mRNA_H-fluviatilis_contig103363.689.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103363.689.1
Unique NamemRNA_H-fluviatilis_contig103363.689.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig103363.689.1 vs. uniprot
Match: A0A0G4J919_PLABS (Phosducin domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J919_PLABS)

HSP 1 Score: 148 bits (373), Expect = 1.240e-41
Identity = 75/163 (46.01%), Postives = 111/163 (68.10%), Query Frame = 1
Query:    1 LGGATEWEDALIKHKIIAAPPKMPTEDEMQLAELEEFQGKTKLALEAKSLKELDDLEDSVAEDTLTALRKKRIAAMKAEAQKNKFGRLVQIGETEYKAEVTEASKSVWVVVHLFVYSRPDCQTLNKYLEAVAAKFKDIKFLKIVAQEAIHNYPETSCPTVLIY 489
            + G TEWEDALI+H II APP++PT++E+ LA  E          E+ SL +LD  ED + +D L+ LR +R+A MKA+++ N+FG+L Q+G+T+YK  +T+AS +  VVVHL  +   DC  LN+ L  VA +F  +KF+++VA EA+  +P  +CPTVL+Y
Sbjct:    1 MAGKTEWEDALIRHGIIEAPPRVPTDEEVALAAQEALAAVN--PYESMSLDQLDAHEDVIDDDDLSRLRAQRLADMKAQSRANRFGQLYQVGQTDYKTAITDASHASPVVVHLMEHGSQDCALLNQCLGEVARRFPAVKFVRVVASEAMEKFPRQNCPTVLVY 161          
BLAST of mRNA_H-fluviatilis_contig103363.689.1 vs. uniprot
Match: A0A7S0DBX2_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DBX2_9EUKA)

HSP 1 Score: 148 bits (373), Expect = 2.250e-41
Identity = 79/162 (48.77%), Postives = 108/162 (66.67%), Query Frame = 1
Query:   13 TEWEDALIKHKIIAAPPKMPTEDEMQLAELEEFQGKTKLALEAKSLKELDDLEDSVAEDTLTALRKKRIAAMKAEAQKNKFGRLVQIGETEYKAEVTEASKS---VWVVVHLFVYSRPDCQTLNKYLEAVAAKFKDIKFLKIVAQEAIHNYPETSCPTVLIY 489
            TEWEDAL+KH II    K PT+DE+ L +LE  Q + K   +  +L +LD+ ED + E  L   R KR+A MKA   KNKFG + Q+ E +YKA+V+EASK    V+V +HLF + + +C+ LN+++  VA KFK +KF KIV  E I N+P++ CPTVLIY
Sbjct:   34 TEWEDALVKHGIIKKTVKGPTQDEIHLKQLEAEQARDKF--DDLTLDDLDEQEDDLDEKILNQYRSKRMAEMKAAMSKNKFGEVYQLSEQDYKAQVSEASKQGDGVYVFLHLFAFGKLECRLLNQHMATVANKFKYVKFCKIVGSECIRNFPDSKCPTVLIY 193          
BLAST of mRNA_H-fluviatilis_contig103363.689.1 vs. uniprot
Match: A0A0H5R9E4_9EUKA (Phosducin domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R9E4_9EUKA)

HSP 1 Score: 138 bits (347), Expect = 1.100e-37
Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 1
Query:    1 LGGATEWEDALIKHKIIAAPPKMPTEDEMQLAELEEFQGKTKLALEAKSLKELDDLEDSVAEDTLTALRKKRIAAMKAEAQKNKFGRLVQIGETEYKAEVTEASKSVWVVVHLFVYSRPDCQTLNKYLEAVAAKFKDIKFLKIVAQEAIHNYPETSCPTVLIY 489
            + G TEWEDALI+H I+ AP + PT++E  +A LE  +      L++ SLK+L + ED + ED+L   R+KR+  +K     N+FG L  +G+T+YK  VT AS   +VVVHL       C  LN+ L  VA +F  +KF+KIVAQEAI  +P  +CPTVL+Y
Sbjct:    8 MAGKTEWEDALIRHGIMQAPERKPTDEEKHMAALEALESVN--PLDSLSLKQLQECEDDIDEDSLEFYRRKRLQELKQLRSVNRFGSLYHVGQTDYKEAVTIASDESFVVVHLMDNGSEACALLNRCLAEVARRFPAVKFVKIVAQEAIAKFPPGNCPTVLVY 168          
BLAST of mRNA_H-fluviatilis_contig103363.689.1 vs. uniprot
Match: A0A151ZK11_9MYCE (Phosducin-like protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZK11_9MYCE)

HSP 1 Score: 138 bits (347), Expect = 1.190e-37
Identity = 81/167 (48.50%), Postives = 105/167 (62.87%), Query Frame = 1
Query:    1 LGGATEWEDALIKHKIIAAPPKMPTEDEM----QLAELEEFQGKTKLALEAKSLKELDDLEDSVAEDTLTALRKKRIAAMKAEAQKNKFGRLVQIGETEYKAEVTEASKSVWVVVHLFVYSRPDCQTLNKYLEAVAAKFKDIKFLKIVAQEAIHNYPETSCPTVLIY 489
            + G TEW+D  IK   + APPK  TEDE+    Q A     Q + K  LE  SL++L        E  L  LRKKRIA MK + ++NKFG L  I E EYK++VTE +K V VVVHLF    P CQ LN++L+ +A KFK  KF+KI ++EAIHNYP+ + PT+L+Y
Sbjct:    1 MSGKTEWDDLQIKLGNMKAPPKQLTEDELFDLIQEAAQYSAQQEKKEKLENASLEDLKXXXXXXXEKVLEELRKKRIAQMKLDKERNKFGELYHISEPEYKSQVTE-TKDVHVVVHLFKNGIPQCQLLNQHLDLLAKKFKATKFVKIRSEEAIHNYPDRNLPTILVY 166          
BLAST of mRNA_H-fluviatilis_contig103363.689.1 vs. uniprot
Match: A0A397J2W6_9GLOM (Phosducin domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397J2W6_9GLOM)

HSP 1 Score: 130 bits (326), Expect = 1.140e-34
Identity = 74/159 (46.54%), Postives = 100/159 (62.89%), Query Frame = 1
Query:   13 TEWEDALIKHKIIAAPPKMPTEDEMQLAELEEFQGKTKLALEAKSLKELDDLEDSVAEDTLTALRKKRIAAMKAEAQKNKFGRLVQIGETEYKAEVTEASKSVWVVVHLFVYSRPDCQTLNKYLEAVAAKFKDIKFLKIVAQEAIHNYPETSCPTVLIY 489
            TEW D +++ K I  P   PTE+E+     ++ + K    LE K+L ELD+LED   E  L   R+KRIA MKAE  + KFG ++QI + ++  EVTEASK VWVVVHLF    P+C+ +N +L  +A K+K+ KFLKI     I NYP+ + PT LIY
Sbjct:    8 TEWND-ILRAKGILPPKPGPTEEEIFEELDKQIKEKQDKHLEDKTLDELDELEDEEDERILLEYRQKRIAEMKAEISREKFGHVMQISKPDFVREVTEASKDVWVVVHLFKDYIPECKLMNIHLATLAEKYKETKFLKITGDHCIPNYPDKNLPTFLIY 165          
BLAST of mRNA_H-fluviatilis_contig103363.689.1 vs. uniprot
Match: UPI000644DD95 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DD95)

HSP 1 Score: 128 bits (321), Expect = 1.040e-33
Identity = 76/165 (46.06%), Postives = 104/165 (63.03%), Query Frame = 1
Query:    7 GATEWEDALIKHKIIAAPPKMPTEDEM----QLAELEEFQGKTKLALEAKSLKELDDLEDSVAEDTLTALRKKRIAAMKAEAQKNKFGRLVQIGETEYKAEVTEASKSVWVVVHLFVYSRPDCQTLNKYLEAVAAKFKDIKFLKIVAQEAIHNYPETSCPTVLIY 489
            G TEW+D  I+   + APPK  TEDE+    Q A +   Q + +  L   SL++L ++ED   E  L  LR+KRIA MKA+A KNKFG   +I E  YK+EVTEA K  +VVVHL     P CQ +N +L+ +A K +  KF+ I ++EAIHNYP+ + PT+L+Y
Sbjct:    9 GKTEWDDIQIRLGNMEAPPKELTEDELFDLIQEAAVYAHQKEKEDKLNNASLEDLHEMEDDEDETVLERLRQKRIAQMKADAVKNKFGEFYEITEPAYKSEVTEA-KDYFVVVHLHKNGIPQCQLVNDHLKVLAKKHRATKFVGIRSEEAIHNYPDRNLPTILVY 172          
BLAST of mRNA_H-fluviatilis_contig103363.689.1 vs. uniprot
Match: A0A397SJQ0_9GLOM (Thioredoxin-like protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SJQ0_9GLOM)

HSP 1 Score: 124 bits (311), Expect = 8.960e-33
Identity = 69/159 (43.40%), Postives = 101/159 (63.52%), Query Frame = 1
Query:   13 TEWEDALIKHKIIAAPPKMPTEDEMQLAELEEFQGKTKLALEAKSLKELDDLEDSVAEDTLTALRKKRIAAMKAEAQKNKFGRLVQIGETEYKAEVTEASKSVWVVVHLFVYSRPDCQTLNKYLEAVAAKFKDIKFLKIVAQEAIHNYPETSCPTVLIY 489
            TEW D +++ + I  P + PTE+E+     +  + K +  LE K+L E   LED   +  L   R+KRIA MKAEA + KFG+L+QI + ++  EVTEAS+ VWV+VHLF    P+C+ +N +L  +A K K  KF+KI+  + I NYP+ + PT+LIY
Sbjct:    8 TEWND-ILRARGILPPKEGPTEEEIFEEMDKAIREKQEKHLEDKTLDEXXXLEDEEDDRILAEYRQKRIAEMKAEASQEKFGQLIQISKPDFIREVTEASQEVWVIVHLFKDPIPECKLMNVHLSTLAEKHKATKFVKIIGDQCIPNYPDKNLPTLLIY 165          
BLAST of mRNA_H-fluviatilis_contig103363.689.1 vs. uniprot
Match: D3BUZ0_POLPP (Phosducin-like protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BUZ0_POLPP)

HSP 1 Score: 123 bits (309), Expect = 5.740e-32
Identity = 77/171 (45.03%), Postives = 104/171 (60.82%), Query Frame = 1
Query:    1 LGGATEWEDALIKHKIIAAPPKMPTEDEM--------QLAELEEFQGKTKLALEAKSLKELDDLEDSVAEDTLTALRKKRIAAMKAEAQKNKFGRLVQIGETEYKAEVTEASKSVWVVVHLFVYSRPDCQTLNKYLEAVAAKFKDIKFLKIVAQEAIHNYPETSCPTVLIY 489
            + G TEW+D  IK    AAPPK  TEDE+        Q A  +E Q K    L+  SL++L        E  L  LR++RIA MKAEA+KNKFG L +I E  YK+EVTE +   +VVV LF    P CQ +N+ L+ +A K +  KF++I ++EAIHNYP+ + PT+L+Y
Sbjct:    1 MSGETEWDDIQIKLGNKAAPPKKLTEDEIFDLIQEAAQYASEKEKQEK----LDNASLEDLXXXXXXXXEQVLEKLRQRRIAQMKAEAEKNKFGELYEISEPAYKSEVTETT-GYFVVVLLFKNGIPQCQLVNEILKELAKKHRATKFVRIRSEEAIHNYPDRNLPTILVY 166          
BLAST of mRNA_H-fluviatilis_contig103363.689.1 vs. uniprot
Match: A0A8H3WYS4_GIGMA (Thioredoxin-like protein n=3 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H3WYS4_GIGMA)

HSP 1 Score: 122 bits (307), Expect = 1.420e-31
Identity = 71/159 (44.65%), Postives = 99/159 (62.26%), Query Frame = 1
Query:   13 TEWEDALIKHKIIAAPPKMPTEDEMQLAELEEFQGKTKLALEAKSLKELDDLEDSVAEDTLTALRKKRIAAMKAEAQKNKFGRLVQIGETEYKAEVTEASKSVWVVVHLFVYSRPDCQTLNKYLEAVAAKFKDIKFLKIVAQEAIHNYPETSCPTVLIY 489
            TEW D +++ + I  P + PTE+++  A  +    K    LE K+L EL        E  L   R+KRIA MKAEA + KFG L+QI + ++  EVT+ASK VWVVVHLF  S P+C+ +N +L  +AAK K  KF+KI+  + I NYP+ + PT+LIY
Sbjct:    8 TEWND-ILRARGILPPKEGPTEEDILEAMDQVIMEKQDKHLEDKTLDELXXXXXXXDERVLFEYRQKRIAEMKAEALRAKFGELMQISKPDFIREVTDASKEVWVVVHLFKDSIPECKLMNAHLATLAAKHKATKFIKIIGDQCIPNYPDKNLPTLLIY 165          
BLAST of mRNA_H-fluviatilis_contig103363.689.1 vs. uniprot
Match: A0A0L0H5B6_SPIPD (Phosducin domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H5B6_SPIPD)

HSP 1 Score: 122 bits (306), Expect = 1.500e-31
Identity = 74/162 (45.68%), Postives = 101/162 (62.35%), Query Frame = 1
Query:   13 TEWEDALIKHKIIAAPPKMPTED---EMQLAELEEFQGKTKLALEAKSLKELDDLEDSVAEDTLTALRKKRIAAMKAEAQKNKFGRLVQIGETEYKAEVTEASKSVWVVVHLFVYSRPDCQTLNKYLEAVAAKFKDIKFLKIVAQEAIHNYPETSCPTVLIY 489
            TEW  AL    I+ A P++ TED   EM    + E  G+   ALE ++L ELD+LED   +  L A R++RIA M A A+  K+G + QI + +Y  EVTEASK  WVV+HLF      C+ +N  LE +AA+++  KFLKIVA + I NYP+ + PT+LIY
Sbjct:    5 TEWNAALRAQGILPAEPEV-TEDQINEMLDQVISEKYGEK--ALEDRNLDELDELEDEEDDRVLEAYRRQRIAEMNAAARLEKYGTVTQISKPDYTVEVTEASKDTWVVLHLFQNHIQACKLINGILERIAARYRSTKFLKIVADQCIPNYPDRNVPTLLIY 163          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103363.689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4J919_PLABS1.240e-4146.01Phosducin domain-containing protein n=1 Tax=Plasmo... [more]
A0A7S0DBX2_9EUKA2.250e-4148.77Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A0H5R9E4_9EUKA1.100e-3745.40Phosducin domain-containing protein (Fragment) n=1... [more]
A0A151ZK11_9MYCE1.190e-3748.50Phosducin-like protein n=1 Tax=Tieghemostelium lac... [more]
A0A397J2W6_9GLOM1.140e-3446.54Phosducin domain-containing protein n=1 Tax=Divers... [more]
UPI000644DD951.040e-3346.06hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A397SJQ0_9GLOM8.960e-3343.40Thioredoxin-like protein n=1 Tax=Glomus cerebrifor... [more]
D3BUZ0_POLPP5.740e-3245.03Phosducin-like protein n=1 Tax=Polysphondylium pal... [more]
A0A8H3WYS4_GIGMA1.420e-3144.65Thioredoxin-like protein n=3 Tax=Gigaspora margari... [more]
A0A0L0H5B6_SPIPD1.500e-3145.68Phosducin domain-containing protein n=2 Tax=Spizel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103363contigH-fluviatilis_contig103363:144..749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue1e-31
Seed eggNOG ortholog227086.JGI_V11_51886
Preferred namePDCL3
GOsGO:0000003,GO:0001932,GO:0001936,GO:0001938,GO:0003674,GO:0003779,GO:0005102,GO:0005126,GO:0005172,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006457,GO:0006725,GO:0006807,GO:0007329,GO:0008092,GO:0008150,GO:0008152,GO:0008284,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009371,GO:0009373,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010941,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019236,GO:0019438,GO:0019954,GO:0022603,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031399,GO:0031683,GO:0032268,GO:0032269,GO:0034404,GO:0034641,GO:0034654,GO:0042127,GO:0042176,GO:0042177,GO:0042221,GO:0042325,GO:0042455,GO:0042981,GO:0043067,GO:0043184,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043281,GO:0044183,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045765,GO:0045766,GO:0045861,GO:0045893,GO:0045935,GO:0045944,GO:0046019,GO:0046116,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050678,GO:0050679,GO:0050730,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051336,GO:0051716,GO:0052547,GO:0052548,GO:0055086,GO:0060255,GO:0065007,GO:0065009,GO:0070851,GO:0070887,GO:0071310,GO:0071444,GO:0071704,GO:0080090,GO:1901135,GO:1901137,GO:1901342,GO:1901360,GO:1901362,GO:1901522,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903508,GO:1904018,GO:2000026,GO:2000058,GO:2000059,GO:2000112,GO:2000116,GO:2001141
EggNOG free text desc.queuosine biosynthetic process
EggNOG OGsKOG3170@1,KOG3170@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size489
Cds size489
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103363.689.1prot_H-fluviatilis_contig103363.689.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103363 144..749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929082.8507364-CDS-H-fluviatilis_contig103363:143..2211622929082.8507364-CDS-H-fluviatilis_contig103363:143..221Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103363 144..221 +
1691135175.415359-CDS-H-fluviatilis_contig103363:143..2211691135175.415359-CDS-H-fluviatilis_contig103363:143..221Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103363 144..221 +
1622929082.8675728-CDS-H-fluviatilis_contig103363:251..3331622929082.8675728-CDS-H-fluviatilis_contig103363:251..333Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103363 252..333 +
1691135175.432396-CDS-H-fluviatilis_contig103363:251..3331691135175.432396-CDS-H-fluviatilis_contig103363:251..333Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103363 252..333 +
1622929082.8833904-CDS-H-fluviatilis_contig103363:359..4631622929082.8833904-CDS-H-fluviatilis_contig103363:359..463Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103363 360..463 +
1691135175.4432185-CDS-H-fluviatilis_contig103363:359..4631691135175.4432185-CDS-H-fluviatilis_contig103363:359..463Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103363 360..463 +
1622929082.896466-CDS-H-fluviatilis_contig103363:492..5781622929082.896466-CDS-H-fluviatilis_contig103363:492..578Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103363 493..578 +
1691135175.453148-CDS-H-fluviatilis_contig103363:492..5781691135175.453148-CDS-H-fluviatilis_contig103363:492..578Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103363 493..578 +
1622929082.9098072-CDS-H-fluviatilis_contig103363:610..7491622929082.9098072-CDS-H-fluviatilis_contig103363:610..749Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103363 611..749 +
1691135175.4631467-CDS-H-fluviatilis_contig103363:610..7491691135175.4631467-CDS-H-fluviatilis_contig103363:610..749Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103363 611..749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103363.689.1

>prot_H-fluviatilis_contig103363.689.1 ID=prot_H-fluviatilis_contig103363.689.1|Name=mRNA_H-fluviatilis_contig103363.689.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=163bp
LGGATEWEDALIKHKIIAAPPKMPTEDEMQLAELEEFQGKTKLALEAKSL
KELDDLEDSVAEDTLTALRKKRIAAMKAEAQKNKFGRLVQIGETEYKAEV
TEASKSVWVVVHLFVYSRPDCQTLNKYLEAVAAKFKDIKFLKIVAQEAIH
NYPETSCPTVLIY
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mRNA from alignment at H-fluviatilis_contig103363:144..749+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103363.689.1 ID=mRNA_H-fluviatilis_contig103363.689.1|Name=mRNA_H-fluviatilis_contig103363.689.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=606bp|location=Sequence derived from alignment at H-fluviatilis_contig103363:144..749+ (Heribaudiella fluviatilis SAG_13_90)
TTAGGTGGTGCAACGGAATGGGAAGATGCATTGATCAAACACAAGATCAT TGCCGCCCCGCCCAAGATGCCCACGGAGGTCCTGTTGCATTGGACGAACT TGCTCTAGGATGAAATGCAACTTGCTGAATTGGAAGAGTTCCAGGGGAAG ACAAAGTTGGCCTTGGAGGCCAAGTCACTGAAAGAACTGGGTTCATTCTG GCGCATGAGTCTGCAGATGATTTGGAGGACTCTGTAGCAGAAGACACGTT GACTGCACTCCGCAAAAAGAGAATCGCTGCTATGAAGGCTGAAGCACAAA AAAACAAGTTTGGTAGGCTGGTACTGAGCGACTCGCCCACCGTCCACAGG TTCAGATCGGAGAAACGGAGTACAAGGCTGAGGTGACGGAAGCATCGAAA TCTGTCTGGGTCGTTGTTCACCTGTTTGTATACAGGTTTGCTTGTTTTGT GTGTGACGATGATTCAGTCGTCCTGATTGTCAAACTCTGAACAAGTATCT TGAAGCGGTTGCCGCCAAGTTCAAGGACATCAAATTTTTGAAGATTGTGG CGCAAGAGGCTATTCACAATTACCCTGAAACCTCTTGCCCGACTGTTTTA ATTTAC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig103363:144..749+

>mRNA_H-fluviatilis_contig103363.689.1 ID=mRNA_H-fluviatilis_contig103363.689.1|Name=mRNA_H-fluviatilis_contig103363.689.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=978bp|location=Sequence derived from alignment at H-fluviatilis_contig103363:144..749+ (Heribaudiella fluviatilis SAG_13_90)
TTAGGTGGTGCAACGGAATGGGAAGATGCATTGATCAAACACAAGATCAT
TGCCGCCCCGCCCAAGATGCCCACGGAGTTAGGTGGTGCAACGGAATGGG
AAGATGCATTGATCAAACACAAGATCATTGCCGCCCCGCCCAAGATGCCC
ACGGAGGATGAAATGCAACTTGCTGAATTGGAAGAGTTCCAGGGGAAGAC
AAAGTTGGCCTTGGAGGCCAAGTCACTGAAAGAACTGGGATGAAATGCAA
CTTGCTGAATTGGAAGAGTTCCAGGGGAAGACAAAGTTGGCCTTGGAGGC
CAAGTCACTGAAAGAACTGGATGATTTGGAGGACTCTGTAGCAGAAGACA
CGTTGACTGCACTCCGCAAAAAGAGAATCGCTGCTATGAAGGCTGAAGCA
CAAAAAAACAAGTTTGGTAGGCTGATGATTTGGAGGACTCTGTAGCAGAA
GACACGTTGACTGCACTCCGCAAAAAGAGAATCGCTGCTATGAAGGCTGA
AGCACAAAAAAACAAGTTTGGTAGGCTGGTTCAGATCGGAGAAACGGAGT
ACAAGGCTGAGGTGACGGAAGCATCGAAATCTGTCTGGGTCGTTGTTCAC
CTGTTTGTATACAGGTTCAGATCGGAGAAACGGAGTACAAGGCTGAGGTG
ACGGAAGCATCGAAATCTGTCTGGGTCGTTGTTCACCTGTTTGTATACAG
TCGTCCTGATTGTCAAACTCTGAACAAGTATCTTGAAGCGGTTGCCGCCA
AGTTCAAGGACATCAAATTTTTGAAGATTGTGGCGCAAGAGGCTATTCAC
AATTACCCTGAAACCTCTTGCCCGACTGTTTTAATTTACTCGTCCTGATT
GTCAAACTCTGAACAAGTATCTTGAAGCGGTTGCCGCCAAGTTCAAGGAC
ATCAAATTTTTGAAGATTGTGGCGCAAGAGGCTATTCACAATTACCCTGA
AACCTCTTGCCCGACTGTTTTAATTTAC
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