mRNA_H-fluviatilis_contig103123.651.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103123.651.1
Unique NamemRNA_H-fluviatilis_contig103123.651.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig103123.651.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.650e-35
Identity = 57/144 (39.58%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   19 NTIHIDESWFYVIRDGERVPMFPGEERVGSTKVQHRSHISKLVFICAVSRPDPSRGFDGKIGVWHVCVIKQAQRSTARRSKG-----------------------DEYECGVNIDADWYQEWCTEIFLPEVKDKMPWLKGAEAI 381
            N +H+DESWFY++R+ E+V +F GE+  G  +V H SH+ K++ I A +RPDP+  FDGKIG+W +CVI+ AQRS+ + +                         +EYE    IDA+WY++W  ++ LP +K+KMPWL+    +
Sbjct:  153 NVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVV 296          
BLAST of mRNA_H-fluviatilis_contig103123.651.1 vs. uniprot
Match: I6THG9_PSEMU (Tranposase n=1 Tax=Pseudo-nitzschia multiseries TaxID=37319 RepID=I6THG9_PSEMU)

HSP 1 Score: 84.7 bits (208), Expect = 1.310e-16
Identity = 44/119 (36.97%), Postives = 70/119 (58.82%), Query Frame = 1
Query:   16 FNTIHIDESWFYVIRDGERVPMFPGEERVGSTKVQHRSHISKLVFICAVSRP----DPSRGFDGKIGVWHVCVIKQAQRSTARRSKGDEYECGV-NIDADWYQEWCTEIFLPEVKDKMP 357
            ++TIHIDE WFY+    ++  +  GE    ST  + +  I K++F+CAV+RP    D + GFDGKIG+W   V + AQR++  R +G      + +++A  YQ+   E  LP +++K P
Sbjct:  230 YDTIHIDEKWFYLKTTNQKTYLCSGEPEPHST-CKSKRFIEKVMFLCAVARPRHDADRNAGFDGKIGIWPFVVKEPAQRNSVNRPRGTMVTKNIPSVNAAEYQKMMLEKVLPAIQEKFP 347          
BLAST of mRNA_H-fluviatilis_contig103123.651.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.590e-16
Identity = 42/118 (35.59%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   16 FNTIHIDESWFYVIRDGERVPMFPGEERVGSTKVQHRSHISKLVFICAVSRP----DPSRGFDGKIGVWHVCVIKQAQRSTARRSKGDEYECGVNIDADWYQEWCTEIFLPEVKDKMP 357
            F+ +H+DE WFY+ + G+R   + GE  +   KVQH+SH+ K++F+ AV+RP      SR FDGKIG++   V + AQR+    + G      V ++   Y++    +F P+++ K P
Sbjct:   55 FDFLHLDEKWFYICKQGQRYYFYEGEH-LPIRKVQHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIYPFTVQRAAQRNGRNMAAGTMVTHSVEVNRTLYKKLNNNVF-PDIRAKFP 170          
BLAST of mRNA_H-fluviatilis_contig103123.651.1 vs. uniprot
Match: A0A0W8C4B7_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C4B7_PHYNI)

HSP 1 Score: 80.5 bits (197), Expect = 2.310e-15
Identity = 42/128 (32.81%), Postives = 71/128 (55.47%), Query Frame = 1
Query:    1 MFVSGFNTIHIDESWFYVIRDGERVPMFPGEERVGSTK-----VQHRSHISKLVFICAVSRPDPSRG-FDGKIGVWHVCVIKQAQRSTARRSKGDEYECGVNIDADWYQEWCTEIFLPEVKDKMPWLK 366
            +F   ++T+H+DE WFYV + G++V +  G++           VQ + HI K++F+CAV+RP   RG +DGK+G+W V      QR +  R  G E    +++  + Y+    E  +P +K K  W++
Sbjct:   47 VFAPMYDTVHVDEKWFYVKKIGQKVYLLTGQDGTPCEDAPVQFVQSKRHILKVMFLCAVARP---RGNWDGKVGMWPVVEKYVTQRRSVNRDAGVEELRPISMTREVYRRMLLEDVIPAIKAKWEWVR 171          
BLAST of mRNA_H-fluviatilis_contig103123.651.1 vs. uniprot
Match: A0A485LIJ5_9STRA (Aste57867_21562 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIJ5_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.360e-14
Identity = 37/118 (31.36%), Postives = 64/118 (54.24%), Query Frame = 1
Query:   16 FNTIHIDESWFYVIRDGERVPMFPGEERVGSTKVQHRSHISKLVFICAVSRP----DPSRGFDGKIGVWHVCVIKQAQRSTARRSKGDEYECGVNIDADWYQEWCTEIFLPEVKDKMP 357
            ++T+H+DE WF++    + V   PGE ++     + + H+ K++F+ AV+RP    + +  FDGKIG WH      A+R + RR  G      V++D   Y+    +  +P ++DK P
Sbjct:    2 YDTVHVDEKWFFMSWIKKTVYGAPGE-KIKQPTCKFKQHLLKIMFLSAVARPRLDNETNELFDGKIGTWHFTETVLAKRRSCRRDAGTPIMKSVSVDRTTYKAMLIDKVIPAIRDKWP 118          
BLAST of mRNA_H-fluviatilis_contig103123.651.1 vs. uniprot
Match: A0A485L7X2_9STRA (Aste57867_17524 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7X2_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.580e-14
Identity = 39/118 (33.05%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   16 FNTIHIDESWFYVIRDGERVPMFPGEERVGSTKVQHRSHISKLVFICAVSRP--DPSRG--FDGKIGVWHVCVIKQAQRSTARRSKGDEYECGVNIDADWYQEWCTEIFLPEVKDKMP 357
            ++T+H+DE WF++ R  ++V   PGE ++     + + H+ K++F+ AV+RP  D ++   FDGK+G WH   I  AQR + RR  G      V +  D Y+    +  +P ++ K P
Sbjct:  167 YDTVHVDEKWFFMTRLQKKVYGAPGE-KIKQRSCKSKRHLLKVMFLSAVARPRWDEAKQEWFDGKVGTWHFTEIVPAQRRSRRRDAGTLVMKTVPVTRDAYRAMLVDNVIPAIRSKWP 283          
BLAST of mRNA_H-fluviatilis_contig103123.651.1 vs. uniprot
Match: UPI0006A6D7E0 (uncharacterized protein LOC106302859 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6D7E0)

HSP 1 Score: 71.2 bits (173), Expect = 1.470e-12
Identity = 37/123 (30.08%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    4 FVSGFNTIHIDESWFYVIRDGERVPMFPGEERVGSTKVQHRSHISKLVFICAVSRP----DPSRGFDGKIGVWHVCVIKQAQRSTARRSKGD-EYECGVNIDADWYQEWCTEIFLPEVKDKMP 357
            FV  +N++HIDE WFY+ +  E+  + P EE V     Q ++HI+K++F+ A++RP    + +  F GKIG++    ++ AQR +  R  G  E +   ++  +  + +  E  +P + ++ P
Sbjct:   57 FVDMYNSVHIDEKWFYMTKKTEKYYVVP-EEEVPHRTCQSKNHITKVMFLAAMARPRFDYEGNETFSGKIGIFPFVTLQPAQRRSKNREAGTLERKALTSVKREDIKAYLIEKVIPIIHERWP 178          
BLAST of mRNA_H-fluviatilis_contig103123.651.1 vs. uniprot
Match: A0A024U573_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U573_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.710e-12
Identity = 39/123 (31.71%), Postives = 64/123 (52.03%), Query Frame = 1
Query:   16 FNTIHIDESWFYVIRDGERVPMFPGEERVGSTKVQHRSHISKLVFICAVSRP----DPSRGFDGKIGVWHVCVIKQAQRSTARRSKGDEYECGVNIDADWYQEWCTEIFLPEVKDKMPWLKGA 372
            ++++H+DE WF+  R  +   + PGE+    T  + +  I K++F+ AV+RP    +    FDGKIG WH   +  A+RS+  R  G      V +    Y++   +  +P +K K  W KGA
Sbjct:   58 YDSVHVDEKWFFATRVKQTYYLAPGEKPPHRT-CKSKRFIKKVMFLSAVARPRWNDESGEWFDGKIGTWHFTELVPAERSSRNRPAGTLVTTPVAVTRPVYKDMLVKHVIPAIKTK--WPKGA 177          
BLAST of mRNA_H-fluviatilis_contig103123.651.1 vs. uniprot
Match: A0A6A4YBC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4YBC0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.280e-12
Identity = 39/119 (32.77%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   16 FNTIHIDESWFYVIRDGERVPMFPGEE-RVGSTKVQHRSHISKLVFICAVSRP----DPSRGFDGKIGVWHVCVIKQAQRSTARRSKGDEYECGVNIDADWYQEWCTEIFLPEVKDKMP 357
            ++T+HIDE WF++ R  ++V   PGE+ +  S K +H   +  ++F+ AV+RP    D  + FDGK+G+WH   +  A R + RR  G      V +  D Y+    +  +P ++ K P
Sbjct:  152 YDTMHIDEKWFFMTRLQKKVYGAPGEKTKQRSCKSKH--FLLHVMFLSAVARPRWDDDKQQCFDGKLGIWHFTEVVPAVRRSCRRDAGTPVMKTVAVTRDTYRSMLIDKVIPSIRAKWP 268          
BLAST of mRNA_H-fluviatilis_contig103123.651.1 vs. uniprot
Match: A0A5D6XR23_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR23_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.910e-12
Identity = 41/118 (34.75%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   16 FNTIHIDESWFYVIRDGERVPMFPGEERVGSTKVQHRSHISKLVFICAVSRP--DPSRG--FDGKIGVWHVCVIKQAQRSTARRSKGDEYECGVNIDADWYQEWCTEIFLPEVKDKMP 357
            F+ +HIDE WF V +   RV + P E        QH+SH+ KL+F+CA++RP  DP+ G  FD  IG+W       A RS++ R  G      +  + + Y+       +P V  K P
Sbjct:   25 FDRVHIDEKWFVVNKTKRRVYLTPTEPNP-QRHAQHKSHLPKLMFLCAITRPRVDPATGASFDRGIGIWPFAEEIPAYRSSSNRQAGTLETKPLPANKETYKAMIMTEVVPAVVSKWP 141          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103123.651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.650e-3539.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
I6THG9_PSEMU1.310e-1636.97Tranposase n=1 Tax=Pseudo-nitzschia multiseries Ta... [more]
A0A6H5KWV2_9PHAE2.590e-1635.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0W8C4B7_PHYNI2.310e-1532.81Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A485LIJ5_9STRA1.360e-1431.36Aste57867_21562 protein n=1 Tax=Aphanomyces stella... [more]
A0A485L7X2_9STRA5.580e-1433.05Aste57867_17524 protein n=2 Tax=Aphanomyces stella... [more]
UPI0006A6D7E01.470e-1230.08uncharacterized protein LOC106302859 n=1 Tax=Brass... [more]
A0A024U573_9STRA1.710e-1231.71Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6A4YBC0_9STRA2.280e-1232.77Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A5D6XR23_9STRA2.910e-1234.75Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103123contigH-fluviatilis_contig103123:364..750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue2.7e-11
Seed eggNOG ortholog157072.XP_008870376.1
EggNOG OGs2D1IG@1,2SI8K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size387
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.3402717-CDS-H-fluviatilis_contig103123:363..7501622929076.3402717-CDS-H-fluviatilis_contig103123:363..750Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103123 364..750 -
1691135173.4509873-CDS-H-fluviatilis_contig103123:363..7501691135173.4509873-CDS-H-fluviatilis_contig103123:363..750Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103123 364..750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103123.651.1prot_H-fluviatilis_contig103123.651.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103123 364..750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103123.651.1

>prot_H-fluviatilis_contig103123.651.1 ID=prot_H-fluviatilis_contig103123.651.1|Name=mRNA_H-fluviatilis_contig103123.651.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=129bp
MFVSGFNTIHIDESWFYVIRDGERVPMFPGEERVGSTKVQHRSHISKLVF
ICAVSRPDPSRGFDGKIGVWHVCVIKQAQRSTARRSKGDEYECGVNIDAD
WYQEWCTEIFLPEVKDKMPWLKGAEAIA*
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mRNA from alignment at H-fluviatilis_contig103123:364..750-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103123.651.1 ID=mRNA_H-fluviatilis_contig103123.651.1|Name=mRNA_H-fluviatilis_contig103123.651.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=387bp|location=Sequence derived from alignment at H-fluviatilis_contig103123:364..750- (Heribaudiella fluviatilis SAG_13_90)
ATGTTCGTCAGCGGTTTCAACACGATTCATATCGACGAATCGTGGTTCTA TGTCATTCGCGATGGGGAGAGGGTCCCCATGTTTCCCGGGGAAGAGCGGG TGGGCTCCACCAAGGTTCAACACAGGAGCCACATCTCCAAGCTAGTGTTC ATCTGCGCGGTTTCGCGCCCAGACCCCTCCCGCGGCTTCGACGGCAAGAT CGGGGTATGGCATGTCTGCGTCATCAAGCAGGCACAACGGAGCACCGCCC GCCGCAGCAAGGGTGACGAGTACGAGTGCGGCGTGAACATCGATGCCGAT TGGTACCAGGAGTGGTGTACGGAGATTTTTCTTCCCGAGGTCAAGGACAA GATGCCGTGGCTGAAGGGTGCCGAGGCCATCGCATAG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig103123:364..750-

>mRNA_H-fluviatilis_contig103123.651.1 ID=mRNA_H-fluviatilis_contig103123.651.1|Name=mRNA_H-fluviatilis_contig103123.651.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=774bp|location=Sequence derived from alignment at H-fluviatilis_contig103123:364..750- (Heribaudiella fluviatilis SAG_13_90)
ATGTTCGTCAGCGGTTTCAACACGATTCATATCGACGAATCGTGGTTCTA
TGTCATTCGCGATGGGGAGAGGGTCCCCATGTTTCCCGGGGAAGAGCGGG
TGGGCTCCACCAAGGTTCAACACAGGAGCCACATCTCCAAGCTAGTGTTC
ATCTGCGCGGTTTCGCGCCCAGACCCCTCCCGCGGCTTCGACGGCAAGAT
CGGGGTATGGCATGTCTGCGTCATCAAGCAGGCACAACGGAGCACCGCCC
GCCGCAGCAAGGGTGACGAGTACGAGTGCGGCGTGAACATCGATGCCGAT
TGGTACCAGGAGTGGTGTACGGAGATTTTTCTTCCCGAGGTCAAGGACAA
GATGCCGTGGCTGAAGGGTGCCGAGGCCATCGCATAGATGTTCGTCAGCG
GTTTCAACACGATTCATATCGACGAATCGTGGTTCTATGTCATTCGCGAT
GGGGAGAGGGTCCCCATGTTTCCCGGGGAAGAGCGGGTGGGCTCCACCAA
GGTTCAACACAGGAGCCACATCTCCAAGCTAGTGTTCATCTGCGCGGTTT
CGCGCCCAGACCCCTCCCGCGGCTTCGACGGCAAGATCGGGGTATGGCAT
GTCTGCGTCATCAAGCAGGCACAACGGAGCACCGCCCGCCGCAGCAAGGG
TGACGAGTACGAGTGCGGCGTGAACATCGATGCCGATTGGTACCAGGAGT
GGTGTACGGAGATTTTTCTTCCCGAGGTCAAGGACAAGATGCCGTGGCTG
AAGGGTGCCGAGGCCATCGCATAG
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