mRNA_H-fluviatilis_contig103367.690.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103367.690.1
Unique NamemRNA_H-fluviatilis_contig103367.690.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig103367.690.1 vs. uniprot
Match: A0A085NCX9_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085NCX9_9BILA)

HSP 1 Score: 59.3 bits (142), Expect = 2.050e-10
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 KKQKVMRRPGLEPGSSAWQAPILPLNHRRGCCSKILFDYRHRDYRTS 141
            K+   +RRPG+EPGS AWQA ILPLNH+R     ++F +RHR Y TS
Sbjct:    4 KRDDFLRRPGIEPGSPAWQASILPLNHQRA----VVFSWRHRMYFTS 46          
BLAST of mRNA_H-fluviatilis_contig103367.690.1 vs. uniprot
Match: A0A0V1A5K6_9BILA (Uncharacterized protein n=1 Tax=Trichinella patagoniensis TaxID=990121 RepID=A0A0V1A5K6_9BILA)

HSP 1 Score: 53.5 bits (127), Expect = 1.280e-7
Identity = 25/36 (69.44%), Postives = 27/36 (75.00%), Query Frame = 1
Query:   10 KVMRRPGLEPGSSAWQAPILPLNHRRGCCSKILFDY 117
            K +RRPG+EPGS AWQA ILPLNHRR CC K    Y
Sbjct:   76 KDLRRPGIEPGSPAWQASILPLNHRR-CCDKDKAPY 110          
BLAST of mRNA_H-fluviatilis_contig103367.690.1 vs. uniprot
Match: A0A5K3G8C2_MESCO (Uncharacterized protein n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A5K3G8C2_MESCO)

HSP 1 Score: 50.8 bits (120), Expect = 4.770e-7
Identity = 24/43 (55.81%), Postives = 28/43 (65.12%), Query Frame = 1
Query:   16 MRRPGLEPGSSAWQAPILPLNHRRGCCSKILFDYRHRDYRTSF 144
            MRRPG+EPG  AWQA ILPLNHRR  C        H  ++T+F
Sbjct:    1 MRRPGIEPGPPAWQASILPLNHRRVPCRT------HSTHKTAF 37          
BLAST of mRNA_H-fluviatilis_contig103367.690.1 vs. uniprot
Match: A0A0V1BSR8_TRISP (Uncharacterized protein n=1 Tax=Trichinella spiralis TaxID=6334 RepID=A0A0V1BSR8_TRISP)

HSP 1 Score: 51.6 bits (122), Expect = 9.680e-7
Identity = 27/47 (57.45%), Postives = 30/47 (63.83%), Query Frame = 1
Query:   10 KVMRRPGLEPGSSAWQAPILPLNHRRGCCSKILFDYRHRDYRTSFLP 150
            K +RRPG+EPGS AWQA ILPLNHRR CC          D R+S  P
Sbjct:   97 KGLRRPGIEPGSPAWQASILPLNHRR-CC----------DIRSSKKP 132          
BLAST of mRNA_H-fluviatilis_contig103367.690.1 vs. uniprot
Match: A0A811URD2_CERCA ((Mediterranean fruit fly) hypothetical protein n=1 Tax=Ceratitis capitata TaxID=7213 RepID=A0A811URD2_CERCA)

HSP 1 Score: 48.9 bits (115), Expect = 4.690e-6
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    1 KKQKVMRRPGLEPGSSAWQAPILPLNHRRGCCSKIL 108
            KK++++ RPG+EPG  AWQA ILPLNHR  C  ++L
Sbjct:   64 KKKRILHRPGIEPGPPAWQASILPLNHR--CLLRVL 97          
BLAST of mRNA_H-fluviatilis_contig103367.690.1 vs. uniprot
Match: A0A0M3I1F6_ASCLU (Uncharacterized protein n=1 Tax=Ascaris lumbricoides TaxID=6252 RepID=A0A0M3I1F6_ASCLU)

HSP 1 Score: 48.1 bits (113), Expect = 6.570e-6
Identity = 21/45 (46.67%), Postives = 29/45 (64.44%), Query Frame = 1
Query:   13 VMRRPGLEPGSSAWQAPILPLNHRRGCCSKILFDYRHRDYRTSFL 147
            ++RRPG+ PG  AWQA ILPLNHRR   S+++F       + S +
Sbjct:    1 MLRRPGIGPGPPAWQASILPLNHRRWFRSEVVFPNGCEALKASVI 45          
BLAST of mRNA_H-fluviatilis_contig103367.690.1 vs. uniprot
Match: A0A183T2K8_SCHSO (LIM zinc-binding domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183T2K8_SCHSO)

HSP 1 Score: 49.7 bits (117), Expect = 9.100e-6
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 1
Query:   16 MRRPGLEPGSSAWQAPILPLNHRRGCCSKILFDY 117
            MRRPG+EPG  AWQA ILPLNHRR   + +L  +
Sbjct:  152 MRRPGIEPGPPAWQASILPLNHRRTSSTALLLHF 185          
BLAST of mRNA_H-fluviatilis_contig103367.690.1 vs. uniprot
Match: A0A1R0H3F5_9FUNG (Uncharacterized protein n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0H3F5_9FUNG)

HSP 1 Score: 47.0 bits (110), Expect = 1.260e-5
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 1
Query:   13 VMRRPGLEPGSSAWQAPILPLNHRR 87
             MRRPG+EPGS+AWQA I+PLNH R
Sbjct:   29 TMRRPGIEPGSAAWQAAIIPLNHLR 53          
BLAST of mRNA_H-fluviatilis_contig103367.690.1 vs. uniprot
Match: A0A183V9D0_TOXCA (Uncharacterized protein n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183V9D0_TOXCA)

HSP 1 Score: 47.4 bits (111), Expect = 1.770e-5
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 1
Query:   10 KVMRRPGLEPGSSAWQAPILPLNHRR 87
            K +RRPG+EPG  AWQA ILPLNHRR
Sbjct:   75 KQLRRPGIEPGPPAWQASILPLNHRR 100          
BLAST of mRNA_H-fluviatilis_contig103367.690.1 vs. uniprot
Match: A0A0M3J6C2_ANISI (Uncharacterized protein n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3J6C2_ANISI)

HSP 1 Score: 47.8 bits (112), Expect = 4.040e-5
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 1
Query:   16 MRRPGLEPGSSAWQAPILPLNHRR 87
            MRRPG+EPGS AW+A ILPLNHRR
Sbjct:    1 MRRPGIEPGSLAWEASILPLNHRR 24          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103367.690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A085NCX9_9BILA2.050e-1057.45Uncharacterized protein n=1 Tax=Trichuris suis Tax... [more]
A0A0V1A5K6_9BILA1.280e-769.44Uncharacterized protein n=1 Tax=Trichinella patago... [more]
A0A5K3G8C2_MESCO4.770e-755.81Uncharacterized protein n=1 Tax=Mesocestoides cort... [more]
A0A0V1BSR8_TRISP9.680e-757.45Uncharacterized protein n=1 Tax=Trichinella spiral... [more]
A0A811URD2_CERCA4.690e-658.33(Mediterranean fruit fly) hypothetical protein n=1... [more]
A0A0M3I1F6_ASCLU6.570e-646.67Uncharacterized protein n=1 Tax=Ascaris lumbricoid... [more]
A0A183T2K8_SCHSO9.100e-661.76LIM zinc-binding domain-containing protein n=1 Tax... [more]
A0A1R0H3F5_9FUNG1.260e-576.00Uncharacterized protein n=1 Tax=Smittium mucronatu... [more]
A0A183V9D0_TOXCA1.770e-576.92Uncharacterized protein n=1 Tax=Toxocara canis Tax... [more]
A0A0M3J6C2_ANISI4.040e-583.33Uncharacterized protein n=1 Tax=Anisakis simplex T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103367contigH-fluviatilis_contig103367:448..600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size138
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929082.9654882-UTR-H-fluviatilis_contig103367:447..4621622929082.9654882-UTR-H-fluviatilis_contig103367:447..462Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig103367 448..462 +
1691135175.4726086-UTR-H-fluviatilis_contig103367:447..4621691135175.4726086-UTR-H-fluviatilis_contig103367:447..462Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig103367 448..462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929082.983259-CDS-H-fluviatilis_contig103367:462..6001622929082.983259-CDS-H-fluviatilis_contig103367:462..600Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103367 463..600 +
1691135175.4812095-CDS-H-fluviatilis_contig103367:462..6001691135175.4812095-CDS-H-fluviatilis_contig103367:462..600Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103367 463..600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103367.690.1prot_H-fluviatilis_contig103367.690.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103367 463..600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103367.690.1

>prot_H-fluviatilis_contig103367.690.1 ID=prot_H-fluviatilis_contig103367.690.1|Name=mRNA_H-fluviatilis_contig103367.690.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=46bp
MRRPGLEPGSSAWQAPILPLNHRRGCCSKILFDYRHRDYRTSFLP*
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mRNA from alignment at H-fluviatilis_contig103367:448..600+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103367.690.1 ID=mRNA_H-fluviatilis_contig103367.690.1|Name=mRNA_H-fluviatilis_contig103367.690.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=153bp|location=Sequence derived from alignment at H-fluviatilis_contig103367:448..600+ (Heribaudiella fluviatilis SAG_13_90)
AAAAAGCAAAAAGTAATGCGTCGACCGGGACTCGAACCCGGGTCGAGTGC TTGGCAAGCACCCATTCTACCCCTGAACCATCGACGCGGATGCTGCTCGA AAATTCTGTTTGATTACAGGCACCGAGATTATCGAACATCGTTTCTCCCA TGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig103367:448..600+

>mRNA_H-fluviatilis_contig103367.690.1 ID=mRNA_H-fluviatilis_contig103367.690.1|Name=mRNA_H-fluviatilis_contig103367.690.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=276bp|location=Sequence derived from alignment at H-fluviatilis_contig103367:448..600+ (Heribaudiella fluviatilis SAG_13_90)
ATGCGTCGACCGGGACTCGAACCCGGGTCGAGTGCTTGGCAAGCACCCAT
TCTACCCCTGAACCATCGACGCGGATGCTGCTCGAAAATTCTGTTTGATT
ACAGGCACCGAGATTATCGAACATCGTTTCTCCCATGAATGCGTCGACCG
GGACTCGAACCCGGGTCGAGTGCTTGGCAAGCACCCATTCTACCCCTGAA
CCATCGACGCGGATGCTGCTCGAAAATTCTGTTTGATTACAGGCACCGAG
ATTATCGAACATCGTTTCTCCCATGA
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