mRNA_H-fluviatilis_contig1034.693.1 (mRNA) Heribaudiella fluviatilis SAG_13_90
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Overview
Homology
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: A0A5E4GLN3_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GLN3_PRUDU) HSP 1 Score: 64.3 bits (155), Expect = 9.560e-10 Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 1
Query: 79 STRSTFCCKLKKSLHGLKRAPRNWEVTITQHFEQKG--SNAACVTHVYMLAGTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
ST F CKLKKSL+GLK+APR W T + G S+ + + G IL+LYV+D+ IT SS+ I T L F M+D+G ++ G
Sbjct: 51 STHPQFVCKLKKSLYGLKQAPRAWNAKFTGYLPTLGFKSSHSDPSLFVQHTGNDIIILLLYVDDIIITGSSDQLIQRVVTNLSEVFEMKDMGQLTYFLG 149
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: A0A5K1FVY1_9MAGN (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1FVY1_9MAGN) HSP 1 Score: 64.7 bits (156), Expect = 1.090e-9 Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = 1
Query: 100 CKLKKSLHGLKRAPRNWEVTITQHFEQKGSNAACVTHVYMLAGT--STTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
CKL KSL+GLK+A ++W + H +Q G + + H + T +TT L++YV+D+ IT++S IS K +L F M+DLG++ G
Sbjct: 19 CKLHKSLYGLKQASKSWFDRFSHHIQQVGLLRSSLDHSLFMYHTEEATTWLLIYVDDIVITENSSSHISYVKDLLQQEFKMKDLGELRYFLG 110
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: C6JS24_SORBI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C6JS24_SORBI) HSP 1 Score: 63.9 bits (154), Expect = 2.290e-9 Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 1
Query: 79 STRSTFCCKLKKSLHGLKRAPRNWEVTITQHFEQKG-SNAACVTHVYML-AGTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
ST T CKL KSL+GLK+APR W H G S A T +++ GT T L+LYV+D+ +T SS+ + L F M+DLG + G
Sbjct: 380 STHPTHVCKLNKSLYGLKQAPRAWHSCFASHLLSLGFSEARSDTSLFIFHRGTETAYLLLYVDDIVLTASSQQLLHRVIEALKKAFAMKDLGPLHHFLG 478
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: UPI0019234015 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI0019234015) HSP 1 Score: 63.2 bits (152), Expect = 2.450e-9 Identity = 35/100 (35.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query: 76 CSTRSTFCCKLKKSLHGLKRAPRNWEVTITQHFEQKGSNAACVTHVYMLA--GTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
CS + C+L KSL+GLK+A R W + +T+ + G + ++ G+ +L++YV+DL IT SSE I+ K +L F M+DLG++ G
Sbjct: 8 CSQGESKVCRLHKSLYGLKQASRKWNLKLTKALLEAGYMQSKYDYLMFTKQQGSDIVVLLIYVDDLLITGSSEKLIAELKHILNKNFKMKDLGELKCFLG 107
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: UPI0020177290 (receptor kinase-like protein Xa21 n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=UPI0020177290) HSP 1 Score: 63.5 bits (153), Expect = 3.110e-9 Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 1
Query: 94 FCCKLKKSLHGLKRAPRNW-----EVTITQHFEQKGSNAACVTHVYMLAGTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
F C+LKKSL+GLK+A R W + F+Q ++ + T ++ G+ TI+++YVEDL ITD E+ I K L T+F ++DLG + G
Sbjct: 122 FVCRLKKSLYGLKQASRQWFAKFSSALLDVGFQQSKADYSLFT---LVRGSLLTIVLVYVEDLVITDDDEVMIQLLKRFLDTQFRIKDLGTLKYFLG 215
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: A0A834SRJ3_9FABA (Sacsin isoform X2 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834SRJ3_9FABA) HSP 1 Score: 62.4 bits (150), Expect = 8.540e-9 Identity = 32/93 (34.41%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 100 CKLKKSLHGLKRAPRNWEVTITQHFEQKGSNAACVTHVYML---AGTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
CKLKKSL+GLK++PR W T+ +++G + + H +G TIL++YV+D+ +T++ E + K +L F ++DLG + G
Sbjct: 3949 CKLKKSLYGLKQSPRAWFERFTKVIKKQGYSQSQSDHTLFFKRFSGNLITILIVYVDDIIVTENCETKVERLKGILNIEFEVKDLGPLRYFLG 4041
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: UPI0016531712 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531712) HSP 1 Score: 61.2 bits (147), Expect = 1.250e-8 Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 1
Query: 100 CKLKKSLHGLKRAPRNWEVTIT----QH-FEQ-KGSNAACVTHVYMLAGTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
C+LKKSL+GLK+APR W T QH F Q K N+ + H GT L++YV+D+ +T SS+L T L F M+DLG +S G
Sbjct: 17 CRLKKSLYGLKQAPRAWYQRFTDFVIQHGFTQCKSDNSLFIYH----HGTDVAYLLIYVDDIILTTSSDLLRQKLMTTLAGEFAMKDLGPLSYFLG 108
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: A0A151UAM9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UAM9_CAJCA) HSP 1 Score: 61.6 bits (148), Expect = 1.320e-8 Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 1
Query: 100 CKLKKSLHGLKRAPRNWEVTITQHFEQKGSNAA-CVTHVYMLAGTSTTILVL-YVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
CKL+KSL+GLK+APR W + G N+A ++ TS IL+L YV+DL I+ SS+ I + T L TRFP++DLG + G
Sbjct: 16 CKLQKSLYGLKQAPRAWFQKLHDTLSVLGFNSAKSDCSLFFRITTSNIILILVYVDDLIISGSSQTEIDSVVTHLQTRFPVRDLGFPNYFLG 107
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: Q2QRU0_ORYSJ (Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2QRU0_ORYSJ) HSP 1 Score: 61.6 bits (148), Expect = 1.460e-8 Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = 1
Query: 82 TRSTFCCKLKKSLHGLKRAPRNWEVTITQHFEQKG-SNAACVTHVYML-AGTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
TR C L KSL+GLK+APR W + G + A T +++L GT T L+LYV+D+ +T SS+ + T + L + F M+DLG + G
Sbjct: 360 TRPDMVCYLNKSLYGLKQAPRAWYSRFATYLLSIGFTEAKSDTSLFILHRGTDTVYLLLYVDDIVLTASSDRLLQWTSSALQSEFSMKDLGPLHHFLG 457
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Match: A0A5N6P148_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P148_9ASTR) HSP 1 Score: 61.2 bits (147), Expect = 1.900e-8 Identity = 40/119 (33.61%), Postives = 59/119 (49.58%), Query Frame = 1
Query: 25 FVH-HCGVTQLAPRKP-CHCSTRSTFCCKLKKSLHGLKRAPRNWEVTITQHFEQKG-SNAACVTHVYMLA-GTSTTILVLYVEDLAITDSSELAISTTKTVLMTRFPMQDLGDVSLIFG 369
F+H H T + P H T F C+LKKSL+GLK+APR W H +G ++ C +++ + L+LYV+D+ +T SS +S +L F M DLG + G
Sbjct: 161 FLHGHLNETVFMHQPPGFHDKTHPNFVCRLKKSLYGLKQAPRAWYTRFASHLLSQGFRSSVCDPSLFIYSQNDQLAYLLLYVDDIVLTASSNALLSHIIAMLSAEFAMTDLGQLHHFLG 279 The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig1034.693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig1034.693.1 >prot_H-fluviatilis_contig1034.693.1 ID=prot_H-fluviatilis_contig1034.693.1|Name=mRNA_H-fluviatilis_contig1034.693.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=124bp DNSEPNSHFVHHCGVTQLAPRKPCHCSTRSTFCCKLKKSLHGLKRAPRNWback to top mRNA from alignment at H-fluviatilis_contig1034:17224..17596+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-fluviatilis_contig1034.693.1 ID=mRNA_H-fluviatilis_contig1034.693.1|Name=mRNA_H-fluviatilis_contig1034.693.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=373bp|location=Sequence derived from alignment at H-fluviatilis_contig1034:17224..17596+ (Heribaudiella fluviatilis SAG_13_90)back to top Coding sequence (CDS) from alignment at H-fluviatilis_contig1034:17224..17596+ >mRNA_H-fluviatilis_contig1034.693.1 ID=mRNA_H-fluviatilis_contig1034.693.1|Name=mRNA_H-fluviatilis_contig1034.693.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=744bp|location=Sequence derived from alignment at H-fluviatilis_contig1034:17224..17596+ (Heribaudiella fluviatilis SAG_13_90)back to top |