mRNA_H-fluviatilis_contig10311.649.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10311.649.1
Unique NamemRNA_H-fluviatilis_contig10311.649.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig10311.649.1 vs. uniprot
Match: X6NSS2_RETFI (Ras-GAP domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NSS2_RETFI)

HSP 1 Score: 94.4 bits (233), Expect = 1.130e-22
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 PLKGKRQLYEDLFYLLQSRPRYFAKLARLVQAKDVPNFVQTVVFDMYGDQYDTREERLLLALFRRVLKIEIDATTDKG 234
            PL+GK+  YE L ++LQ  P+Y A LA  V+ KDV +FV+TVVFDMYGDQYD REERLLL LF+ VL+   D   D G
Sbjct:   22 PLEGKKGQYEKLLHVLQKEPKYLACLAHHVETKDVSDFVKTVVFDMYGDQYDNREERLLLILFQTVLQKSFDEADDIG 99          
BLAST of mRNA_H-fluviatilis_contig10311.649.1 vs. uniprot
Match: X6NGM8_RETFI (Ras-GAP domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NGM8_RETFI)

HSP 1 Score: 95.1 bits (235), Expect = 4.600e-21
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 PLKGKRQLYEDLFYLLQSRPRYFAKLARLVQAKDVPNFVQTVVFDMYGDQYDTREERLLLALFRRVLKIEIDATTDKG 234
            PL+GK+  YE L ++LQ  P+Y A LA  V+ KDV +FV+TVVFDMYGDQYD REERLLL LF+ VL+   D   D G
Sbjct:   17 PLEGKKAQYEKLLHVLQKEPKYLACLAHHVETKDVSDFVKTVVFDMYGDQYDNREERLLLTLFQTVLQKSFDQADDIG 94          
BLAST of mRNA_H-fluviatilis_contig10311.649.1 vs. uniprot
Match: A0A0H5R9X1_9EUKA (Ras-GAP domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R9X1_9EUKA)

HSP 1 Score: 90.9 bits (224), Expect = 1.420e-19
Identity = 43/74 (58.11%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   13 KRQLYEDLFYLLQSRPRYFAKLARLVQAKDVPNFVQTVVFDMYGDQYDTREERLLLALFRRVLKIEIDATTDKG 234
            KR  YE + Y LQS P YFAKLAR+V    + +FVQTVVFD YGDQYDTR+ERLLL+LF  +L  E  +    G
Sbjct:  163 KRAAYEHVLYTLQSEPIYFAKLARVVSGNQIQSFVQTVVFDFYGDQYDTRDERLLLSLFGHILHAEFSSALSMG 236          
BLAST of mRNA_H-fluviatilis_contig10311.649.1 vs. uniprot
Match: A0A3P3Y0H6_PLABS (Ras-GAP domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y0H6_PLABS)

HSP 1 Score: 88.6 bits (218), Expect = 9.170e-19
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   16 RQLYEDLFYLLQSRPRYFAKLARLVQAKDVPNFVQTVVFDMYGDQYDTREERLLLALFRRVLKIEIDATTDKG 234
            R  YE++ Y LQ+ P +FA LARLV   +V  FVQTVVFD YGDQYDTR+ERLLL+LF  VL+ E  A  D G
Sbjct:  149 RTAYENVLYTLQNDPVHFAILARLVTGSEVQQFVQTVVFDFYGDQYDTRDERLLLSLFGHVLRAEFAAAQDMG 221          
BLAST of mRNA_H-fluviatilis_contig10311.649.1 vs. uniprot
Match: A0A507BZ55_9FUNG (Ras-GAP domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BZ55_9FUNG)

HSP 1 Score: 88.2 bits (217), Expect = 1.250e-18
Identity = 40/78 (51.28%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 PLKGKRQLYEDLFYLLQSRPRYFAKLARLVQAKDVPNFVQTVVFDMYGDQYDTREERLLLALFRRVLKIEIDATTDKG 234
            P + +RQLY +LF+LLQS PRY A + RLV   ++ N +QTV+F +YG+QY++REE LLL++F+ VL  + +A TD G
Sbjct:  184 PDERRRQLYGNLFFLLQSEPRYIATMTRLVSMAEIDNLLQTVMFTIYGNQYESREEYLLLSMFQNVLAAQFEAATDFG 261          
BLAST of mRNA_H-fluviatilis_contig10311.649.1 vs. uniprot
Match: A0A507D519_9FUNG (Ras-GAP domain-containing protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507D519_9FUNG)

HSP 1 Score: 88.2 bits (217), Expect = 1.260e-18
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 PLKGKRQLYEDLFYLLQSRPRYFAKLARLVQAKDVPNFVQTVVFDMYGDQYDTREERLLLALFRRVLKIEIDATTDKG 234
            P + +RQLY +LF+LLQS PRY A L RLV   ++   +QTV+F +YG+QY++REE LLL++F+ VL  + DA TD G
Sbjct:  290 PDERRRQLYGNLFFLLQSEPRYIATLTRLVSLAEIDTLLQTVMFTIYGNQYESREEYLLLSMFQNVLAAQFDAATDFG 367          
BLAST of mRNA_H-fluviatilis_contig10311.649.1 vs. uniprot
Match: A0A1Y1XLN8_9FUNG (Putative ras GTPase-activating protein sar1 n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1XLN8_9FUNG)

HSP 1 Score: 87.4 bits (215), Expect = 2.330e-18
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 PLKGKRQLYEDLFYLLQSRPRYFAKLARLVQAKDVPNFVQTVVFDMYGDQYDTREERLLLALFRRVLKIEIDATTDKG 234
            P   KRQLY +LFY+LQS P+Y A L RLV   ++   +QTV+F +YG+QY++REE LLL +FR VL  + +++TD G
Sbjct:  139 PDDRKRQLYGNLFYILQSEPKYIASLTRLVSLSEIDTLLQTVMFTIYGNQYESREEHLLLMMFRDVLAAQFESSTDFG 216          
BLAST of mRNA_H-fluviatilis_contig10311.649.1 vs. uniprot
Match: A0A4P9WL58_9FUNG (Rho GTPase activation protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WL58_9FUNG)

HSP 1 Score: 87.0 bits (214), Expect = 2.430e-18
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 PLKGKRQLYEDLFYLLQSRPRYFAKLARLVQAKDVPNFVQTVVFDMYGDQYDTREERLLLALFRRVLKIEIDATTDKG 234
            P   KRQLY +LF+LLQS PR+ A LARLV   ++   +QTV+F +YG+QYD+REE LLL++F+ VL  + D+ T+ G
Sbjct:   84 PDDRKRQLYGNLFFLLQSEPRHIAALARLVTLSEIDTLLQTVMFTIYGNQYDSREEYLLLSMFQNVLAAQFDSATEFG 161          
BLAST of mRNA_H-fluviatilis_contig10311.649.1 vs. uniprot
Match: A0A1Y3NXN7_PIRSE (Ras-GAP domain-containing protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NXN7_PIRSE)

HSP 1 Score: 85.5 bits (210), Expect = 5.580e-18
Identity = 38/78 (48.72%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 PLKGKRQLYEDLFYLLQSRPRYFAKLARLVQAKDVPNFVQTVVFDMYGDQYDTREERLLLALFRRVLKIEIDATTDKG 234
            P   KRQLY +LF++LQS P++ A LARLV   ++   +QTV+F +YG+QY++REE LLL +F+ VL  + +++TD G
Sbjct:  139 PDDRKRQLYGNLFFMLQSEPKHIASLARLVSLSEIDTLLQTVMFTIYGNQYESREEHLLLTMFQNVLSAQFESSTDFG 216          
BLAST of mRNA_H-fluviatilis_contig10311.649.1 vs. uniprot
Match: A0A1Y2DJD1_9FUNG (Rho GTPase activation protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2DJD1_9FUNG)

HSP 1 Score: 85.1 bits (209), Expect = 1.510e-17
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 PLKGKRQLYEDLFYLLQSRPRYFAKLARLVQAKDVPNFVQTVVFDMYGDQYDTREERLLLALFRRVLKIEIDATTDKG 234
            P   KRQLY +LF+LLQS P++ A L RLV   ++   +QTV+F +YG+QY++REE LLL +F+ VL  + D+ TD G
Sbjct:  138 PDDRKRQLYGNLFFLLQSEPKHIAMLTRLVSLSEIDTLLQTVMFTLYGNQYESREEYLLLTMFQNVLSAQFDSATDFG 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10311.649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
X6NSS2_RETFI1.130e-2258.97Ras-GAP domain-containing protein n=1 Tax=Reticulo... [more]
X6NGM8_RETFI4.600e-2158.97Ras-GAP domain-containing protein n=1 Tax=Reticulo... [more]
A0A0H5R9X1_9EUKA1.420e-1958.11Ras-GAP domain-containing protein n=1 Tax=Spongosp... [more]
A0A3P3Y0H6_PLABS9.170e-1960.27Ras-GAP domain-containing protein n=2 Tax=Plasmodi... [more]
A0A507BZ55_9FUNG1.250e-1851.28Ras-GAP domain-containing protein n=1 Tax=Synchytr... [more]
A0A507D519_9FUNG1.260e-1852.56Ras-GAP domain-containing protein n=2 Tax=Synchytr... [more]
A0A1Y1XLN8_9FUNG2.330e-1851.28Putative ras GTPase-activating protein sar1 n=3 Ta... [more]
A0A4P9WL58_9FUNG2.430e-1852.56Rho GTPase activation protein (Fragment) n=1 Tax=B... [more]
A0A1Y3NXN7_PIRSE5.580e-1848.72Ras-GAP domain-containing protein n=1 Tax=Piromyce... [more]
A0A1Y2DJD1_9FUNG1.510e-1750.00Rho GTPase activation protein n=1 Tax=Neocallimast... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10311contigH-fluviatilis_contig10311:1..462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score85.9
Seed ortholog evalue9.2e-15
Seed eggNOG ortholog109760.SPPG_03837T0
Preferred namegap1
KEGG koko:K05767
KEGG Pathwayko04810,map04810
GOsGO:0000003,GO:0000746,GO:0000747,GO:0000753,GO:0000767,GO:0000902,GO:0000935,GO:0003006,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005937,GO:0005938,GO:0007154,GO:0007165,GO:0008047,GO:0008150,GO:0009653,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0016043,GO:0019953,GO:0022414,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023057,GO:0030234,GO:0030428,GO:0030695,GO:0031136,GO:0031137,GO:0031139,GO:0032005,GO:0032153,GO:0032155,GO:0032502,GO:0032989,GO:0042995,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0043900,GO:0043902,GO:0044093,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0044703,GO:0044764,GO:0046578,GO:0046580,GO:0046999,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051128,GO:0051285,GO:0051286,GO:0051336,GO:0051345,GO:0051704,GO:0051716,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0090726,GO:0098772,GO:0099568,GO:0099738,GO:0120025,GO:1902531,GO:1902532,GO:1905708,GO:2000241,GO:2000243
EggNOG free text desc.Gtpase activating protein
EggNOG OGs38EV1@33154,3NU3K@4751,COG5261@1,KOG2128@2759
COG Functional cat.T
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size234
Cds size234
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10311.649.1prot_H-fluviatilis_contig10311.649.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10311 1..462 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.1720476-CDS-H-fluviatilis_contig10311:0..841622929076.1720476-CDS-H-fluviatilis_contig10311:0..84Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10311 1..84 -
1691135173.4021175-CDS-H-fluviatilis_contig10311:0..841691135173.4021175-CDS-H-fluviatilis_contig10311:0..84Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10311 1..84 -
1622929076.195995-CDS-H-fluviatilis_contig10311:227..3241622929076.195995-CDS-H-fluviatilis_contig10311:227..324Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10311 228..324 -
1691135173.4148767-CDS-H-fluviatilis_contig10311:227..3241691135173.4148767-CDS-H-fluviatilis_contig10311:227..324Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10311 228..324 -
1622929076.2213297-CDS-H-fluviatilis_contig10311:409..4621622929076.2213297-CDS-H-fluviatilis_contig10311:409..462Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10311 410..462 -
1691135173.4232585-CDS-H-fluviatilis_contig10311:409..4621691135173.4232585-CDS-H-fluviatilis_contig10311:409..462Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10311 410..462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10311.649.1

>prot_H-fluviatilis_contig10311.649.1 ID=prot_H-fluviatilis_contig10311.649.1|Name=mRNA_H-fluviatilis_contig10311.649.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=78bp
PLKGKRQLYEDLFYLLQSRPRYFAKLARLVQAKDVPNFVQTVVFDMYGDQ
YDTREERLLLALFRRVLKIEIDATTDKG
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mRNA from alignment at H-fluviatilis_contig10311:1..462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10311.649.1 ID=mRNA_H-fluviatilis_contig10311.649.1|Name=mRNA_H-fluviatilis_contig10311.649.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=462bp|location=Sequence derived from alignment at H-fluviatilis_contig10311:1..462- (Heribaudiella fluviatilis SAG_13_90)
CCGCTGAAGGGCAAGCGGCAGCTTTACGAGGACTTGTTCTACCTGCTGCA GAGGTAAGGGCGAGGCAGCTGGTTGTGAGGGGGGTTTCTAGGTGATGATG TGATTCGTACATATGATCATTTTTGTGAATTACCGCAGCCGTCCGCGGTA TTTCGCCAAGTTGGCGCGGTTGGTGCAAGCCAAGGATGTGCCCAATTTCG TGCAAACCGTGGTGTTCGACATGTACGGCGATCAGGTACTGAACTACCCG CTAGTACCGGACACATTCTACCAGTCAGCATCACTAGACAAAGGCGTGTG CTTTGTTGCTTTATTGTTGATTGGTGCTGTGATGATGTGCTGGGCTGATG TGGTGCTATGATGATGATGGTGCTGTAGTATGACACGCGCGAGGAGCGGC TGTTGCTGGCGCTGTTTCGGCGCGTGCTCAAAATCGAAATCGATGCCACC ACCGATAAGGGC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10311:1..462-

>mRNA_H-fluviatilis_contig10311.649.1 ID=mRNA_H-fluviatilis_contig10311.649.1|Name=mRNA_H-fluviatilis_contig10311.649.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=468bp|location=Sequence derived from alignment at H-fluviatilis_contig10311:1..462- (Heribaudiella fluviatilis SAG_13_90)
CCGCTGAAGGGCAAGCGGCAGCTTTACGAGGACTTGTTCTACCTGCTGCA
GAGCCGCTGAAGGGCAAGCGGCAGCTTTACGAGGACTTGTTCTACCTGCT
GCAGAGCCGTCCGCGGTATTTCGCCAAGTTGGCGCGGTTGGTGCAAGCCA
AGGATGTGCCCAATTTCGTGCAAACCGTGGTGTTCGACATGTACGGCGAT
CAGCCGTCCGCGGTATTTCGCCAAGTTGGCGCGGTTGGTGCAAGCCAAGG
ATGTGCCCAATTTCGTGCAAACCGTGGTGTTCGACATGTACGGCGATCAG
TATGACACGCGCGAGGAGCGGCTGTTGCTGGCGCTGTTTCGGCGCGTGCT
CAAAATCGAAATCGATGCCACCACCGATAAGGGCTATGACACGCGCGAGG
AGCGGCTGTTGCTGGCGCTGTTTCGGCGCGTGCTCAAAATCGAAATCGAT
GCCACCACCGATAAGGGC
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