mRNA_H-fluviatilis_contig103100.647.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103100.647.1
Unique NamemRNA_H-fluviatilis_contig103100.647.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig103100.647.1 vs. uniprot
Match: A0A8K1FFW6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFW6_PYTOL)

HSP 1 Score: 106 bits (265), Expect = 1.800e-24
Identity = 53/110 (48.18%), Postives = 71/110 (64.55%), Query Frame = 1
Query:   10 RHSNGVVDHAEFVAGLSLLCRASSDDKIKAAFSLFDIDGDGFITYDEMLRYMTSFFEVNGMYCVSPHFSIALFNFGTLVGVATAKHCFERADLNGDGRISYDEFTAWCNS 339
            R  NG +D +E  +GLS+LC+ + D K+KAAF L+D +GDGFI+ DEM+RY+TS F+V  +Y V P            +G  TA+  F  ADLN DG++SYDEF  W NS
Sbjct: 1335 RDHNGRIDFSELASGLSVLCKGARDAKVKAAFRLYDFNGDGFISLDEMIRYLTSIFKV--LYEVQPQMKNETGVSAEELGAITAEQAFMEADLNHDGKLSYDEFLTWYNS 1442          
BLAST of mRNA_H-fluviatilis_contig103100.647.1 vs. uniprot
Match: A0A1V9ZAL1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZAL1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.440e-24
Identity = 53/104 (50.96%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   19 NGVVDHAEFVAGLSLLCRASSDDKIKAAFSLFDIDGDGFITYDEMLRYMTSFFEVNGMYCVSPHFSIALFNFGTLVGVATAKHCFERADLNGDGRISYDEFTAW 330
            N  VD +E  +GLS+LC+ S D K+KAAFSL+D +GDG+I+ DEM+RY+TS F V  +Y VSPH ++        +G ATAK  F  AD N DG++S  EFT W
Sbjct: 1145 NNAVDFSELASGLSVLCKGSRDLKVKAAFSLYDYNGDGYISMDEMIRYLTSVFRV--LYEVSPHMALETGVSAVELGAATAKQAFAEADTNHDGKLSLAEFTEW 1246          
BLAST of mRNA_H-fluviatilis_contig103100.647.1 vs. uniprot
Match: A0A662WUA9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUA9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 7.430e-23
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   10 RHSNGVVDHAEFVAGLSLLCRASSDDKIKAAFSLFDIDGDGFITYDEMLRYMTSFFEVNGMYCVSPHFSIALFNFGTLVGVATAKHCFERADLNGDGRISYDEFTAWCNS 339
            R  NG +D +E  +GLS+LC+ + D K+KAAF L+D + DGFI+ DEM RY+TS F+V  +Y V P            +GV TA+  F  AD N DG++SYDEF  W NS
Sbjct: 1311 RDGNGRIDFSELASGLSVLCKGARDAKVKAAFRLYDFNADGFISLDEMKRYLTSIFKV--LYEVQPEMRQETGVTAEELGVVTAEQAFLEADSNRDGKLSYDEFLTWYNS 1418          
BLAST of mRNA_H-fluviatilis_contig103100.647.1 vs. uniprot
Match: A0A3R7H6Z0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H6Z0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 7.440e-23
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   10 RHSNGVVDHAEFVAGLSLLCRASSDDKIKAAFSLFDIDGDGFITYDEMLRYMTSFFEVNGMYCVSPHFSIALFNFGTLVGVATAKHCFERADLNGDGRISYDEFTAWCNS 339
            R  NG +D +E  +GLS+LC+ + D K+KAAF L+D + DGFI+ DEM RY+TS F+V  +Y V P            +G+ TA+  F  AD N DG++SYDEF  W NS
Sbjct:  885 RDGNGQIDFSELASGLSVLCKGARDAKVKAAFRLYDFNADGFISLDEMKRYLTSIFKV--LYEVQPEMRKETGVSAEELGIVTAEQAFLEADSNHDGKLSYDEFLTWYNS 992          
BLAST of mRNA_H-fluviatilis_contig103100.647.1 vs. uniprot
Match: G4YZI8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YZI8_PHYSP)

HSP 1 Score: 101 bits (252), Expect = 1.020e-22
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   16 SNGVVDHAEFVAGLSLLCRASSDDKIKAAFSLFDIDGDGFITYDEMLRYMTSFFEVNGMYCVSPHFSIALFNFGTLVGVATAKHCFERADLNGDGRISYDEFTAWCNSG 342
            ++  VD  E  +GLS+L  +S DDK++AAF L+DI+GDG+IT +EM+ YMTS F+V  MY  +      +      +  ATA+ CF+ ADLNGD ++S++EF  WC SG
Sbjct: 2319 NSNTVDFGELASGLSVLSGSSMDDKVRAAFQLYDINGDGYITQEEMISYMTSIFKV--MYETTDSTKTKMGVSPEELARATAEQCFKEADLNGDNKLSFEEFKKWCTSG 2425          
BLAST of mRNA_H-fluviatilis_contig103100.647.1 vs. uniprot
Match: A0A6G0SMC9_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6G0SMC9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.020e-22
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   10 RHSNGVVDHAEFVAGLSLLCRASSDDKIKAAFSLFDIDGDGFITYDEMLRYMTSFFEVNGMYCVSPHFSIALFNFGTLVGVATAKHCFERADLNGDGRISYDEFTAWCNS 339
            R  NG +D +E  +GLS+LC+ + D K+KAAF L+D + DGFI+ DEM RY+TS F+V  +Y V P            +GV TA+  F  AD N DG++SYDEF  W NS
Sbjct: 1286 RDGNGQIDFSELASGLSVLCKGARDAKVKAAFRLYDFNADGFISLDEMKRYLTSIFKV--LYEVQPEMRQETGVSPEELGVVTAEQAFLEADSNHDGKLSYDEFLTWYNS 1393          
BLAST of mRNA_H-fluviatilis_contig103100.647.1 vs. uniprot
Match: A0A812YZT0_9DINO (Calmodulin n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YZT0_9DINO)

HSP 1 Score: 100 bits (248), Expect = 1.330e-22
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   19 NGVVDHAEFVAGLSLLCRASSDDKIKAAFSLFDIDGDGFITYDEMLRYMTSFFEVNGMYCVSPHFSIALFNFGTLVGVATAKHCFERADLNGDGRISYDEFTAWCNSG 342
            +GV+D  E  +GLS+LC    D+K++AAF LFD +GDG+IT DEM  Y+ S F +  +Y   P    ++    T +  ATA+ CFE ADLN D R+S++EF  W N+G
Sbjct:  134 DGVIDVTELCSGLSVLCAGDRDNKVRAAFDLFDKNGDGYITLDEMKTYLNSVFRI--LYNFQPDLEDSVGASVTELATATAEQCFEEADLNQDSRLSFEEFRRWYNAG 239          
BLAST of mRNA_H-fluviatilis_contig103100.647.1 vs. uniprot
Match: T0RAF3_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RAF3_SAPDV)

HSP 1 Score: 100 bits (250), Expect = 1.890e-22
Identity = 53/110 (48.18%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    1 AHGRHSNGVVDHAEFVAGLSLLCRASSDDKIKAAFSLFDIDGDGFITYDEMLRYMTSFFEVNGMYCVSPHFSIALFNFGTLVGVATAKHCFERADLNGDGRISYDEFTAW 330
            A  +  N  VD +E  +GLS+LC+ S D K+KAAFSL+D +GDG+I+ DEM+RY+TS F V  +Y VSP  +         +G ATAK  F  AD N DG++S +EFT W
Sbjct: 1156 AFDQDQNERVDFSELASGLSVLCKGSRDLKVKAAFSLYDYNGDGYISMDEMVRYLTSVFRV--LYEVSPGMATETGVSAAELGAATAKQAFVEADTNHDGKLSLEEFTEW 1263          
BLAST of mRNA_H-fluviatilis_contig103100.647.1 vs. uniprot
Match: A0A3M6VB29_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VB29_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.900e-22
Identity = 51/104 (49.04%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   19 NGVVDHAEFVAGLSLLCRASSDDKIKAAFSLFDIDGDGFITYDEMLRYMTSFFEVNGMYCVSPHFSIALFNFGTLVGVATAKHCFERADLNGDGRISYDEFTAW 330
            NG VD  E  +GLS+LC  S ++K++AAFSLFD++ DGFI+ DEM+RY++S F+V  +Y  SP  +  L      + V TA+ CF   DLN DG++S+DEF AW
Sbjct: 2080 NGTVDFCELSSGLSILCGGSREEKVRAAFSLFDLNKDGFISLDEMVRYLSSVFKV--LYETSPGTNEKLGVRPEELAVITAEQCFLEGDLNEDGKVSFDEFVAW 2181          
BLAST of mRNA_H-fluviatilis_contig103100.647.1 vs. uniprot
Match: A0A2P4X673_9STRA (Calcium-binding protein NCS-1 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X673_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.120e-22
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   10 RHSNGVVDHAEFVAGLSLLCRASSDDKIKAAFSLFDIDGDGFITYDEMLRYMTSFFEVNGMYCVSPHFSIALFNFGTLVGVATAKHCFERADLNGDGRISYDEFTAWCNS 339
            R  NG +D +E  +GLS+LC+ + D K+KAAF L+D + DGFI+ +EM RY+TS F+V  +Y V P            +G+ TA+  F  AD N DG++SYDEF  W N+
Sbjct:  208 RDGNGQIDFSELASGLSVLCKGARDAKVKAAFRLYDFNADGFISLEEMKRYLTSIFKV--LYEVQPEMRQETGVSADELGIVTAEQAFLEADSNHDGKLSYDEFLTWYNA 315          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103100.647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1FFW6_PYTOL1.800e-2448.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9ZAL1_9STRA2.440e-2450.96Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A662WUA9_9STRA7.430e-2347.27Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A3R7H6Z0_9STRA7.440e-2346.36Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
G4YZI8_PHYSP1.020e-2245.87Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A6G0SMC9_9STRA1.020e-2247.27Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A812YZT0_9DINO1.330e-2245.37Calmodulin n=1 Tax=Symbiodinium sp. KB8 TaxID=2309... [more]
T0RAF3_SAPDV1.890e-2248.18Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A3M6VB29_9STRA1.900e-2249.04Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A2P4X673_9STRA2.120e-2244.55Calcium-binding protein NCS-1 (Fragment) n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103100contigH-fluviatilis_contig103100:95..657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue3.1e-19
Seed eggNOG ortholog42099.EPrPV00000021615
EggNOG free text desc.Source PGD
EggNOG OGs1MFBP@121069,COG5126@1,KOG0044@2759
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size342
Cds size342
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103100.647.1prot_H-fluviatilis_contig103100.647.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103100 95..657 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.0188303-CDS-H-fluviatilis_contig103100:94..1931622929076.0188303-CDS-H-fluviatilis_contig103100:94..193Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103100 95..193 -
1691135173.3285959-CDS-H-fluviatilis_contig103100:94..1931691135173.3285959-CDS-H-fluviatilis_contig103100:94..193Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103100 95..193 -
1622929076.03824-CDS-H-fluviatilis_contig103100:330..4761622929076.03824-CDS-H-fluviatilis_contig103100:330..476Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103100 331..476 -
1691135173.3488653-CDS-H-fluviatilis_contig103100:330..4761691135173.3488653-CDS-H-fluviatilis_contig103100:330..476Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103100 331..476 -
1622929076.0686963-CDS-H-fluviatilis_contig103100:560..6571622929076.0686963-CDS-H-fluviatilis_contig103100:560..657Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103100 561..657 -
1691135173.3683517-CDS-H-fluviatilis_contig103100:560..6571691135173.3683517-CDS-H-fluviatilis_contig103100:560..657Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103100 561..657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103100.647.1

>prot_H-fluviatilis_contig103100.647.1 ID=prot_H-fluviatilis_contig103100.647.1|Name=mRNA_H-fluviatilis_contig103100.647.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=114bp
AHGRHSNGVVDHAEFVAGLSLLCRASSDDKIKAAFSLFDIDGDGFITYDE
MLRYMTSFFEVNGMYCVSPHFSIALFNFGTLVGVATAKHCFERADLNGDG
RISYDEFTAWCNSG
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mRNA from alignment at H-fluviatilis_contig103100:95..657-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103100.647.1 ID=mRNA_H-fluviatilis_contig103100.647.1|Name=mRNA_H-fluviatilis_contig103100.647.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=563bp|location=Sequence derived from alignment at H-fluviatilis_contig103100:95..657- (Heribaudiella fluviatilis SAG_13_90)
GCACACGGACGCCACAGCAACGGCGTAGTGGACCACGCGGAATTCGTGGC CGGTCTGTCACTGCTCTGCCGCGCGTCCAGCGATGACAAGATCAAAGGTA GAGTGCAAGTGTTGTTCTTGTGGTTTTCCGATCCTGTGACAACACTTGTG GTTTTTCCGATCCTATGATGGGCTGTTGTAGCGGCATTTTCGTTGTTTGA CATTGACGGCGATGGCTTTATTACATACGATGAGATGCTGCGCTACATGA CGTCGTTCTTTGAGGTAAACGGAATGTATTGTGTGAGTCCGCACTTTTCA ATTGCACTCTTCAACTTTGGAACACTTGTGTGACGGTGTGCCAGGTGTGT TTTGCCTTGGACACCACCATGAAGAAGCGGTTTGGAAACATCACCGCGGA GCAGGTAGGTTTGTTTCGTTTGGCAGTTTGTTTTTGTTGTTGGCAGTAAT CGTGGTGATGACAGGTGGGCGTCGCCACGGCCAAACATTGCTTTGAACGG GCGGACCTGAACGGCGATGGGCGTATCTCGTATGACGAATTCACGGCGTG GTGCAACTCAGGT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig103100:95..657-

>mRNA_H-fluviatilis_contig103100.647.1 ID=mRNA_H-fluviatilis_contig103100.647.1|Name=mRNA_H-fluviatilis_contig103100.647.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=684bp|location=Sequence derived from alignment at H-fluviatilis_contig103100:95..657- (Heribaudiella fluviatilis SAG_13_90)
GCACACGGACGCCACAGCAACGGCGTAGTGGACCACGCGGAATTCGTGGC
CGGTCTGTCACTGCTCTGCCGCGCGTCCAGCGATGACAAGATCAAAGGCA
CACGGACGCCACAGCAACGGCGTAGTGGACCACGCGGAATTCGTGGCCGG
TCTGTCACTGCTCTGCCGCGCGTCCAGCGATGACAAGATCAAAGCGGCAT
TTTCGTTGTTTGACATTGACGGCGATGGCTTTATTACATACGATGAGATG
CTGCGCTACATGACGTCGTTCTTTGAGGTAAACGGAATGTATTGTGTGAG
TCCGCACTTTTCAATTGCACTCTTCAACTTTGGAACACTTCGGCATTTTC
GTTGTTTGACATTGACGGCGATGGCTTTATTACATACGATGAGATGCTGC
GCTACATGACGTCGTTCTTTGAGGTAAACGGAATGTATTGTGTGAGTCCG
CACTTTTCAATTGCACTCTTCAACTTTGGAACACTTGTGGGCGTCGCCAC
GGCCAAACATTGCTTTGAACGGGCGGACCTGAACGGCGATGGGCGTATCT
CGTATGACGAATTCACGGCGTGGTGCAACTCAGGTGTGGGCGTCGCCACG
GCCAAACATTGCTTTGAACGGGCGGACCTGAACGGCGATGGGCGTATCTC
GTATGACGAATTCACGGCGTGGTGCAACTCAGGT
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