mRNA_H-fluviatilis_contig103404.695.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103404.695.1
Unique NamemRNA_H-fluviatilis_contig103404.695.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103404.695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103404contigH-fluviatilis_contig103404:461..791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size269
Cds size267
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103404.695.1prot_H-fluviatilis_contig103404.695.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103404 463..791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929083.4287753-CDS-H-fluviatilis_contig103404:462..4911622929083.4287753-CDS-H-fluviatilis_contig103404:462..491Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103404 463..491 -
1691135175.6323152-CDS-H-fluviatilis_contig103404:462..4911691135175.6323152-CDS-H-fluviatilis_contig103404:462..491Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103404 463..491 -
1622929083.4477317-CDS-H-fluviatilis_contig103404:521..7111622929083.4477317-CDS-H-fluviatilis_contig103404:521..711Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103404 522..711 -
1691135175.6404536-CDS-H-fluviatilis_contig103404:521..7111691135175.6404536-CDS-H-fluviatilis_contig103404:521..711Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103404 522..711 -
1622929083.465568-CDS-H-fluviatilis_contig103404:743..7911622929083.465568-CDS-H-fluviatilis_contig103404:743..791Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103404 744..791 -
1691135175.6483765-CDS-H-fluviatilis_contig103404:743..7911691135175.6483765-CDS-H-fluviatilis_contig103404:743..791Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103404 744..791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103404.695.1

>prot_H-fluviatilis_contig103404.695.1 ID=prot_H-fluviatilis_contig103404.695.1|Name=mRNA_H-fluviatilis_contig103404.695.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=89bp
LTKASKSTGLDQFAIKDDQYECPTCDLQNPKSAAACMACETPNPHYQGAA
SSGGGVSFGDGGVTFGLPSEEGSGVSFGFGASEPPQPIP
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mRNA from alignment at H-fluviatilis_contig103404:461..791-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103404.695.1 ID=mRNA_H-fluviatilis_contig103404.695.1|Name=mRNA_H-fluviatilis_contig103404.695.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=331bp|location=Sequence derived from alignment at H-fluviatilis_contig103404:461..791- (Heribaudiella fluviatilis SAG_13_90)
CTGACTAAGGCTAGCAAATCCACCGGGTTGGATCAGTTTGCCATCAAGGT
GGGTGTGTTGAGTCTGGATCTTTTGCCCAGGACGACCAGTACGAATGCCC
GACCTGCGATTTACAGAATCCTAAATCCGCCGCTGCGTGCATGGCTTGCG
AAACTCCCAATCCGCACTACCAGGGTGCCGCTAGCTCTGGTGGAGGAGTG
TCCTTTGGCGATGGAGGGGTGACGTTCGGCCTTCCGAGCGAGGAGGGCAG
CGGAGTGTCGTTCGGCTTCGGTGGGAGTAATGTGCCGACAGTTACCTCAG
GCGCATCAGAACCTCCTCAACCGATACCTCC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig103404:461..791-

>mRNA_H-fluviatilis_contig103404.695.1 ID=mRNA_H-fluviatilis_contig103404.695.1|Name=mRNA_H-fluviatilis_contig103404.695.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=534bp|location=Sequence derived from alignment at H-fluviatilis_contig103404:461..791- (Heribaudiella fluviatilis SAG_13_90)
CTGACTAAGGCTAGCAAATCCACCGGGTTGGATCAGTTTGCCATCAAGCT
GACTAAGGCTAGCAAATCCACCGGGTTGGATCAGTTTGCCATCAAGGACG
ACCAGTACGAATGCCCGACCTGCGATTTACAGAATCCTAAATCCGCCGCT
GCGTGCATGGCTTGCGAAACTCCCAATCCGCACTACCAGGGTGCCGCTAG
CTCTGGTGGAGGAGTGTCCTTTGGCGATGGAGGGGTGACGTTCGGCCTTC
CGAGCGAGGAGGGCAGCGGAGTGTCGTTCGGCTTCGGACGACCAGTACGA
ATGCCCGACCTGCGATTTACAGAATCCTAAATCCGCCGCTGCGTGCATGG
CTTGCGAAACTCCCAATCCGCACTACCAGGGTGCCGCTAGCTCTGGTGGA
GGAGTGTCCTTTGGCGATGGAGGGGTGACGTTCGGCCTTCCGAGCGAGGA
GGGCAGCGGAGTGTCGTTCGGCTTCGGCGCATCAGAACCTCCTCAACCGA
TACCTGCGCATCAGAACCTCCTCAACCGATACCT
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