mRNA_H-fluviatilis_contig103345.687.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-fluviatilis_contig103345.687.1
Unique Name	mRNA_H-fluviatilis_contig103345.687.1
Type	mRNA
Organism	Heribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)

Homology

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BLAST of mRNA_H-fluviatilis_contig103345.687.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 4.790e-40
Identity = 69/128 (53.91%), Postives = 93/128 (72.66%), Query Frame = -2

Query:  190 RRQRRGRLALTEAPGTRFLLFGKRKKGYWGYDQFEKQVADVVNSLEVLEPDKQLVVEVDHSAGQAKYRGDG-HASNMNARYGGKQTVLRDAIIEEGCLGPVTAKRYWNNGKWSSDFVAGDTTHTVDLK 570
            RR+ +G+  LT +PG RFL +GK K GYWGYD+F++Q+ D ++ L+V EPD Q+VVE+DHS+G  + R DG H  NMN +YGGKQ VLRD ++ EGCLGP  AK Y +NGKWS++F  G   + + LK
Sbjct:  673 RRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQMEDALDVLDVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKYGGKQKVLRDTVMTEGCLGPEEAKMYLSNGKWSTEFTEGAEVYDMKLK 800

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BLAST of mRNA_H-fluviatilis_contig103345.687.1 vs. uniprot
Match: A0A6H5JUX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX8_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 3.260e-38
Identity = 68/130 (52.31%), Postives = 89/130 (68.46%), Query Frame = -2

Query:  184 RRQRRGRLALTEAPGTRFLLFGKRKKGYWGYDQFEKQVADVVNSLEVLEPDKQLVVEVDHSAGQAKYRGDG-HASNMNARYGGKQTVLRDAIIEEGCLGPVTAKRYWNNGKWSSDFVAGDTTHTVDLKHG 570
            RR+ +G+  LT +PG RFL +GK K GYWGYD+F++Q+        V EPD Q+VVE+DHS+G  + R DG H  NMN +YGGKQ VLRD ++ EGCLGP  AK Y +NGKWS++F  G   + + LK G
Sbjct:  522 RRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKYGGKQKVLRDTVMTEGCLGPEEAKMYLSNGKWSTEFTEGAEVYDMKLKVG 651

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BLAST of mRNA_H-fluviatilis_contig103345.687.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.280e-37
Identity = 77/150 (51.33%), Postives = 95/150 (63.33%), Query Frame = -2

Query:  121 GRLALTEAPGTRFLLFGKRKKGYWGYDQFEKQVADVVNSLEVLEPDKQLVVEVDHSAGQAKYRGDG-HASNMNARYGGKQTVLRDAIIEEGCLGPVTAKRYWNNGKWSSDFVAG----DTTHTVDLKHGWARACLLPLPRFMPATPLRRT 555
            G+  LT +PG RFL +GK K GYWGYDQFE+QV DV++ LE ++PD Q+V EVDHS+G  K R DG H SNMN +YGGKQ VLRD+++ E CLGP  AK Y+ NG+WS+ F  G    D   TV        A   P P F    P + T
Sbjct:  338 GKKPLTRSPGLRFLEYGKGKDGYWGYDQFEEQVEDVMDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRDSVMTEECLGPEEAKMYFANGRWSTKFSEGAVCVDQKLTVGQTQTSTFAVGAPPPFFEWDAPRKDT 487

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BLAST of mRNA_H-fluviatilis_contig103345.687.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 9.750e-37
Identity = 68/130 (52.31%), Postives = 88/130 (67.69%), Query Frame = -2

Query:  184 RRQRRGRLALTEAPGTRFLLFGKRKKGYWGYDQFEKQVADVVNSLEVLEPDKQLVVEVDHSAGQAKYRGDG-HASNMNARYGGKQTVLRDAIIEEGCLGPVTAKRYWNNGKWSSDFVAGDTTHTVDLKHG 570
            RR+ +G+  LT +PG  FL +GK K GYWGYD+F++Q+        V EPD Q+VVE+DHS+G  + R DG H  NMN + GGKQTVLRD I+ EGCLGP  AK Y +NGKWS++F  G   + + LK G
Sbjct:  567 RRKEKGKEVLTRSPGLWFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKNGGKQTVLRDTIMTEGCLGPKEAKMYLSNGKWSTEFTEGAEVYDMKLKVG 696

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BLAST of mRNA_H-fluviatilis_contig103345.687.1 vs. uniprot
Match: A0A6H5KQB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB9_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 9.830e-37
Identity = 68/114 (59.65%), Postives = 84/114 (73.68%), Query Frame = -2

Query:  217 GRLALTEAPGTRFLLFGKRKKGYWGYDQFEKQVADVVNSLEVLEPDKQLVVEVDHSAGQAKYRGDG-HASNMNARYGGKQTVLRDAIIEEGCLGPVTAKRYWNNGKWSSDFVAG 555
            G+  LT +PG RFL +GK K GYWGYD FE+QV DVV+ LE ++PD Q+V EVDHS+G  K R DG H SNMN +YGGKQ VLRD+++ EGCLG   AK Y+ NG+WS+ F  G
Sbjct:  183 GKKTLTRSPGLRFLEYGKGKDGYWGYDLFEEQVEDVVDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRDSVMTEGCLGLEEAKMYFANGRWSTKFSEG 296

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BLAST of mRNA_H-fluviatilis_contig103345.687.1 vs. uniprot
Match: A0A6H5JMQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ7_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.600e-35
Identity = 67/114 (58.77%), Postives = 84/114 (73.68%), Query Frame = -2

Query:  217 GRLALTEAPGTRFLLFGKRKKGYWGYDQFEKQVADVVNSLEVLEPDKQLVVEVDHSAGQAKYRGDG-HASNMNARYGGKQTVLRDAIIEEGCLGPVTAKRYWNNGKWSSDFVAG 555
            G+  LT +PG RFL +GK K GYWGYDQFE+QV DV++ LE ++PD Q+V EVDHS+G  K R DG H SNMN +YGGKQ VLR +++ E CLGP  AK Y+ NG+WS+ F  G
Sbjct:  552 GKKTLTRSPGLRFLEYGKGKDGYWGYDQFEEQVEDVMDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRLSVMTEECLGPEEAKIYFANGRWSTKFSEG 665

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BLAST of mRNA_H-fluviatilis_contig103345.687.1 vs. uniprot
Match: A0A6H5L5X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X3_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 4.900e-35
Identity = 66/130 (50.77%), Postives = 89/130 (68.46%), Query Frame = -2

Query:  184 RRQRRGRLALTEAPGTRFLLFGKRKKGYWGYDQFEKQVADVVNSLEVLEPDKQLVVEVDHSAGQAKYRGDG-HASNMNARYGGKQTVLRDAIIEEGCLGPVTAKRYWNNGKWSSDFVAGDTTHTVDLKHG 570
            RR+ +G+  LT+ P  RFL + K + GY GYD+F++Q+ DV++ L V EPD Q+VVE+DHS+G  + R DG H  NMN +YGGKQ VLRD +I E CLGP   K Y +NGKWS++F  G   + + LK G
Sbjct:  472 RRKEKGKEVLTQRPDLRFLQYWKNRDGYRGYDEFKEQIEDVLDVLNVFEPDMQVVVEIDHSSGHTRKREDGLHVGNMNVKYGGKQKVLRDTVITEWCLGPEEGKMYLSNGKWSTEFPEGAEVYDMKLKVG 601

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BLAST of mRNA_H-fluviatilis_contig103345.687.1 vs. uniprot
Match: A0A6H5L6Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.760e-32
Identity = 63/114 (55.26%), Postives = 82/114 (71.93%), Query Frame = -2

Query:  181 FLLFGKRKKGYWGYDQFEKQVADVVNSLEVLEPDKQLVVEVDHSAGQAKYRGDG-HASNMNARYGGKQTVLRDAIIEEGCLGPVTAKRYWNNGKWSSDFVAGDTTHTVDLKHGW 519
            FL +GK K+GYWGYDQFE+QV DV++ LE ++PD Q+V EVDH++G  K R DG + SNMN +Y GKQ VLRD+++ EGCLGP  AK Y+ NGKWS+ F  G   +  +   GW
Sbjct:  444 FLEYGKGKEGYWGYDQFEEQVEDVMDVLEHIDPDMQVVFEVDHASGHGKQREDGLYLSNMNVKYEGKQKVLRDSVMTEGCLGPEEAKMYFANGKWSTKFSEGAVQYLWE--RGW 555

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BLAST of mRNA_H-fluviatilis_contig103345.687.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.680e-31
Identity = 69/148 (46.62%), Postives = 86/148 (58.11%), Query Frame = -2

Query:  217 GRLALTEAPGTRFLLFGKRKKGYWGYDQFEKQVADVVNSLEVLEPDKQLVVEVDHSAG----------------------------------QAKYRGDG-HASNMNARYGGKQTVLRDAIIEEGCLGPVTAKRYWNNGKWSSDFVAG 555
            G+  LT +PG RFL +GK K G WGYDQFE+QV DV++ LE ++PDKQ+V EVDHS+G                                    K R DG H SNMN +YGGKQ VLRD+++ EGCLGP  AK Y+ NG+WS+ F  G
Sbjct:  623 GKKTLTRSPGLRFLEYGKGKDGCWGYDQFEEQVEDVMDVLEHIDPDKQIVFEVDHSSGPDAKPWTPVXXXXXXXXXXXXXXXXXXXXXXXXXHGKQREDGLHVSNMNVKYGGKQKVLRDSVMTEGCLGPEEAKMYFANGRWSTKFREG 770

[Close]

BLAST of mRNA_H-fluviatilis_contig103345.687.1 vs. uniprot
Match: A0A6H5JVH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH4_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.300e-31
Identity = 73/161 (45.34%), Postives = 91/161 (56.52%), Query Frame = -2

Query:  127 RRQRRGRLALTEAPGTRFLLFGKRKK--------GYWGYDQFEKQVADVVNSLEVLEPDKQLVVEVDHSAGQAKYRGDG-HASNMNARYGGKQTVLRDAIIEEGCLGPVTAKRYWNNGKWSSDFVAG----DTTHTVDLKHGWARACLLPLPRFMPATPLR 570
            +RQRR     T A      +   R+K        GYWGYDQFE+QV DV++ LE ++PD Q+V EVDHS+G  K R DG H SNMN +YGGKQ VLRD+++ E CLGP  AK Y+ NG+WS+ F  G    D   TV        A   P P F    P +
Sbjct:   35 KRQRRAGSDATRAEFAMQQMLTSREKRSIERGKDGYWGYDQFEEQVEDVMDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRDSVMTEECLGPEEAKMYFANGRWSTKFSEGAVCVDQKLTVGQTQTSTFAVCAPPPFFEWHAPRK 195

The following BLAST results are available for this feature:

BLAST of mRNA_H-fluviatilis_contig103345.687.1 vs. uniprot

BLAST of mRNA_H-fluviatilis_contig103345.687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
A0A6H5K2T4_9PHAE	4.790e-40	53.91	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUX8_9PHAE	3.260e-38	52.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KXL0_9PHAE	1.280e-37	51.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVN6_9PHAE	9.750e-37	52.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KQB9_9PHAE	9.830e-37	59.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JMQ7_9PHAE	1.600e-35	58.77	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5L5X3_9PHAE	4.900e-35	50.77	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L6Y6_9PHAE	2.760e-32	55.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L611_9PHAE	1.680e-31	46.62	Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVH4_9PHAE	2.300e-31	45.34	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-fluviatilis_contig103345	contig	H-fluviatilis_contig103345:221..791 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_90	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	571
Cds size	426
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-fluviatilis_contig103345.687.1	prot_H-fluviatilis_contig103345.687.1	Heribaudiella fluviatilis SAG_13_90	polypeptide	H-fluviatilis_contig103345 270..695 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929082.0400972-UTR-H-fluviatilis_contig103345:220..269	1622929082.0400972-UTR-H-fluviatilis_contig103345:220..269	Heribaudiella fluviatilis SAG_13_90	UTR	H-fluviatilis_contig103345 221..269 +
1691135175.347991-UTR-H-fluviatilis_contig103345:220..269	1691135175.347991-UTR-H-fluviatilis_contig103345:220..269	Heribaudiella fluviatilis SAG_13_90	UTR	H-fluviatilis_contig103345 221..269 +
1622929082.0572255-UTR-H-fluviatilis_contig103345:695..791	1622929082.0572255-UTR-H-fluviatilis_contig103345:695..791	Heribaudiella fluviatilis SAG_13_90	UTR	H-fluviatilis_contig103345 696..791 +
1691135175.3728938-UTR-H-fluviatilis_contig103345:695..791	1691135175.3728938-UTR-H-fluviatilis_contig103345:695..791	Heribaudiella fluviatilis SAG_13_90	UTR	H-fluviatilis_contig103345 696..791 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929082.0488374-CDS-H-fluviatilis_contig103345:269..695	1622929082.0488374-CDS-H-fluviatilis_contig103345:269..695	Heribaudiella fluviatilis SAG_13_90	CDS	H-fluviatilis_contig103345 270..695 +
1691135175.3627758-CDS-H-fluviatilis_contig103345:269..695	1691135175.3627758-CDS-H-fluviatilis_contig103345:269..695	Heribaudiella fluviatilis SAG_13_90	CDS	H-fluviatilis_contig103345 270..695 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-fluviatilis_contig103345:221..791+
coding sequence from alignment at H-fluviatilis_contig103345:221..791+

protein sequence of mRNA_H-fluviatilis_contig103345.687.1

>prot_H-fluviatilis_contig103345.687.1 ID=prot_H-fluviatilis_contig103345.687.1|Name=mRNA_H-fluviatilis_contig103345.687.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=142bp
MLLCASTDLRFRPLGFPPFVPPHHVLLRGVAGIKRGRGKRHALAHPCFKS
TVCVVSPATKSELHFPLFQYLLAVTGPKHPSSMMASRRTVCFPPYLAFMF
DACPSPRYFACPAEWSTSTTNCLSGSSTSREFTTSATCFSN*

mRNA from alignment at H-fluviatilis_contig103345:221..791+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-fluviatilis_contig103345.687.1 ID=mRNA_H-fluviatilis_contig103345.687.1|Name=mRNA_H-fluviatilis_contig103345.687.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=571bp|location=Sequence derived from alignment at H-fluviatilis_contig103345:221..791+ (Heribaudiella fluviatilis SAG_13_90)
CCCGGACCGCAATCATATCTCCCGTACTCGTACCGGTCTCTTGCGCTTGA
TGCTGCTCTGCGCCAGCACTGACCTCCGTTTCCGACCGCTTGGATTTCCC
CCTTTTGTTCCTCCCCATCACGTCCTCCTCAGGGGCGTCGCAGGCATAAA
ACGGGGGAGGGGCAAAAGACATGCTCTCGCCCACCCATGCTTCAAGTCCA
CCGTGTGCGTCGTATCCCCTGCCACGAAGTCCGAGCTCCACTTCCCGTTG
TTCCAGTACCTCTTGGCCGTCACCGGACCTAAGCACCCCTCCTCTATGAT
GGCATCACGAAGAACCGTCTGCTTCCCCCCGTACCTCGCGTTCATGTTCG
ATGCATGCCCGTCCCCTCGGTATTTTGCTTGTCCCGCTGAGTGGTCTACC
TCAACCACCAACTGCTTGTCCGGTTCTAGCACTTCGAGGGAGTTCACCAC
ATCTGCCACCTGCTTCTCGAACTGATCATACCCCCAGTATCCCTTCTTCC
TCTTTCCGAACAATAGAAAGCGCGTTCCTGGAGCTTCCGTCAGAGCTAGG
CGCCCCCTGCGCTGACGACGC

Coding sequence (CDS) from alignment at H-fluviatilis_contig103345:221..791+

>mRNA_H-fluviatilis_contig103345.687.1 ID=mRNA_H-fluviatilis_contig103345.687.1|Name=mRNA_H-fluviatilis_contig103345.687.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=852bp|location=Sequence derived from alignment at H-fluviatilis_contig103345:221..791+ (Heribaudiella fluviatilis SAG_13_90)
ATGCTGCTCTGCGCCAGCACTGACCTCCGTTTCCGACCGCTTGGATTTCC
CCCTTTTGTTCCTCCCCATCACGTCCTCCTCAGGGGCGTCGCAGGCATAA
AACGGGGGAGGGGCAAAAGACATGCTCTCGCCCACCCATGCTTCAAGTCC
ACCGTGTGCGTCGTATCCCCTGCCACGAAGTCCGAGCTCCACTTCCCGTT
GTTCCAGTACCTCTTGGCCGTCACCGGACCTAAGCACCCCTCCTCTATGA
TGGCATCACGAAGAACCGTCTGCTTCCCCCCGTACCTCGCGTTCATGTTC
GATGCATGCCCGTCCCCTCGGTATTTTGCTTGTCCCGCTGAGTGGTCTAC
CTCAACCACCAACTGCTTGTCCGGTTCTAGCACTTCGAGGGAGTTCACCA
CATCTGCCACCTGCTTCTCGAACTGAATGCTGCTCTGCGCCAGCACTGAC
CTCCGTTTCCGACCGCTTGGATTTCCCCCTTTTGTTCCTCCCCATCACGT
CCTCCTCAGGGGCGTCGCAGGCATAAAACGGGGGAGGGGCAAAAGACATG
CTCTCGCCCACCCATGCTTCAAGTCCACCGTGTGCGTCGTATCCCCTGCC
ACGAAGTCCGAGCTCCACTTCCCGTTGTTCCAGTACCTCTTGGCCGTCAC
CGGACCTAAGCACCCCTCCTCTATGATGGCATCACGAAGAACCGTCTGCT
TCCCCCCGTACCTCGCGTTCATGTTCGATGCATGCCCGTCCCCTCGGTAT
TTTGCTTGTCCCGCTGAGTGGTCTACCTCAACCACCAACTGCTTGTCCGG
TTCTAGCACTTCGAGGGAGTTCACCACATCTGCCACCTGCTTCTCGAACT
GA