mRNA_H-fluviatilis_contig103469.701.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103469.701.1
Unique NamemRNA_H-fluviatilis_contig103469.701.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103469.701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103469contigH-fluviatilis_contig103469:35..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size328
Cds size327
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103469.701.1prot_H-fluviatilis_contig103469.701.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103469 36..549 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.7129188-CDS-H-fluviatilis_contig103469:35..1541622929084.7129188-CDS-H-fluviatilis_contig103469:35..154Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103469 36..154 -
1691135176.0937624-CDS-H-fluviatilis_contig103469:35..1541691135176.0937624-CDS-H-fluviatilis_contig103469:35..154Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103469 36..154 -
1622929084.7277915-CDS-H-fluviatilis_contig103469:230..3071622929084.7277915-CDS-H-fluviatilis_contig103469:230..307Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103469 231..307 -
1691135176.101569-CDS-H-fluviatilis_contig103469:230..3071691135176.101569-CDS-H-fluviatilis_contig103469:230..307Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103469 231..307 -
1622929084.7425504-CDS-H-fluviatilis_contig103469:418..5491622929084.7425504-CDS-H-fluviatilis_contig103469:418..549Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103469 419..549 -
1691135176.1098375-CDS-H-fluviatilis_contig103469:418..5491691135176.1098375-CDS-H-fluviatilis_contig103469:418..549Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103469 419..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103469.701.1

>prot_H-fluviatilis_contig103469.701.1 ID=prot_H-fluviatilis_contig103469.701.1|Name=mRNA_H-fluviatilis_contig103469.701.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=109bp
TAALVDEHKKGTGGTSVNSSSTHTSAVALPNHFWATLKPADGVRTASEDN
TGSRYTLQEWHLPALPLHGGLEGPAALRTTSKLVGVDLAQLEHPMATSRQ
VALVSAFPP
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mRNA from alignment at H-fluviatilis_contig103469:35..549-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103469.701.1 ID=mRNA_H-fluviatilis_contig103469.701.1|Name=mRNA_H-fluviatilis_contig103469.701.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=515bp|location=Sequence derived from alignment at H-fluviatilis_contig103469:35..549- (Heribaudiella fluviatilis SAG_13_90)
ACCGCAGCGCTCGTCGATGAGCACAAGAAGGGCACGGGGGGTACCAGCGT
CAACTCCAGCAGCACGCACACGAGTGCCGTGGCGCTGCCCAATCATTTCT
GGGCGACCCTAAAGCCCGCTGATGGCGTGCGGTATGCATTTGGTTTTTGG
AATTTTTGGTGAGAGCCTCTCCTTTTTTGTGTGCGTTTGTTGGTTGAGCA
TGACGTACGCATCCCGTCCGCCCATTACTGCTTTCTTTTCAGAACGGCCT
CCGAAGACAATACGGGCAGTCGATACACCCTGCAAGAATGGCATCTGCCC
GCTCTGCCTTTGCACGGAGGTTCGTTTGCATCAACAGCGCAGCTGTTTTT
ACTAGGTCTGTGGGTGGCGGTGTCGTGTTCGTTTTCTCTGCGCAGGGCTT
GAGGGACCTGCGGCGCTGCGAACCACGTCAAAGTTGGTGGGGGTCGATCT
TGCTCAGCTGGAGCACCCTATGGCCACATCCCGACAAGTTGCTTTGGTGT
CGGCGTTTCCACCCG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig103469:35..549-

>mRNA_H-fluviatilis_contig103469.701.1 ID=mRNA_H-fluviatilis_contig103469.701.1|Name=mRNA_H-fluviatilis_contig103469.701.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=654bp|location=Sequence derived from alignment at H-fluviatilis_contig103469:35..549- (Heribaudiella fluviatilis SAG_13_90)
ACCGCAGCGCTCGTCGATGAGCACAAGAAGGGCACGGGGGGTACCAGCGT
CAACTCCAGCAGCACGCACACGAGTGCCGTGGCGCTGCCCAATCATTTCT
GGGCGACCCTAAAGCCCGCTGATGGCGTGCGACCGCAGCGCTCGTCGATG
AGCACAAGAAGGGCACGGGGGGTACCAGCGTCAACTCCAGCAGCACGCAC
ACGAGTGCCGTGGCGCTGCCCAATCATTTCTGGGCGACCCTAAAGCCCGC
TGATGGCGTGCGAACGGCCTCCGAAGACAATACGGGCAGTCGATACACCC
TGCAAGAATGGCATCTGCCCGCTCTGCCTTTGCACGGAGAACGGCCTCCG
AAGACAATACGGGCAGTCGATACACCCTGCAAGAATGGCATCTGCCCGCT
CTGCCTTTGCACGGAGGGCTTGAGGGACCTGCGGCGCTGCGAACCACGTC
AAAGTTGGTGGGGGTCGATCTTGCTCAGCTGGAGCACCCTATGGCCACAT
CCCGACAAGTTGCTTTGGTGTCGGCGTTTCCACCCGGCTTGAGGGACCTG
CGGCGCTGCGAACCACGTCAAAGTTGGTGGGGGTCGATCTTGCTCAGCTG
GAGCACCCTATGGCCACATCCCGACAAGTTGCTTTGGTGTCGGCGTTTCC
ACCC
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