mRNA_H-fluviatilis_contig10348.703.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10348.703.1
Unique NamemRNA_H-fluviatilis_contig10348.703.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10348.703.1 vs. uniprot
Match: A0A6H5K6L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L5_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.810e-13
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:  439 ERKLRVNLPLIWTFLREREGWRFVNDSSWDVAGPSRRGGGDA--EVARPIPQTQLPTLLVQNPEMLERYMQWQREARSAS 672
            E++L  +LPLIWTFLRE+EGW F ND SW V GP    G  +  + A P+P  +LP  L+ NPE+ ERY +W RE   +S
Sbjct:  279 EKRLSRDLPLIWTFLREKEGWGFANDHSWHVCGPDATAGAGSGKQRAGPMPLGRLPRCLLDNPELFERYKRWLREVSKSS 358
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10348.703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K6L5_9PHAE1.810e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10348contigH-fluviatilis_contig10348:44..2468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Ec32 orthologEc-25_001640.2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001640.1
Exons2
Model size1248
Cds size1143
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10348.703.1prot_H-fluviatilis_contig10348.703.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10348 44..2363 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.9578178-CDS-H-fluviatilis_contig10348:43..6971622929084.9578178-CDS-H-fluviatilis_contig10348:43..697Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10348 44..697 -
1691135176.1793444-CDS-H-fluviatilis_contig10348:43..6971691135176.1793444-CDS-H-fluviatilis_contig10348:43..697Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10348 44..697 -
1622929085.0683894-CDS-H-fluviatilis_contig10348:1874..23631622929085.0683894-CDS-H-fluviatilis_contig10348:1874..2363Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10348 1875..2363 -
1691135176.1870294-CDS-H-fluviatilis_contig10348:1874..23631691135176.1870294-CDS-H-fluviatilis_contig10348:1874..2363Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10348 1875..2363 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929085.0846362-UTR-H-fluviatilis_contig10348:2363..24681622929085.0846362-UTR-H-fluviatilis_contig10348:2363..2468Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10348 2364..2468 -
1691135176.1953151-UTR-H-fluviatilis_contig10348:2363..24681691135176.1953151-UTR-H-fluviatilis_contig10348:2363..2468Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10348 2364..2468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10348.703.1

>prot_H-fluviatilis_contig10348.703.1 ID=prot_H-fluviatilis_contig10348.703.1|Name=mRNA_H-fluviatilis_contig10348.703.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=381bp
MESRSQLVRHIRRPDITTNNSVDWWLWLRRSLVRKPAYPRQQSTDTSNDS
AGQPVAKRGRDAGSASRSGNGAPGNATSVSSGPHGSFTSTGVDETRRVSI
TTEAVQRAELLERKLRVNLPLIWTFLREREGWRFVNDSSWDVAGPSRRGG
GDAEVARPIPQTQLPTLLVQNPEMLERYMQWQREARSASPALDESDDSDV
EPTLSDTGSIAVPTKGDGAVHRKSPQLVPSGCFSEETSQLNSCTASSRRL
EETNPNHSVSLSENRATNASEDMIFDDVFSEDLYGHDSSDQSTVSISSTW
TSMTSTDISTAAASSALSTPRATAITGVAATLPATTITQPTTVAPVNTAA
ADSDTDTEDAHAVQDGARGRVEDQREGVDEM
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mRNA from alignment at H-fluviatilis_contig10348:44..2468-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10348.703.1 ID=mRNA_H-fluviatilis_contig10348.703.1|Name=mRNA_H-fluviatilis_contig10348.703.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=2425bp|location=Sequence derived from alignment at H-fluviatilis_contig10348:44..2468- (Heribaudiella fluviatilis SAG_13_90)
CCCGACAACAGAACCAACGAAATGATGGTGAACTCGAATCCGGCAAACTC
GATCGCGGAAGCTGCCGCAACACACGGTACACTCTGCAATTGAGCAGGAG
TCATCATGGAGAGCAGATCACAGCTTGTGCGCCATATCCGTCGTCCCGAT
ATCACCACTAACAATAGCGTTGACTGGTGGTTGTGGCTTCGGCGGTCTCT
TGTCCGGAAACCTGCATATCCTCGACAGCAATCGACTGACACTTCGAATG
ACAGTGCGGGGCAACCAGTCGCCAAGCGAGGCAGGGACGCCGGTAGCGCG
AGCCGTAGTGGCAACGGTGCGCCAGGGAACGCGACATCGGTATCGTCTGG
GCCGCATGGAAGCTTCACAAGTACTGGAGTTGACGAGACGAGGCGCGTTT
CTATCACCACGGAGGCTGTGCAGAGGGCAGAATTGTTGGAGAGGAAGTTG
AGGGTCAATTTGCCCCTAATCTGGACGTTTCTGCGAGAGCGGGAAGGGTG
GCGCTTCGTGAACGACAGCAGCTGGGATGTGGCGGGGCCGTCGCGTCGCG
GCGGCGGTGATGCGGAAGTCGCGCGACCGATTCCGCAGACACAGGTCAGT
TTACGTCTTCCCCTCAATCAAGCCTCGTTGTGAGGTTGCGCCAGCTGGTT
TGTGCAACGATGCGGCACGATCGTTCAGTACGACTGCTTGATTTCAACAC
AGGTCCTGTTCAACAAAGTTCGAGATTTTTTTCCGCTGGGACATGAGGCC
ATGATGGTTGCCTGTCATGTTTCCTCTTGAACGCAGTATAGTTTTCGTAC
ACCCCGGTAATTTGCAAGTCCGTACCCTAAGGTACCCGGCAGTGCTCGAG
TATGTGGTGAATCTGTGCCCTGAGGTACCCGCGGCACTCGTGTACTTCTG
ACCGCAGTAACCTGACGGATACCGCTTTTGTACCCGATGCCCCGGTTACA
CCCACGTACACCTAGGGTAAACGCTCATTCTTGAAGGCTATGTACCCCGG
ATGCTACATTCGTCGTAATGACTCACCAGTACAGCACACTAGCTCTTCAC
GAGCTTCAAGAGTTGAAAAGTCTCGAGATCTGCTTTATTTTTTGGCTCTC
TTGGTCCGTACACATTTAGCACTGATTTGCGATGAAGTGGGTCGAGCGTT
GGCACTTTCCCGTACGCGCAACATGATCATGCCCAGAACTAGACGGTAAA
CTCGCTTGGTGTTTGAGGTTTGCTTGTCAGGTGTGCGGGACTTCAGCGAC
ATGCGACAGTAAATACTATGTGTAGGAAGAAAATGAAGTAGCACAATTGC
CAGGAGTCGTACCAAAGGATGGAGTTGTTCGTATGCTCACTGTGGTGTAT
CACGCTGCGGACGTGCAACCGATCAATTTTCGGTCCGTCGGAGAAACATT
GCCGTGTGCGGGCAGCGCCCTTGGTTGACACGGTGTGTACCGAAAAAGTA
CAAACTGGATTGGACAGACAACACCATGAAGAGCTCTTAGTGGTGGCGTG
TGAGCTACACGAGTCCAAGCTTTTGACGTTCGTCGGTTTCTACTGCATTG
GCAATCGCAGAACCCTGAGCACACTCGTTTCGTTTTGAAACCTGCCCGGC
GCGCGATGACGACCGTGACCAGTTTTAAGCACCTTGCGCAAATGCCGCTC
GCGCAAAATACCCTGCACCTGCGTACGAGTTACTCTACTCCAGAGCAGCC
CTTGTGATAATCTTTCCCCGCCCTCGCACCTCGTCCCCATCGCCATGCCC
GGTATTTATGTGCACACCCAGCTGCCCACACTCCTCGTACAGAACCCGGA
GATGCTGGAGAGATACATGCAGTGGCAACGAGAAGCAAGGAGTGCCTCGC
CCGCCCTTGATGAAAGTGACGATTCCGACGTGGAGCCCACCCTCTCAGAC
ACGGGCTCGATCGCCGTTCCAACGAAGGGCGATGGTGCGGTGCACCGAAA
ATCACCACAGCTGGTGCCATCAGGGTGCTTCAGCGAGGAAACCTCGCAAC
TGAACAGTTGCACCGCCAGCTCCCGGCGACTGGAGGAGACGAATCCGAAT
CATTCTGTAAGCCTTTCTGAGAATCGTGCCACGAACGCATCCGAGGATAT
GATTTTTGACGACGTATTTTCTGAAGATTTGTATGGGCATGATTCCTCAG
ACCAGTCCACCGTTTCGATTTCTTCCACGTGGACTTCGATGACCTCTACG
GATATTTCAACAGCCGCTGCTTCCAGCGCGCTCTCCACACCACGCGCCAC
GGCCATAACTGGCGTTGCGGCCACCCTTCCCGCCACGACTATTACGCAAC
CGACTACCGTAGCTCCCGTGAATACCGCTGCGGCCGATTCTGACACCGAT
ACCGAGGACGCGCACGCCGTTCAGGATGGCGCGCGCGGGCGGGTCGAGGA
TCAACGGGAGGGTGTTGATGAAATG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10348:44..2468-

>mRNA_H-fluviatilis_contig10348.703.1 ID=mRNA_H-fluviatilis_contig10348.703.1|Name=mRNA_H-fluviatilis_contig10348.703.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=2286bp|location=Sequence derived from alignment at H-fluviatilis_contig10348:44..2468- (Heribaudiella fluviatilis SAG_13_90)
ATGGAGAGCAGATCACAGCTTGTGCGCCATATCCGTCGTCCCGATATCAC
CACTAACAATAGCGTTGACTGGTGGTTGTGGCTTCGGCGGTCTCTTGTCC
GGAAACCTGCATATCCTCGACAGCAATCGACTGACACTTCGAATGACAGT
GCGGGGCAACCAGTCGCCAAGCGAGGCAGGGACGCCGGTAGCGCGAGCCG
TAGTGGCAACGGTGCGCCAGGGAACGCGACATCGGTATCGTCTGGGCCGC
ATGGAAGCTTCACAAGTACTGGAGTTGACGAGACGAGGCGCGTTTCTATC
ACCACGGAGGCTGTGCAGAGGGCAGAATTGTTGGAGAGGAAGTTGAGGGT
CAATTTGCCCCTAATCTGGACGTTTCTGCGAGAGCGGGAAGGGTGGCGCT
TCGTGAACGACAGCAGCTGGGATGTGGCGGGGCCGTCGCGTCGCGGCGGC
GGTGATGCGGAAGTCGCGCGACCGATTCCGCAGACACAGATGGAGAGCAG
ATCACAGCTTGTGCGCCATATCCGTCGTCCCGATATCACCACTAACAATA
GCGTTGACTGGTGGTTGTGGCTTCGGCGGTCTCTTGTCCGGAAACCTGCA
TATCCTCGACAGCAATCGACTGACACTTCGAATGACAGTGCGGGGCAACC
AGTCGCCAAGCGAGGCAGGGACGCCGGTAGCGCGAGCCGTAGTGGCAACG
GTGCGCCAGGGAACGCGACATCGGTATCGTCTGGGCCGCATGGAAGCTTC
ACAAGTACTGGAGTTGACGAGACGAGGCGCGTTTCTATCACCACGGAGGC
TGTGCAGAGGGCAGAATTGTTGGAGAGGAAGTTGAGGGTCAATTTGCCCC
TAATCTGGACGTTTCTGCGAGAGCGGGAAGGGTGGCGCTTCGTGAACGAC
AGCAGCTGGGATGTGGCGGGGCCGTCGCGTCGCGGCGGCGGTGATGCGGA
AGTCGCGCGACCGATTCCGCAGACACAGCTGCCCACACTCCTCGTACAGA
ACCCGGAGATGCTGGAGAGATACATGCAGTGGCAACGAGAAGCAAGGAGT
GCCTCGCCCGCCCTTGATGAAAGTGACGATTCCGACGTGGAGCCCACCCT
CTCAGACACGGGCTCGATCGCCGTTCCAACGAAGGGCGATGGTGCGGTGC
ACCGAAAATCACCACAGCTGGTGCCATCAGGGTGCTTCAGCGAGGAAACC
TCGCAACTGAACAGTTGCACCGCCAGCTCCCGGCGACTGGAGGAGACGAA
TCCGAATCATTCTGTAAGCCTTTCTGAGAATCGTGCCACGAACGCATCCG
AGGATATGATTTTTGACGACGTATTTTCTGAAGATTTGTATGGGCATGAT
TCCTCAGACCAGTCCACCGTTTCGATTTCTTCCACGTGGACTTCGATGAC
CTCTACGGATATTTCAACAGCCGCTGCTTCCAGCGCGCTCTCCACACCAC
GCGCCACGGCCATAACTGGCGTTGCGGCCACCCTTCCCGCCACGACTATT
ACGCAACCGACTACCGTAGCTCCCGTGAATACCGCTGCGGCCGATTCTGA
CACCGATACCGAGGACGCGCACGCCGTTCAGGATGGCGCGCGCGGGCGGG
TCGAGGATCAACGGGAGGGTGTTGATGAAATGCTGCCCACACTCCTCGTA
CAGAACCCGGAGATGCTGGAGAGATACATGCAGTGGCAACGAGAAGCAAG
GAGTGCCTCGCCCGCCCTTGATGAAAGTGACGATTCCGACGTGGAGCCCA
CCCTCTCAGACACGGGCTCGATCGCCGTTCCAACGAAGGGCGATGGTGCG
GTGCACCGAAAATCACCACAGCTGGTGCCATCAGGGTGCTTCAGCGAGGA
AACCTCGCAACTGAACAGTTGCACCGCCAGCTCCCGGCGACTGGAGGAGA
CGAATCCGAATCATTCTGTAAGCCTTTCTGAGAATCGTGCCACGAACGCA
TCCGAGGATATGATTTTTGACGACGTATTTTCTGAAGATTTGTATGGGCA
TGATTCCTCAGACCAGTCCACCGTTTCGATTTCTTCCACGTGGACTTCGA
TGACCTCTACGGATATTTCAACAGCCGCTGCTTCCAGCGCGCTCTCCACA
CCACGCGCCACGGCCATAACTGGCGTTGCGGCCACCCTTCCCGCCACGAC
TATTACGCAACCGACTACCGTAGCTCCCGTGAATACCGCTGCGGCCGATT
CTGACACCGATACCGAGGACGCGCACGCCGTTCAGGATGGCGCGCGCGGG
CGGGTCGAGGATCAACGGGAGGGTGTTGATGAAATG
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