mRNA_H-fluviatilis_contig1033.669.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig1033.669.1
Unique NamemRNA_H-fluviatilis_contig1033.669.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig1033.669.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.170e-16
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 3 
Query:   30 VLATFQLLGRGNCFEDMCQFSCMSEALAQKVFHVFCRRFAMELFVDWLRLPTGDDLERVMKQHNQLAFPG 239
            VL T Q LGRGNCF+D+CQ S MS+ +A   FH FC+ FA ELF + + LPTG   + VM  +++L   G
Sbjct:    4 VLTTLQTLGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTG 73
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BLAST of mRNA_H-fluviatilis_contig1033.669.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.560e-15
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 3 
Query:   30 VLATFQLLGRGNCFEDMCQFSCMSEALAQKVFHVFCRRFAMELFVDWLRLPTGDDLERVMKQHNQLAFPG 239
            VL   Q+LGRGNCF+D+CQ S MS+ +A   FH FC+ FA ELF + + LPTG   + VM  +++L   G
Sbjct:    4 VLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTG 73
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BLAST of mRNA_H-fluviatilis_contig1033.669.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.040e-14
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 3 
Query:   21 SS*VLATFQLLGRGNCFEDMCQFSCMSEALAQKVFHVFCRRFAMELFVDWLRLPTGDDLERVMKQHNQLAFPG 239
            S+ +L   Q+LGRGNCF+D+CQ S MS+ +A   FH FC+ FA ELF + + LPTG   + VM  +++L   G
Sbjct:  248 STKILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTG 320
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BLAST of mRNA_H-fluviatilis_contig1033.669.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.890e-14
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 3 
Query:   30 VLATFQLLGRGNCFEDMCQFSCMSEALAQKVFHVFCRRFAMELFVDWLRLPTGDDLERVMKQHNQLAFPG 239
            VL   Q+LGRGNCF D+  FS MS   A++ FH FC  FA  L+  W+RLP G+ L RV   +  L +PG
Sbjct:  211 VLGVLQVLGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEGLRRVESTYRSLGYPG 280
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BLAST of mRNA_H-fluviatilis_contig1033.669.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.200e-13
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 3 
Query:   18 PSS*VLATFQLLGRGNCFEDMCQFSCMSEALAQKVFHVFCRRFAMELFVDWLRLPTGDDLERVMKQHNQLAFPG 239
            P + VLA  Q+L RGN F D+   S +S       FH FC+ FA EL+ +++ LPTG+DL +VM+Q++++ FPG
Sbjct:   80 PHTQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPG 153
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BLAST of mRNA_H-fluviatilis_contig1033.669.1 vs. uniprot
Match: A0A6H5KTA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.970e-13
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 3 
Query:   30 VLATFQLLGRGNCFEDMCQFSCMSEALAQKVFHVFCRRFAMELFVDWLRLPTG 188
            VL   Q+LGRGNCF+D+CQ S MS+ +A   FH FC+ FA ELF + + LPTG
Sbjct:    4 VLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTG 56
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BLAST of mRNA_H-fluviatilis_contig1033.669.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 8.600e-13
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 3 
Query:   30 VLATFQLLGRGNCFEDMCQFSCMSEALAQKVFHVFCRRFAMELFVDWLRLPTGDDLERVMKQHNQLAFPG 239
            VLA  Q+L RGN F D+   S +S       FH FC+ FA EL+ +++ LPTG+DL +VM+Q++++ FPG
Sbjct:  175 VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPG 244
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BLAST of mRNA_H-fluviatilis_contig1033.669.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.310e-12
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 3 
Query:   45 QLLGRGNCFEDMCQFSCMSEALAQKVFHVFCRRFAMELFVDWLRLPTGDDLERVMKQHNQLAFPG 239
            Q+LG+GNCF+D+ Q S MS+++AQ  FH FCR FA E+F + + LPTG  L+ VM   +QL + G
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTG 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig1033.669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5K6N4_9PHAE4.170e-1650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE3.560e-1548.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE1.040e-1446.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE3.890e-1448.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE2.200e-1344.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTA5_9PHAE2.970e-1356.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE8.600e-1345.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE1.310e-1250.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig1033contigH-fluviatilis_contig1033:1711..2051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size341
Cds size264
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929078.325756-UTR-H-fluviatilis_contig1033:1710..17871622929078.325756-UTR-H-fluviatilis_contig1033:1710..1787Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1033 1711..1787 +
1691135174.2476354-UTR-H-fluviatilis_contig1033:1710..17871691135174.2476354-UTR-H-fluviatilis_contig1033:1710..1787Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1033 1711..1787 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929078.343077-CDS-H-fluviatilis_contig1033:1787..20511622929078.343077-CDS-H-fluviatilis_contig1033:1787..2051Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1033 1788..2051 +
1691135174.2703345-CDS-H-fluviatilis_contig1033:1787..20511691135174.2703345-CDS-H-fluviatilis_contig1033:1787..2051Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1033 1788..2051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig1033.669.1prot_H-fluviatilis_contig1033.669.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig1033 1788..2051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig1033.669.1

>prot_H-fluviatilis_contig1033.669.1 ID=prot_H-fluviatilis_contig1033.669.1|Name=mRNA_H-fluviatilis_contig1033.669.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=88bp
MCQFSCMSEALAQKVFHVFCRRFAMELFVDWLRLPTGDDLERVMKQHNQL
AFPGRWVHRRNPCCVDCSPFSHRWIIKAGRGSRLSHIR
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mRNA from alignment at H-fluviatilis_contig1033:1711..2051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig1033.669.1 ID=mRNA_H-fluviatilis_contig1033.669.1|Name=mRNA_H-fluviatilis_contig1033.669.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=341bp|location=Sequence derived from alignment at H-fluviatilis_contig1033:1711..2051+ (Heribaudiella fluviatilis SAG_13_90)
TGAAAATAGGTTTCTTTCCCTCTTCATAGGTGTTGGCGACGTTTCAGCTT
TTGGGTAGAGGGAATTGCTTCGAAGATATGTGTCAGTTTTCGTGTATGAG
CGAGGCATTGGCGCAAAAAGTCTTCCACGTCTTCTGCAGGCGCTTTGCCA
TGGAACTGTTCGTTGACTGGCTTCGGCTGCCGACCGGGGATGACCTCGAA
AGAGTCATGAAGCAGCACAATCAACTTGCCTTTCCCGGGCGATGGGTTCA
CCGACGTAACCCATGTTGCGTGGATTGTTCGCCGTTCTCGCACCGCTGGA
TTATAAAGGCAGGGAGGGGTTCCCGACTCTCGCATATCAGG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig1033:1711..2051+

>mRNA_H-fluviatilis_contig1033.669.1 ID=mRNA_H-fluviatilis_contig1033.669.1|Name=mRNA_H-fluviatilis_contig1033.669.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=528bp|location=Sequence derived from alignment at H-fluviatilis_contig1033:1711..2051+ (Heribaudiella fluviatilis SAG_13_90)
ATGTGTCAGTTTTCGTGTATGAGCGAGGCATTGGCGCAAAAAGTCTTCCA
CGTCTTCTGCAGGCGCTTTGCCATGGAACTGTTCGTTGACTGGCTTCGGC
TGCCGACCGGGGATGACCTCGAAAGAGTCATGAAGCAGCACAATCAACTT
GCCTTTCCCGGGCGATGGGTTCACCGACGTAACCCATGTTGCGTGGATTG
TTCGCCGTTCTCGCACCGCTGGATTATAAAGGCAGGGAGGGGTTCCCGAC
TCTCGCATATCAGGATGTGTCAGTTTTCGTGTATGAGCGAGGCATTGGCG
CAAAAAGTCTTCCACGTCTTCTGCAGGCGCTTTGCCATGGAACTGTTCGT
TGACTGGCTTCGGCTGCCGACCGGGGATGACCTCGAAAGAGTCATGAAGC
AGCACAATCAACTTGCCTTTCCCGGGCGATGGGTTCACCGACGTAACCCA
TGTTGCGTGGATTGTTCGCCGTTCTCGCACCGCTGGATTATAAAGGCAGG
GAGGGGTTCCCGACTCTCGCATATCAGG
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