mRNA_H-fluviatilis_contig1034.693.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig1034.693.1
Unique NamemRNA_H-fluviatilis_contig1034.693.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: A0A5E4GLN3_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GLN3_PRUDU)

HSP 1 Score: 64.3 bits (155), Expect = 9.560e-10
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 1
Query:   79 STRSTFCCKLKKSLHGLKRAPRNWEVTITQHFEQKG--SNAACVTHVYMLAGTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
            ST   F CKLKKSL+GLK+APR W    T +    G  S+ +  +      G    IL+LYV+D+ IT SS+  I    T L   F M+D+G ++   G
Sbjct:   51 STHPQFVCKLKKSLYGLKQAPRAWNAKFTGYLPTLGFKSSHSDPSLFVQHTGNDIIILLLYVDDIIITGSSDQLIQRVVTNLSEVFEMKDMGQLTYFLG 149          
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: A0A5K1FVY1_9MAGN (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1FVY1_9MAGN)

HSP 1 Score: 64.7 bits (156), Expect = 1.090e-9
Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  100 CKLKKSLHGLKRAPRNWEVTITQHFEQKGSNAACVTHVYMLAGT--STTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
            CKL KSL+GLK+A ++W    + H +Q G   + + H   +  T  +TT L++YV+D+ IT++S   IS  K +L   F M+DLG++    G
Sbjct:   19 CKLHKSLYGLKQASKSWFDRFSHHIQQVGLLRSSLDHSLFMYHTEEATTWLLIYVDDIVITENSSSHISYVKDLLQQEFKMKDLGELRYFLG 110          
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: C6JS24_SORBI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C6JS24_SORBI)

HSP 1 Score: 63.9 bits (154), Expect = 2.290e-9
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 1
Query:   79 STRSTFCCKLKKSLHGLKRAPRNWEVTITQHFEQKG-SNAACVTHVYML-AGTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
            ST  T  CKL KSL+GLK+APR W      H    G S A   T +++   GT T  L+LYV+D+ +T SS+  +      L   F M+DLG +    G
Sbjct:  380 STHPTHVCKLNKSLYGLKQAPRAWHSCFASHLLSLGFSEARSDTSLFIFHRGTETAYLLLYVDDIVLTASSQQLLHRVIEALKKAFAMKDLGPLHHFLG 478          
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: UPI0019234015 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI0019234015)

HSP 1 Score: 63.2 bits (152), Expect = 2.450e-9
Identity = 35/100 (35.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   76 CSTRSTFCCKLKKSLHGLKRAPRNWEVTITQHFEQKGSNAACVTHVYMLA--GTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
            CS   +  C+L KSL+GLK+A R W + +T+   + G   +   ++      G+   +L++YV+DL IT SSE  I+  K +L   F M+DLG++    G
Sbjct:    8 CSQGESKVCRLHKSLYGLKQASRKWNLKLTKALLEAGYMQSKYDYLMFTKQQGSDIVVLLIYVDDLLITGSSEKLIAELKHILNKNFKMKDLGELKCFLG 107          
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: UPI0020177290 (receptor kinase-like protein Xa21 n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=UPI0020177290)

HSP 1 Score: 63.5 bits (153), Expect = 3.110e-9
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   94 FCCKLKKSLHGLKRAPRNW-----EVTITQHFEQKGSNAACVTHVYMLAGTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
            F C+LKKSL+GLK+A R W        +   F+Q  ++ +  T   ++ G+  TI+++YVEDL ITD  E+ I   K  L T+F ++DLG +    G
Sbjct:  122 FVCRLKKSLYGLKQASRQWFAKFSSALLDVGFQQSKADYSLFT---LVRGSLLTIVLVYVEDLVITDDDEVMIQLLKRFLDTQFRIKDLGTLKYFLG 215          
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: A0A834SRJ3_9FABA (Sacsin isoform X2 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834SRJ3_9FABA)

HSP 1 Score: 62.4 bits (150), Expect = 8.540e-9
Identity = 32/93 (34.41%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  100 CKLKKSLHGLKRAPRNWEVTITQHFEQKGSNAACVTHVYML---AGTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
            CKLKKSL+GLK++PR W    T+  +++G + +   H       +G   TIL++YV+D+ +T++ E  +   K +L   F ++DLG +    G
Sbjct: 3949 CKLKKSLYGLKQSPRAWFERFTKVIKKQGYSQSQSDHTLFFKRFSGNLITILIVYVDDIIVTENCETKVERLKGILNIEFEVKDLGPLRYFLG 4041          
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: UPI0016531712 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531712)

HSP 1 Score: 61.2 bits (147), Expect = 1.250e-8
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 1
Query:  100 CKLKKSLHGLKRAPRNWEVTIT----QH-FEQ-KGSNAACVTHVYMLAGTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
            C+LKKSL+GLK+APR W    T    QH F Q K  N+  + H     GT    L++YV+D+ +T SS+L      T L   F M+DLG +S   G
Sbjct:   17 CRLKKSLYGLKQAPRAWYQRFTDFVIQHGFTQCKSDNSLFIYH----HGTDVAYLLIYVDDIILTTSSDLLRQKLMTTLAGEFAMKDLGPLSYFLG 108          
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: A0A151UAM9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UAM9_CAJCA)

HSP 1 Score: 61.6 bits (148), Expect = 1.320e-8
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  100 CKLKKSLHGLKRAPRNWEVTITQHFEQKGSNAA-CVTHVYMLAGTSTTILVL-YVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
            CKL+KSL+GLK+APR W   +       G N+A     ++    TS  IL+L YV+DL I+ SS+  I +  T L TRFP++DLG  +   G
Sbjct:   16 CKLQKSLYGLKQAPRAWFQKLHDTLSVLGFNSAKSDCSLFFRITTSNIILILVYVDDLIISGSSQTEIDSVVTHLQTRFPVRDLGFPNYFLG 107          
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: Q2QRU0_ORYSJ (Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2QRU0_ORYSJ)

HSP 1 Score: 61.6 bits (148), Expect = 1.460e-8
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = 1
Query:   82 TRSTFCCKLKKSLHGLKRAPRNWEVTITQHFEQKG-SNAACVTHVYML-AGTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
            TR    C L KSL+GLK+APR W      +    G + A   T +++L  GT T  L+LYV+D+ +T SS+  +  T + L + F M+DLG +    G
Sbjct:  360 TRPDMVCYLNKSLYGLKQAPRAWYSRFATYLLSIGFTEAKSDTSLFILHRGTDTVYLLLYVDDIVLTASSDRLLQWTSSALQSEFSMKDLGPLHHFLG 457          
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: A0A5N6P148_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P148_9ASTR)

HSP 1 Score: 61.2 bits (147), Expect = 1.900e-8
Identity = 40/119 (33.61%), Postives = 59/119 (49.58%), Query Frame = 1
Query:   25 FVH-HCGVTQLAPRKP-CHCSTRSTFCCKLKKSLHGLKRAPRNWEVTITQHFEQKG-SNAACVTHVYMLA-GTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
            F+H H   T    + P  H  T   F C+LKKSL+GLK+APR W      H   +G  ++ C   +++ +       L+LYV+D+ +T SS   +S    +L   F M DLG +    G
Sbjct:  161 FLHGHLNETVFMHQPPGFHDKTHPNFVCRLKKSLYGLKQAPRAWYTRFASHLLSQGFRSSVCDPSLFIYSQNDQLAYLLLYVDDIVLTASSNALLSHIIAMLSAEFAMTDLGQLHHFLG 279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5E4GLN3_PRUDU9.560e-1039.39PREDICTED: Retrovirus-related Pol poly from (Fragm... [more]
A0A5K1FVY1_9MAGN1.090e-938.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
C6JS24_SORBI2.290e-939.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00192340152.450e-935.00uncharacterized mitochondrial protein AtMg00810-li... [more]
UPI00201772903.110e-938.14receptor kinase-like protein Xa21 n=1 Tax=Rhodamni... [more]
A0A834SRJ3_9FABA8.540e-934.41Sacsin isoform X2 n=1 Tax=Senna tora TaxID=362788 ... [more]
UPI00165317121.250e-841.67uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A151UAM9_CAJCA1.320e-842.39Retrovirus-related Pol polyprotein from transposon... [more]
Q2QRU0_ORYSJ1.460e-837.76Retrotransposon protein, putative, unclassified n=... [more]
A0A5N6P148_9ASTR1.900e-833.61Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig1034contigH-fluviatilis_contig1034:17224..17596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score66.2
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog28532.XP_010525654.1
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3G9AM@35493,3HYXB@3699,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size373
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929083.2568831-CDS-H-fluviatilis_contig1034:17223..175951622929083.2568831-CDS-H-fluviatilis_contig1034:17223..17595Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1034 17224..17595 +
1691135175.5698972-CDS-H-fluviatilis_contig1034:17223..175951691135175.5698972-CDS-H-fluviatilis_contig1034:17223..17595Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1034 17224..17595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig1034.693.1prot_H-fluviatilis_contig1034.693.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig1034 17224..17595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig1034.693.1

>prot_H-fluviatilis_contig1034.693.1 ID=prot_H-fluviatilis_contig1034.693.1|Name=mRNA_H-fluviatilis_contig1034.693.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=124bp
DNSEPNSHFVHHCGVTQLAPRKPCHCSTRSTFCCKLKKSLHGLKRAPRNW
EVTITQHFEQKGSNAACVTHVYMLAGTSTTILVLYVEDLAITDSSELAIS
TTKTVLMTRFPMQDLGDVSLIFGT
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mRNA from alignment at H-fluviatilis_contig1034:17224..17596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig1034.693.1 ID=mRNA_H-fluviatilis_contig1034.693.1|Name=mRNA_H-fluviatilis_contig1034.693.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=373bp|location=Sequence derived from alignment at H-fluviatilis_contig1034:17224..17596+ (Heribaudiella fluviatilis SAG_13_90)
GACAACAGTGAGCCTAACAGCCACTTCGTGCACCACTGTGGAGTCACTCA ACTTGCACCACGGAAGCCCTGCCATTGTTCAACACGGAGCACCTTTTGTT GCAAGCTCAAGAAAAGTCTACATGGGCTAAAACGAGCGCCACGCAATTGG GAAGTAACTATTACGCAGCACTTTGAGCAGAAGGGTTCAAATGCAGCATG TGTGACTCATGTGTATATGTTAGCTGGAACATCCACGACGATCCTGGTAC TATATGTCGAAGACTTAGCGATCACTGATTCATCGGAGCTGGCGATTTCT ACGACGAAGACCGTTCTTATGACGCGTTTTCCCATGCAAGATCTCGGGGA TGTTTCTCTTATTTTCGGAACGC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig1034:17224..17596+

>mRNA_H-fluviatilis_contig1034.693.1 ID=mRNA_H-fluviatilis_contig1034.693.1|Name=mRNA_H-fluviatilis_contig1034.693.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=744bp|location=Sequence derived from alignment at H-fluviatilis_contig1034:17224..17596+ (Heribaudiella fluviatilis SAG_13_90)
GACAACAGTGAGCCTAACAGCCACTTCGTGCACCACTGTGGAGTCACTCA
ACTTGCACCACGGAAGCCCTGCCATTGTTCAACACGGAGCACCTTTTGTT
GCAAGCTCAAGAAAAGTCTACATGGGCTAAAACGAGCGCCACGCAATTGG
GAAGTAACTATTACGCAGCACTTTGAGCAGAAGGGTTCAAATGCAGCATG
TGTGACTCATGTGTATATGTTAGCTGGAACATCCACGACGATCCTGGTAC
TATATGTCGAAGACTTAGCGATCACTGATTCATCGGAGCTGGCGATTTCT
ACGACGAAGACCGTTCTTATGACGCGTTTTCCCATGCAAGATCTCGGGGA
TGTTTCTCTTATTTTCGGAACGGACAACAGTGAGCCTAACAGCCACTTCG
TGCACCACTGTGGAGTCACTCAACTTGCACCACGGAAGCCCTGCCATTGT
TCAACACGGAGCACCTTTTGTTGCAAGCTCAAGAAAAGTCTACATGGGCT
AAAACGAGCGCCACGCAATTGGGAAGTAACTATTACGCAGCACTTTGAGC
AGAAGGGTTCAAATGCAGCATGTGTGACTCATGTGTATATGTTAGCTGGA
ACATCCACGACGATCCTGGTACTATATGTCGAAGACTTAGCGATCACTGA
TTCATCGGAGCTGGCGATTTCTACGACGAAGACCGTTCTTATGACGCGTT
TTCCCATGCAAGATCTCGGGGATGTTTCTCTTATTTTCGGAACG
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