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Homology
BLAST of mRNA_H-fluviatilis_contig10347.702.1 vs. uniprot
Match: A0A6H5JVI6_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI6_9PHAE) HSP 1 Score: 116 bits (290), Expect = 7.080e-28 Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 2
Query: 38 RRLTMIQLASACEALGIPKDTVKTLKRWDRVHMITELAGVAVVENVKDQSTYPRFVQKNRPNAAVDETYARRVEN 262
RRLTM+QLAS CEA+GIPKDTVKTL+RWDRVHMI ELAGVAV ENVKDQ+ Y RFV+K RPNA +D+ R N
Sbjct: 324 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVAENVKDQNIYARFVRKRRPNATIDKDLYRATCN 398
BLAST of mRNA_H-fluviatilis_contig10347.702.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI) HSP 1 Score: 116 bits (290), Expect = 7.240e-28 Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 2
Query: 38 RRLTMIQLASACEALGIPKDTVKTLKRWDRVHMITELAGVAVVENVKDQSTYPRFVQKNRPNAAVDETYARRVEN 262
RRLTM+QLAS CEA+GIPKDTVKTL+RWDRVHMI ELAGVAV ENVKDQ+ Y RFV+K RPNA +D+ R N
Sbjct: 1110 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVAENVKDQNIYARFVRKRRPNATIDKDLYRATCN 1184
BLAST of mRNA_H-fluviatilis_contig10347.702.1 vs. uniprot
Match: A0A835ZI20_9STRA (DUF3591 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI20_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.290e-7 Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 2
Query: 38 RRLTMIQLASACEALGIPKDTVKTLKRWDRVHMITELAGVAVVENVKDQSTYPRFVQKNRPNAAVDETYAR 250
R+L M +L LG+ +++V LKRWDRV MI+ +A +AV N +D ++ RF +K R + A ++ R
Sbjct: 56 RKLNMRELEKQLVDLGMDRESVAHLKRWDRVQMISHMANMAVTHNTQDAASVSRFTRKPRKSTAGEKKQYR 126
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 109.4 |
| Seed ortholog evalue | 7.5e-22 |
| Seed eggNOG ortholog | 2880.D7FIW7 |
| KEGG ko | ko:K03125 |
| KEGG Pathway | ko03022,map03022 |
| EggNOG free text desc. | negative regulation of protein autoubiquitination |
| EggNOG OGs | COG5179@1,KOG0008@2759 |
| COG Functional cat. | K |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01001,ko03021,ko03036 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 341 |
| Cds size | 225 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929084.7862296-UTR-H-fluviatilis_contig10347:151..200 | 1622929084.7862296-UTR-H-fluviatilis_contig10347:151..200 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10347 152..200 + |
| 1691135176.1237764-UTR-H-fluviatilis_contig10347:151..200 | 1691135176.1237764-UTR-H-fluviatilis_contig10347:151..200 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10347 152..200 + |
| 1622929084.8937914-UTR-H-fluviatilis_contig10347:2118..2185 | 1622929084.8937914-UTR-H-fluviatilis_contig10347:2118..2185 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10347 2119..2185 + |
| 1691135176.1667922-UTR-H-fluviatilis_contig10347:2118..2185 | 1691135176.1667922-UTR-H-fluviatilis_contig10347:2118..2185 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10347 2119..2185 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929084.8409073-CDS-H-fluviatilis_contig10347:200..311 | 1622929084.8409073-CDS-H-fluviatilis_contig10347:200..311 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10347 201..311 + |
| 1691135176.1391487-CDS-H-fluviatilis_contig10347:200..311 | 1691135176.1391487-CDS-H-fluviatilis_contig10347:200..311 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10347 201..311 + |
| 1622929084.8636634-CDS-H-fluviatilis_contig10347:1271..1362 | 1622929084.8636634-CDS-H-fluviatilis_contig10347:1271..1362 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10347 1272..1362 + |
| 1691135176.1470313-CDS-H-fluviatilis_contig10347:1271..1362 | 1691135176.1470313-CDS-H-fluviatilis_contig10347:1271..1362 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10347 1272..1362 + |
| 1622929084.8780882-CDS-H-fluviatilis_contig10347:2095..2118 | 1622929084.8780882-CDS-H-fluviatilis_contig10347:2095..2118 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10347 2096..2118 + |
| 1691135176.156351-CDS-H-fluviatilis_contig10347:2095..2118 | 1691135176.156351-CDS-H-fluviatilis_contig10347:2095..2118 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10347 2096..2118 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig10347.702.1 >prot_H-fluviatilis_contig10347.702.1 ID=prot_H-fluviatilis_contig10347.702.1|Name=mRNA_H-fluviatilis_contig10347.702.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=75bp
MIQLASACEALGIPKDTVKTLKRWDRVHMITELAGVAVVENVKDQSTYPR
FVQKNRPNAAVDETYARRVENSSE* back to topmRNA from alignment at H-fluviatilis_contig10347:152..2185+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-fluviatilis_contig10347.702.1 ID=mRNA_H-fluviatilis_contig10347.702.1|Name=mRNA_H-fluviatilis_contig10347.702.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=2034bp|location=Sequence derived from alignment at H-fluviatilis_contig10347:152..2185+ (Heribaudiella fluviatilis SAG_13_90)
ATGCGTCGGATCACGTGCCGTTACGAAAAAATAGCCTAGGCGGTTGACCA
TGATCCAGCTAGCGTCAGCGTGCGAAGCGTTGGGAATCCCGAAGGACACC
GTGAAGACCTTGAAGCGGTGGGACCGTGTGCACATGATCACGGAGCTGGC
CGGCGTCGCGGTAAGTAACGTCCTACTCTGCCCCCCCCCCTTGATTGGGT
AAGAAGGCGGGGTGGCGCGCCGGGTGGCAGAAACACGCGGAAGTGACGAC
GGCGGTTACCTTGCTCGTTTTGCCTGCCTTTCGGTTGCGCAACACACAGG
ACGGCTTGCCGTGTGCAGGACAAAACTTGCTTTCCCCTATGTCTGCGAAG
TACTTCATCACCGGCGCCTCACGGTGCTACGTTTGTGGGTGCCTTTTTAC
GGGAGTCTAACTTTGTTGCGCGTCACGCGTTGTCTGAGCGCAATCTATCG
TAGTGGAGAGTATGCTTCGTTATTGTTTTTGTCCGGCCGTGTTTCGCCAC
TGGACCTTATGGGGTGTTGATGGGAACGTTAAAATCTCAAAATTTCGTTA
TCGGTTTGTTGTCGCTATTTGGTGCTCTGATTCAGATATGAAACAGTGGA
CGATACAATTCAAAGCCTAAAGGGTTTTTGGCCGTGACCAACCAGTAGTG
CGATTATGCCCGCTTTGCGCACGTACCATACAGCGCTATTTTTACTGCGG
GGAGATTGCGATCTACTCGTCCTCGCGAGCGTTAAAACCCAGCGTCCAAT
CCGTCACTCCGCCACTCCGCCGCTCTTTCAAGTTTCCTAGAAAAGTGGAT
GGGCGGATGGCGCAATGTACACACGTGCCCATTTTTTCTCCCCTGACGCA
ACCATGCCTGCGGCTAGCCCTCCGCCGTTGTCCTTCGCAAACTCTGCTCT
TCCTCCTTGTCGTAGTCGTTGTCGGTCCCTTTTGCTGGTAGAATTGGGAT
TTAAGGGGCAACTCATCACTGCTCCACGTTTCCTGATCTCTCTTCGGCAT
TTGCATTTTGCCTGCAACAAGATGTGCAACGGCGTTCCGTTTACGGATTG
TCGTAGTAATTTGTTATTCTATTAGGTTCTCTTCGTTTTTGTTTTCGTGT
TTATTTACGGGCGACAACAGGTGGTGGAAAACGTGAAGGACCAGAGCACG
TACCCACGGTTCGTACAAAAGAACAGGCCGAACGCTGCAGTGGACGAAAC
CTATGCAAGGCGTGAGTGCCTGTTCCTTTTTTCCTCTTCGAGGACATTTT
TATCCGGTTGCATAATGCATTGCTATTCGGCAGCAATTTTTGCAGTATTT
CCGGTCAATTGTTTTCATTTCGATATGTTGTTTGTGGTGCTTTTAACGTC
AGCGAATATTTACCTCGGGTCTCCTTTGTTGAAGTTGTTAAGTGTTTTGC
TGTCAATCATGGGCAACCAAGTCCGCAAGTTGCTTTCAGGCATCATTGTA
CTCCGCCGGGCGTCACGATGTACGGCCGTCTAGTCAAGCACGATCGACCG
GCCTTTATGTTGGATCAAGCCTTACACCACTTGATGGCCATCATCGATGA
ATAATGACACACCAGCCTCGAATCGGAAAACGGCCTTGAGCGATGCTGGC
TACTCCTACTTCTCATGTTGAGTGAAAGCGGCCTCAGAATCCCACCAATA
GTGTCGATATAAGGCCGCTTCTTGCAAAAAGTAAAAACCACATACTTAAC
ACCGGAATATGTGTAACAAGCGAAAGCTGACCGGCCGTCAGCCGGTCAAA
GCCCTACACCGGGAGGTTTTGACTGTGACATGCCTTTATTCGGTACGCTC
GAGCAAACGAAGGGGCTACCGTAGCTTAGGCTGCCCTCGACTAGTGACCT
CAGGAACTGCTCGTCTGTCCAATAAACATACGTGGAGGGTTCGATGTTTC
GGGTAGCTCGCATCTATCTGATAGCTTCCTTTCCGCTCCGGCAGGTGTAG
AAAATAGCAGCGAGTGAAAAGCAGGAGCACATCCTGTGCTTTTGCTGCCT
CAAACGTTTCCATCGGCGTCGGCAACCATTGTTT back to topCoding sequence (CDS) from alignment at H-fluviatilis_contig10347:152..2185+ >mRNA_H-fluviatilis_contig10347.702.1 ID=mRNA_H-fluviatilis_contig10347.702.1|Name=mRNA_H-fluviatilis_contig10347.702.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=450bp|location=Sequence derived from alignment at H-fluviatilis_contig10347:152..2185+ (Heribaudiella fluviatilis SAG_13_90)
ATGATCCAGCTAGCGTCAGCGTGCGAAGCGTTGGGAATCCCGAAGGACAC
CGTGAAGACCTTGAAGCGGTGGGACCGTGTGCACATGATCACGGAGCTGG
CCGGCGTCGCGATGATCCAGCTAGCGTCAGCGTGCGAAGCGTTGGGAATC
CCGAAGGACACCGTGAAGACCTTGAAGCGGTGGGACCGTGTGCACATGAT
CACGGAGCTGGCCGGCGTCGCGGTGGTGGAAAACGTGAAGGACCAGAGCA
CGTACCCACGGTTCGTACAAAAGAACAGGCCGAACGCTGCAGTGGACGAA
ACCTATGCAAGGCGTGGTGGAAAACGTGAAGGACCAGAGCACGTACCCAC
GGTTCGTACAAAAGAACAGGCCGAACGCTGCAGTGGACGAAACCTATGCA
AGGCGTGTAGAAAATAGCAGCGAGTGAGTGTAGAAAATAGCAGCGAGTGA back to top
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