mRNA_H-fluviatilis_contig103408.696.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103408.696.1
Unique NamemRNA_H-fluviatilis_contig103408.696.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103408.696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103408contigH-fluviatilis_contig103408:5..442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size374
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103408.696.1prot_H-fluviatilis_contig103408.696.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103408 7..442 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929083.5069406-CDS-H-fluviatilis_contig103408:6..691622929083.5069406-CDS-H-fluviatilis_contig103408:6..69Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103408 7..69 -
1691135175.6571968-CDS-H-fluviatilis_contig103408:6..691691135175.6571968-CDS-H-fluviatilis_contig103408:6..69Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103408 7..69 -
1622929083.526973-CDS-H-fluviatilis_contig103408:103..2171622929083.526973-CDS-H-fluviatilis_contig103408:103..217Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103408 104..217 -
1691135175.671777-CDS-H-fluviatilis_contig103408:103..2171691135175.671777-CDS-H-fluviatilis_contig103408:103..217Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103408 104..217 -
1622929083.5444407-CDS-H-fluviatilis_contig103408:247..4421622929083.5444407-CDS-H-fluviatilis_contig103408:247..442Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103408 248..442 -
1691135175.685817-CDS-H-fluviatilis_contig103408:247..4421691135175.685817-CDS-H-fluviatilis_contig103408:247..442Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103408 248..442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103408.696.1

>prot_H-fluviatilis_contig103408.696.1 ID=prot_H-fluviatilis_contig103408.696.1|Name=mRNA_H-fluviatilis_contig103408.696.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=124bp
AAFASPVPARKRASRTSSPIAPAPLDASVPGSDLQPASSLTVEATSLSES
TKQADVLQSPVLSDKEALEHASRGVVRVLEEHYVRNSSLLAAQATSIVIA
LQQARRLTNVSARHLLQMASEYHP
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mRNA from alignment at H-fluviatilis_contig103408:5..442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103408.696.1 ID=mRNA_H-fluviatilis_contig103408.696.1|Name=mRNA_H-fluviatilis_contig103408.696.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=438bp|location=Sequence derived from alignment at H-fluviatilis_contig103408:5..442- (Heribaudiella fluviatilis SAG_13_90)
GCGGCATTCGCCTCTCCCGTGCCGGCGAGAAAACGAGCTTCTCGAACATC
GTCGCCGATTGCTCCCGCTCCTCTGGATGCGTCCGTGCCTGGCTCGGATC
TTCAGCCCGCATCGTCTCTGACTGTTGAGGCAACGTCGTTGTCCGAGTCC
ACCAAGCAAGCCGACGTGTTACAATCGCCAGTGCTGTCTGACAAGGTACT
TCGAGTGTACGTTCGCACGCTGCAGGAGGCATTGGAGCACGCCTCAAGAG
GTGTGGTACGGGTACTGGAGGAGCATTATGTGCGAAACTCGAGTTTGCTG
GCTGCGCAAGCCACATCGATTGTAATTGCACTGCAGCAGGTCTGCCTTTT
GTGAAATCGTAGTGTGCGCTCAGGCCCGTCGTTTAACAAATGTGAGCGCC
CGACACTTGCTTCAAATGGCGTCTGAATACCATCCAGT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig103408:5..442-

>mRNA_H-fluviatilis_contig103408.696.1 ID=mRNA_H-fluviatilis_contig103408.696.1|Name=mRNA_H-fluviatilis_contig103408.696.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=744bp|location=Sequence derived from alignment at H-fluviatilis_contig103408:5..442- (Heribaudiella fluviatilis SAG_13_90)
GCGGCATTCGCCTCTCCCGTGCCGGCGAGAAAACGAGCTTCTCGAACATC
GTCGCCGATTGCTCCCGCTCCTCTGGATGCGTCCGTGCCTGGCTCGGATC
TTCAGCCCGCATCGTCTCTGACTGTTGAGGCAACGTCGTTGTCCGAGTCC
ACCAAGCAAGCCGACGTGTTACAATCGCCAGTGCTGTCTGACAAGGCGGC
ATTCGCCTCTCCCGTGCCGGCGAGAAAACGAGCTTCTCGAACATCGTCGC
CGATTGCTCCCGCTCCTCTGGATGCGTCCGTGCCTGGCTCGGATCTTCAG
CCCGCATCGTCTCTGACTGTTGAGGCAACGTCGTTGTCCGAGTCCACCAA
GCAAGCCGACGTGTTACAATCGCCAGTGCTGTCTGACAAGGAGGCATTGG
AGCACGCCTCAAGAGGTGTGGTACGGGTACTGGAGGAGCATTATGTGCGA
AACTCGAGTTTGCTGGCTGCGCAAGCCACATCGATTGTAATTGCACTGCA
GCAGGAGGCATTGGAGCACGCCTCAAGAGGTGTGGTACGGGTACTGGAGG
AGCATTATGTGCGAAACTCGAGTTTGCTGGCTGCGCAAGCCACATCGATT
GTAATTGCACTGCAGCAGGCCCGTCGTTTAACAAATGTGAGCGCCCGACA
CTTGCTTCAAATGGCGTCTGAATACCATCCAGCCCGTCGTTTAACAAATG
TGAGCGCCCGACACTTGCTTCAAATGGCGTCTGAATACCATCCA
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