGTGTACGCGTCACGTTTTGCAGACGAAGTGAAAGTGCA AGGACCGCCGTCCCCAGGTGCGTACTGATTGCCTGAGCTGACTGCCCACA GGTGGCACCCCTCCGCCGGTGCCGTCTCGCGAAGACTACCAACGTCGTCA GAGTCAGAACTCGCCGCGCATTGCCGACATGCGACAAGGGGAGCCATGAA CGCTTCTATGGAGTCCCTGTTTTGTTCCTGCTTTTTCATTGAATGTTTCT TGGTTTCGCATGACTGTTGAATTTTGCAATTGTACCTGT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig103506:2..690+

>mRNA_H-fluviatilis_contig103506.708.1 ID=mRNA_H-fluviatilis_contig103506.708.1|Name=mRNA_H-fluviatilis_contig103506.708.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=732bp|location=Sequence derived from alignment at H-fluviatilis_contig103506:2..690+ (Heribaudiella fluviatilis SAG_13_90)
ATGGACATGCAAAAGCTTGGCAAGAATTGCTGCTTGTCTTGTGTGCTGAT
GTGCTGTATGCTGCCTTGCAATCGGAGCACCGTTCGCGAGCGCTATCACA
TTCCGATGGACATGCAAAAGCTTGGCAAGAATTGCTGCTTGTCTTGTGTG
CTGATGTGCTGTATGCTGCCTTGCAATCGGAGCACCGTTCGCGAGCGCTA
TCACATTCCGGGAGGATGTTGCAGTGATTGCGTGGCTGCATATTGCTGTG
GATGCTGCTCCATTGTACAAATCTCGCACGAGGGAGGATGTTGCAGTGAT
TGCGTGGCTGCATATTGCTGTGGATGCTGCTCCATTGTACAAATCTCGCA
CGAGATCACGACCCGCACGATTTATGCGCCACCGCATCCTGAACCCATTC
AAATGCACGATGATCACGACCCGCACGATTTATGCGCCACCGCATCCTGA
ACCCATTCAAATGCACGATGACGAAGTGAAAGTGCAAGGACCGCCGTCCC
CAGACGAAGTGAAAGTGCAAGGACCGCCGTCCCCAGGTGGCACCCCTCCG
CCGGTGCCGTCTCGCGAAGACTACCAACGTCGTCAGAGTCAGAACTCGCC
GCGCATTGCCGACATGCGACAAGGGGAGCCATGAGTGGCACCCCTCCGCC
GGTGCCGTCTCGCGAAGACTACCAACGTCGTCAGAGTCAGAACTCGCCGC
GCATTGCCGACATGCGACAAGGGGAGCCATGA
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