mRNA_H-fluviatilis_contig103114.650.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103114.650.1
Unique NamemRNA_H-fluviatilis_contig103114.650.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig103114.650.1 vs. uniprot
Match: D7FVN6_ECTSI (Guanyl nucleotide exchange factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVN6_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 3.080e-53
Identity = 80/105 (76.19%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:    1 QLVSCLYQNPKNLALNRPARQSSVYDNLGADIVVNGDCSGYDSRNCNCTQQDPQGWWEVDLGELANVHQVKIWNRCDEPLDPSLERNLYAKRLFPCWVMVSQEPF 315
            QLV+CLY +PKNLA+ RP+RQSSVYD L A + V+GD SG   R C+CTQQDPQGWWEVDLG+L +VHQVKIWNRCDEP DPS+ERN YAKRLFPCWVM SQEPF
Sbjct:  377 QLVTCLYVSPKNLAMGRPSRQSSVYDGLSAGMAVDGDRSGDHYRKCSCTQQDPQGWWEVDLGQLVHVHQVKIWNRCDEPKDPSMERNFYAKRLFPCWVMASQEPF 481
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BLAST of mRNA_H-fluviatilis_contig103114.650.1 vs. uniprot
Match: A0A6H5JHV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV0_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 5.500e-49
Identity = 78/133 (58.65%), Postives = 89/133 (66.92%), Query Frame = 1 
Query:    1 QLVSCLYQNPKNLALNRPARQSSVYDNLGADIVVNGDCSGYDSRNCNCTQQDPQGWWEVDLGELANVHQVK----------------------------IWNRCDEPLDPSLERNLYAKRLFPCWVMVSQEPF 315
            QLV+CLY +P NLA+ RP+RQSSVYD L A + V+G+ SG   R C+CTQQDPQGWWEVDLG+L +VHQVK                            IWNRCDEP DPS+ERN YAKRLFPCWVM SQEPF
Sbjct:   29 QLVTCLYVSPTNLAIGRPSRQSSVYDGLSAAMAVDGERSGDHYRKCSCTQQDPQGWWEVDLGQLVHVHQVKDDPPFDSINPNSRSDASLHLRCPYLCTKIWNRCDEPKDPSMERNFYAKRLFPCWVMASQEPF 161
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BLAST of mRNA_H-fluviatilis_contig103114.650.1 vs. uniprot
Match: A0A8J2SRF7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRF7_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.210e-36
Identity = 58/104 (55.77%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:    4 LVSCLYQNPKNLALNRPARQSSVYDNLGADIVVNGDCSGYDSRNCNCTQQDPQGWWEVDLGELANVHQVKIWNRCDEPLDPSLERNLYAKRLFPCWVMVSQEPF 315
            L +C+Y  P NLAL RPARQSS Y    A + V+G+C G     C  TQQDPQ WWEVDLG+ AN+H VK+WNR DEP D ++ R+ Y+ RL PCW+M SQ+P+
Sbjct:  944 LAACIYSRPGNLALGRPARQSSCYGGQDAHVAVDGNCDGSSPELCTSTQQDPQAWWEVDLGDFANLHIVKLWNRTDEPPDQTMARDKYSSRLVPCWIMASQKPY 1047
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BLAST of mRNA_H-fluviatilis_contig103114.650.1 vs. uniprot
Match: A0A836CBD3_9STRA (Guanyl nucleotide exchange factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBD3_9STRA)

HSP 1 Score: 134 bits (338), Expect = 8.790e-35
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:    7 VSCLYQNPKNLALNRPARQSSVYDNLGADIVVNGDCSGYDSRNCNCTQQDPQGWWEVDLGELANVHQVKIWNRCDEPLDPSLERNLYAKRLFPCWVMVSQEPF 315
            V+ LYQ P+NLA    ARQSSV++N  A+   NG+  G+ +  C CTQQD Q WWEVDLG  A +  V++WNR DEP DPS   +LYA+RLFPCWVMVS+ P+
Sbjct:  391 VAALYQRPQNLARGCTARQSSVFNNCEAERATNGETGGHGAAACTCTQQDAQAWWEVDLGSEARIDTVRVWNRSDEPDDPSFGADLYARRLFPCWVMVSRTPY 493
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BLAST of mRNA_H-fluviatilis_contig103114.650.1 vs. uniprot
Match: A0A7S2FDN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDN5_9STRA)

HSP 1 Score: 127 bits (320), Expect = 5.010e-33
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:    7 VSCLYQNPKNLALNRPARQSSVYDNLGADIVVNGDCSGYDSRNCNCTQQDPQGWWEVDLGELANVHQVKIWNRCDEPLDPSLERNLYAKRLFPCWVMVSQEPF 315
            V CL++ P NLAL +PA+Q SVY  L A + V+G+  G D   C  T Q+PQ WWEVDLG+ A +H +KIWNR DEP DPS E +++ +RLFP ++M+ QEP+
Sbjct:   69 VRCLFERPINLALGKPAKQCSVYSGLDAYLAVDGNVEGGDPNFCCSTLQEPQPWWEVDLGDFAVIHSIKIWNRTDEPPDPSFESDMFQQRLFPSYLMLGQEPY 171
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BLAST of mRNA_H-fluviatilis_contig103114.650.1 vs. uniprot
Match: A0A7S2D7D3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D7D3_9STRA)

HSP 1 Score: 117 bits (293), Expect = 9.220e-29
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:    7 VSCLYQNPKNLALNRPARQSSVYDNLGADIVVNGDCSGYDSRNCNCTQQDPQGWWEVDLGELANVHQVKIWNRCDEPLDPSLERNLYAKRLFPCWVMVSQEPF 315
            V CLY+  KNLAL   A+QSSVY  L A + V+G+  G DS  C  T ++ Q WW+VDLG+ + +  +KIWNR DEP D S E +L+ KRLFP +V++S++PF
Sbjct:  107 VRCLYEQAKNLALGAYAQQSSVYSGLDAHLAVDGNTEGQDSSCCISTLREGQPWWQVDLGQYSVIQTIKIWNRIDEPPDKSFEADLFQKRLFPSYVIISRDPF 209
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BLAST of mRNA_H-fluviatilis_contig103114.650.1 vs. uniprot
Match: G4Z5F9_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z5F9_PHYSP)

HSP 1 Score: 115 bits (287), Expect = 1.290e-27
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:    1 QLVSCLYQNPKNLALNRPARQSSVYDNLGADIVVNGDCSGYDSRNCNCTQQDPQGWWEVDLGELANVHQVKIWNRCDEPLDPSLERNLYAKRLFPCWVMVSQEPF 315
            +L+ CL+  P NLA  RP RQ ++Y+  G  + VNGD  G     C  T  + + WWEVDLG+ A + ++++WNR DEPL+PS  R  Y+ RLFPCW+ VS+ PF
Sbjct:  458 ELLKCLHVEPYNLAFGRPCRQMTIYNEQGPHLAVNGDIGGT-LATCIHTHLEDKPWWEVDLGQPAVIEKIRLWNRTDEPLNPSKSRAEYSSRLFPCWIFVSEFPF 561
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BLAST of mRNA_H-fluviatilis_contig103114.650.1 vs. uniprot
Match: W2QAT0_PHYPN (Uncharacterized protein n=50 Tax=Phytophthora TaxID=4783 RepID=W2QAT0_PHYPN)

HSP 1 Score: 114 bits (285), Expect = 2.480e-27
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:    1 QLVSCLYQNPKNLALNRPARQSSVYDNLGADIVVNGDCSGYDSRNCNCTQQDPQGWWEVDLGELANVHQVKIWNRCDEPLDPSLERNLYAKRLFPCWVMVSQEPF 315
            +L+ CL+  P NLAL +  RQ S+Y+  G  + VNGD  G     C  TQ + + WWEVDLG+ A + ++++WNR DEPL+PS  R+ Y+ RLFPCWV VS+  F
Sbjct: 1104 ELLKCLHVEPYNLALGKICRQISIYNEQGPQLAVNGDIEGA-LATCTHTQMEDKPWWEVDLGQPAVIEKIRLWNRTDEPLNPSKSRSEYSGRLFPCWVFVSEFAF 1207
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BLAST of mRNA_H-fluviatilis_contig103114.650.1 vs. uniprot
Match: D0NE78_PHYIT (Regulator of chromosome condensation (RCC1), putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NE78_PHYIT)

HSP 1 Score: 112 bits (279), Expect = 1.530e-26
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:    1 QLVSCLYQNPKNLALNRPARQSSVYDNLGADIVVNGDCSGYDSRNCNCTQQDPQGWWEVDLGELANVHQVKIWNRCDEPLDPSLERNLYAKRLFPCWVMVSQEPF 315
            +L+ CL+  P NLAL +P RQ ++Y+  G  + VNG+  G     C  T  + + WWEVDLG+ A + ++++WNR DEPL+PS  R+ Y+ RLFPCW+ VS+  F
Sbjct:  452 ELLRCLHVEPYNLALGKPCRQINIYNEQGPHLAVNGETGGA-LATCIHTHMEDKPWWEVDLGQPAVIEKIRLWNRTDEPLNPSKNRSEYSNRLFPCWIFVSEFAF 555
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BLAST of mRNA_H-fluviatilis_contig103114.650.1 vs. uniprot
Match: A0A833SZ31_PHYIN (Regulator of chromosome condensation (RCC1) repeat n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SZ31_PHYIN)

HSP 1 Score: 112 bits (279), Expect = 1.600e-26
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:    1 QLVSCLYQNPKNLALNRPARQSSVYDNLGADIVVNGDCSGYDSRNCNCTQQDPQGWWEVDLGELANVHQVKIWNRCDEPLDPSLERNLYAKRLFPCWVMVSQEPF 315
            +L+ CL+  P NLAL +P RQ ++Y+  G  + VNG+  G     C  T  + + WWEVDLG+ A + ++++WNR DEPL+PS  R+ Y+ RLFPCW+ VS+  F
Sbjct: 1109 ELLRCLHVEPYNLALGKPCRQINIYNEQGPHLAVNGETGGA-LATCIHTHMEDKPWWEVDLGQPAVIEKIRLWNRTDEPLNPSKNRSEYSNRLFPCWIFVSEFAF 1212
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103114.650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVN6_ECTSI3.080e-5376.19Guanyl nucleotide exchange factor n=1 Tax=Ectocarp... [more]
A0A6H5JHV0_9PHAE5.500e-4958.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2SRF7_9STRA1.210e-3655.77Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A836CBD3_9STRA8.790e-3556.31Guanyl nucleotide exchange factor n=1 Tax=Tribonem... [more]
A0A7S2FDN5_9STRA5.010e-3352.43Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2D7D3_9STRA9.220e-2950.49Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
G4Z5F9_PHYSP1.290e-2746.67Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
W2QAT0_PHYPN2.480e-2747.62Uncharacterized protein n=50 Tax=Phytophthora TaxI... [more]
D0NE78_PHYIT1.530e-2644.76Regulator of chromosome condensation (RCC1), putat... [more]
A0A833SZ31_PHYIN1.600e-2644.76Regulator of chromosome condensation (RCC1) repeat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103114contigH-fluviatilis_contig103114:45..741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue8.8e-45
Seed eggNOG ortholog2880.D7FVN6
Preferred nameHERC1
KEGG koko:K10594
KEGG Pathwayko04120,map04120
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0008150,GO:0012505,GO:0016020,GO:0019899,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051020,GO:0065007,GO:0065009,GO:0098772
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.2801144-CDS-H-fluviatilis_contig103114:44..1461622929076.2801144-CDS-H-fluviatilis_contig103114:44..146Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103114 45..146 -
1691135173.43189-CDS-H-fluviatilis_contig103114:44..1461691135173.43189-CDS-H-fluviatilis_contig103114:44..146Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103114 45..146 -
1622929076.2935803-CDS-H-fluviatilis_contig103114:528..7411622929076.2935803-CDS-H-fluviatilis_contig103114:528..741Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103114 529..741 -
1691135173.4422245-CDS-H-fluviatilis_contig103114:528..7411691135173.4422245-CDS-H-fluviatilis_contig103114:528..741Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103114 529..741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103114.650.1prot_H-fluviatilis_contig103114.650.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103114 45..741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103114.650.1

>prot_H-fluviatilis_contig103114.650.1 ID=prot_H-fluviatilis_contig103114.650.1|Name=mRNA_H-fluviatilis_contig103114.650.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=105bp
QLVSCLYQNPKNLALNRPARQSSVYDNLGADIVVNGDCSGYDSRNCNCTQ
QDPQGWWEVDLGELANVHQVKIWNRCDEPLDPSLERNLYAKRLFPCWVMV
SQEPF
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mRNA from alignment at H-fluviatilis_contig103114:45..741-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103114.650.1 ID=mRNA_H-fluviatilis_contig103114.650.1|Name=mRNA_H-fluviatilis_contig103114.650.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=697bp|location=Sequence derived from alignment at H-fluviatilis_contig103114:45..741- (Heribaudiella fluviatilis SAG_13_90)
CAGTTGGTTTCCTGTCTCTACCAGAACCCGAAAAATCTAGCCCTAAACCG
CCCCGCCCGCCAGAGTAGCGTCTACGACAATCTCGGGGCAGACATTGTCG
TCAATGGCGACTGTTCTGGGTACGACTCGCGCAATTGTAACTGTACGCAG
CAGGATCCGCAGGGTTGGTGGGAGGTAGATTTGGGAGAGCTGGCGAACGT
GCACCAAGTAAAGGTACACATGTCGGGCTACACATGTAGGAGTCGTGGGT
GCTGTTGTTGATTACATTTGCACGTATGTATATATATATATATATATATA
TATGTGTATGGCAGCCATTGTATCCGATTGTTGTTTCCGTGTGTTTGGTT
CGACGTGTTGACGTGAACAATGTATAATCGTAGAGACTAGAAAAGAAACT
TGATGTGCGAAGACAACGACGAAAAGACGAATGATAATCATGTCGACCAG
AAATTACCTTCGTTGCTCGAATGTAGAAAAATAGCCATGCTAATGTCTTG
TATCGCAGAGGTACAGGCGACTCTCAAGCCTCGTTTCATTTCTTTTGTTT
CCCCCTTCCCATCACACCGTCTCTTCCACAACCCAAAAATTCCAGATCTG
GAACCGGTGCGACGAACCGCTGGATCCTTCCTTGGAACGAAACTTGTATG
CCAAGCGACTGTTCCCGTGCTGGGTGATGGTGTCTCAAGAACCGTTC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig103114:45..741-

>mRNA_H-fluviatilis_contig103114.650.1 ID=mRNA_H-fluviatilis_contig103114.650.1|Name=mRNA_H-fluviatilis_contig103114.650.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=630bp|location=Sequence derived from alignment at H-fluviatilis_contig103114:45..741- (Heribaudiella fluviatilis SAG_13_90)
CAGTTGGTTTCCTGTCTCTACCAGAACCCGAAAAATCTAGCCCTAAACCG
CCCCGCCCGCCAGAGTAGCGTCTACGACAATCTCGGGGCAGACATTGTCG
TCAATGGCGACTGTTCTGGGTACGACTCGCGCAATTGTAACTGTACGCAG
CAGGATCCGCAGGGTTGGTGGGAGGTAGATTTGGGAGAGCTGGCGAACGT
GCACCAAGTAAAGCAGTTGGTTTCCTGTCTCTACCAGAACCCGAAAAATC
TAGCCCTAAACCGCCCCGCCCGCCAGAGTAGCGTCTACGACAATCTCGGG
GCAGACATTGTCGTCAATGGCGACTGTTCTGGGTACGACTCGCGCAATTG
TAACTGTACGCAGCAGGATCCGCAGGGTTGGTGGGAGGTAGATTTGGGAG
AGCTGGCGAACGTGCACCAAGTAAAGATCTGGAACCGGTGCGACGAACCG
CTGGATCCTTCCTTGGAACGAAACTTGTATGCCAAGCGACTGTTCCCGTG
CTGGGTGATGGTGTCTCAAGAACCGTTCATCTGGAACCGGTGCGACGAAC
CGCTGGATCCTTCCTTGGAACGAAACTTGTATGCCAAGCGACTGTTCCCG
TGCTGGGTGATGGTGTCTCAAGAACCGTTC
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