mRNA_H-fluviatilis_contig10310.646.1 (mRNA) Heribaudiella fluviatilis SAG_13_90
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Overview
Homology
BLAST of mRNA_H-fluviatilis_contig10310.646.1 vs. uniprot
Match: D7FZF8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF8_ECTSI) HSP 1 Score: 351 bits (901), Expect = 1.500e-114 Identity = 169/246 (68.70%), Postives = 199/246 (80.89%), Query Frame = 1
Query: 1 RRYIESG-CATLSEIFEARYAKYGLTGPLYPYDEATNTLVHNATGSWYLASSVYVTGGSSLVVRGTEVGGDCDRLLLASNTTKFINVRAHGGNLYFEDTHVESWDLNINDGRGGNDEDFEDGRSYISAISEVVTDPASICEGTAQNDMGEARLDIINSEVNHLGWYDSESYGIAYKVRGFCKDLSNPEIFDDVSVTGDMTGSHIHHLYFGHYSFGHQGGNFSNNEVHDNYGYGFDPHDDSDYLTIH 735
R Y+E+G C TL++I+E+R G GPLYP+DE T + TGSWYL S++Y+T GS LVV+G GGDCD LLLAS+ KFIN+RAHGG L + THVESWDL G DE+ EDGRSY+SAISEV+TDPA C+GTA+NDMGEAR+DII+SEVNHLGWYDSESYGIAYKVRGFCKDLSNPE+FD VSVTGD+ GS IH YFGHYS+GHQGGN+S+N++H N GYGFDPHDDSDY+TIH
Sbjct: 73 RLYLENGACVTLTDIYESRLDDTGNKGPLYPFDETTLDISDTVTGSWYLESTLYITEGSRLVVQGLSKGGDCDHLLLASSPEKFINLRAHGGELMLDGTHVESWDL----AAGTVDENNEDGRSYLSAISEVITDPAETCDGTAKNDMGEARMDIIDSEVNHLGWYDSESYGIAYKVRGFCKDLSNPELFDSVSVTGDILGSDIHDNYFGHYSYGHQGGNWSHNKMHHNIGYGFDPHDDSDYITIH 314
BLAST of mRNA_H-fluviatilis_contig10310.646.1 vs. uniprot
Match: D7FZF9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZF9_ECTSI) HSP 1 Score: 339 bits (870), Expect = 5.650e-110 Identity = 164/247 (66.40%), Postives = 198/247 (80.16%), Query Frame = 1
Query: 1 RRYIESG-CATLSEIFEARYAKYG--LTGPLYPYDEATNTLVHNATGSWYLASSVYVTGGSSLVVRGTEVGGDCDRLLLASNTTKFINVRAHGGNLYFEDTHVESWDLNINDGRGGNDEDFEDGRSYISAISEVVTDPASICEGTAQNDMGEARLDIINSEVNHLGWYDSESYGIAYKVRGFCKDLSNPEIFDDVSVTGDMTGSHIHHLYFGHYSFGHQGGNFSNNEVHDNYGYGFDPHDDSDYLTI 732
R Y+E+G CAT+++I+E+R Y GP+YP+DE T + +N TGSWYL SS+YVT G+ LVV+G GGDCD LLLAS+ KFINVRA+GG + + THVESWDL G DE+++DGRSY+SAISEV+ +PA CEG A NDMGEAR+DII+SE+NHLG Y+SESYGIAYKVRGFC DLSNPE+F+ V VTGD+ GSHIHHLYFGHYS+GHQGGN+S N VHDN GYGFDPHDDSDY+TI
Sbjct: 63 RLYLENGACATMTDIYESRIDTYTGENKGPVYPFDETTGGITNNVTGSWYLGSSLYVTEGARLVVQGLSKGGDCDHLLLASSAEKFINVRAYGGEIMLDGTHVESWDLL----EGTVDENYDDGRSYLSAISEVIINPAMECEGMATNDMGEARMDIIDSEINHLGHYESESYGIAYKVRGFCNDLSNPELFETVGVTGDILGSHIHHLYFGHYSYGHQGGNWSYNTVHDNVGYGFDPHDDSDYVTI 305
BLAST of mRNA_H-fluviatilis_contig10310.646.1 vs. uniprot
Match: A0A6H5KBD3_9PHAE (MEP17 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD3_9PHAE) HSP 1 Score: 332 bits (850), Expect = 3.730e-107 Identity = 166/265 (62.64%), Postives = 195/265 (73.58%), Query Frame = 1
Query: 4 RYIESG-CATLSEIFEARYAKYGLTGPLYPYDEATNTLVHNATGSWYLASSVYVTGGSSLVVRGTEVGGDCDRLLLASNTTKFINVRAHGGNLYFEDTHVESWDLNINDGRGGNDEDFEDGRSYISAISEVVTDPASICEGTAQNDMGEARLDIINSEVNH--------------------LGWYDSESYGIAYKVRGFCKDLSNPEIFDDVSVTGDMTGSHIHHLYFGHYSFGHQGGNFSNNEVHDNYGYGFDPHDDSDYLTIH 735
+Y+E+G C TL++I+E+R G GPLYP+DE + TGSWYL SS+Y+T GS LVV+G GGDCD LLLAS+ KFINVRAHGG L + THVESWDL G DE+ EDGRSY+SAISEV+TDP C+GTA+NDMGEAR+DII+SEVN LGWYDSESYGI+YKVRGFC DLSNPE+FD VSVTGD+ GS IH YFGHYS+GHQGGN+S+N++H N GYGFDPHDDSDYLTIH
Sbjct: 34 KYLENGACVTLTDIYESRSDDSGNKGPLYPFDETALDISDTVTGSWYLESSLYITEGSRLVVQGLSKGGDCDHLLLASSPEKFINVRAHGGELMLDGTHVESWDL----AAGTVDENNEDGRSYLSAISEVITDPTETCDGTAKNDMGEARMDIIDSEVNRTTQTSHSAPLTSRLPQYKTDLGWYDSESYGISYKVRGFCTDLSNPELFDSVSVTGDILGSDIHDNYFGHYSYGHQGGNWSHNKMHHNIGYGFDPHDDSDYLTIH 294
BLAST of mRNA_H-fluviatilis_contig10310.646.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI) HSP 1 Score: 270 bits (691), Expect = 6.120e-85 Identity = 138/254 (54.33%), Postives = 176/254 (69.29%), Query Frame = 1
Query: 1 RRYIES--------GCATLSEIFEARYAKYGLTGPLYPYDEATNTLVHNATGSWYLASSVYVTGGSSLVVRGTEVGGDCDRLLLASNTTKFINVRAHGGNLYFEDTHVESWDLNINDGRGGNDEDFEDGRSYISAISEVVTDPASICEGTAQNDMGEARLDIINSEVNHLGWYDSESYGIAYKVRGFCKDLSNPEIFDDVSVTGDMTGSHIHHLYFGHYSFGHQGGNFSNNEVHDNYGYGFDPHDDSDYLTIHD 738
R Y+ES GC TL +I+E+R K GPLY D + + +ATG+W L +YV G +L V G+E GGD D L L S FIN+RAHGG+L F T V SWD + N DED DGRSYISAISE++TD CEG A+N MGEAR+DI +SE+ +LG++DSESYG+ +KVRGFC+D SNPE+FDDV+V G++ S IHH+ FG Y++GHQ G++ N++HDN GYGFDPHDDSD+LTIHD
Sbjct: 54 RLYLESADNGTTRGGCVTLGQIWESRAGK----GPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTN----SPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHD 299
BLAST of mRNA_H-fluviatilis_contig10310.646.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 271 bits (693), Expect = 6.510e-84 Identity = 141/253 (55.73%), Postives = 174/253 (68.77%), Query Frame = 1
Query: 1 RRYIES-------GCATLSEIFEARYAKYGLTGPLYPYDEATNTLVHNATGSWYLASSVYVTGGSSLVVRGTEVGGDCDRLLLASNTTKFINVRAHGGNLYFEDTHVESWDLNINDGRGGNDEDFEDGRSYISAISEVVTDPASICEGTAQNDMGEARLDIINSEVNHLGWYDSESYGIAYKVRGFCKDLSNPEIFDDVSVTGDMTGSHIHHLYFGHYSFGHQGGNFSNNEVHDNYGYGFDPHDDSDYLTIHD 738
R Y+ES GCATL +I+E+R K PLY D + + TG+W L +YV G +L V GT+ GGD D L L S + +IN+RAHGG+L F T V SWD + N DED DGRSYISA+SE+VTD CEG A+N MGEAR+DI NSE+ +LG+ DSESYG+ +KVRGFCKD SNPEIFDDV+V G+M S IHHL FG Y++GHQ G++ N++HDN GYGFDPHDDSD+LTIHD
Sbjct: 59 RLYLESADGETRGGCATLGQIWESRAGK----APLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKVFSWDTSTN----SPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHD 303
BLAST of mRNA_H-fluviatilis_contig10310.646.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 270 bits (691), Expect = 1.160e-83 Identity = 138/254 (54.33%), Postives = 176/254 (69.29%), Query Frame = 1
Query: 1 RRYIES--------GCATLSEIFEARYAKYGLTGPLYPYDEATNTLVHNATGSWYLASSVYVTGGSSLVVRGTEVGGDCDRLLLASNTTKFINVRAHGGNLYFEDTHVESWDLNINDGRGGNDEDFEDGRSYISAISEVVTDPASICEGTAQNDMGEARLDIINSEVNHLGWYDSESYGIAYKVRGFCKDLSNPEIFDDVSVTGDMTGSHIHHLYFGHYSFGHQGGNFSNNEVHDNYGYGFDPHDDSDYLTIHD 738
R Y+ES GC TL +I+E+R K GPLY D + + +ATG+W L +YV G +L V G+E GGD D L L S FIN+RAHGG+L F T V SWD + N DED DGRSYISAISE++TD CEG A+N MGEAR+DI +SE+ +LG++DSESYG+ +KVRGFC+D SNPE+FDDV+V G++ S IHH+ FG Y++GHQ G++ N++HDN GYGFDPHDDSD+LTIHD
Sbjct: 54 RLYLESADNGTTRGGCVTLGQIWESRAGK----GPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTN----SPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHD 299
BLAST of mRNA_H-fluviatilis_contig10310.646.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 265 bits (677), Expect = 1.240e-83 Identity = 139/253 (54.94%), Postives = 170/253 (67.19%), Query Frame = 1
Query: 1 RRYIES-------GCATLSEIFEARYAKYGLTGPLYPYDEATNTLVHNATGSWYLASSVYVTGGSSLVVRGTEVGGDCDRLLLASNTTKFINVRAHGGNLYFEDTHVESWDLNINDGRGGNDEDFEDGRSYISAISEVVTDPASICEGTAQNDMGEARLDIINSEVNHLGWYDSESYGIAYKVRGFCKDLSNPEIFDDVSVTGDMTGSHIHHLYFGHYSFGHQGGNFSNNEVHDNYGYGFDPHDDSDYLTIHD 738
R Y+ES GC TL +I+E R K PLY D + N TG+W L +YV G +L V GT GGD D L L S T +IN+RAHGG+L F T V SWD + N DED DGRSYISAISE++TD CEG A+N MGEAR+DI NSE+ +LG+ DSESYG+ +KVRGFCKD SNP IFD+V+V G+M S IHH+ FG Y++GHQ G++ N++HDN GYGFDPHDDSD+LTIHD
Sbjct: 58 RLYLESADGETRGGCVTLGQIWENRAGK----APLYAVDPESGNESENETGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDTSTN----SPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHD 302
BLAST of mRNA_H-fluviatilis_contig10310.646.1 vs. uniprot
Match: D7FMJ0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ0_ECTSI) HSP 1 Score: 270 bits (690), Expect = 2.430e-81 Identity = 139/249 (55.82%), Postives = 175/249 (70.28%), Query Frame = 1
Query: 1 RRYIES-----GCATLSEIFEARYAKYGLTGPLYPYDEATNTLVHNATGSWYLASSVYVTGGSSLVVRGTEVGGDCDRLLLASNTTKFINVRAHGGNLYFEDTHVESWDLNINDGRGGNDEDFEDGRSYISAISEVVTDPASICEGTAQNDMGEARLDIINSEVNHLGWYDSESYGIAYKVRGFCKDLSNPEIFDDVSVTGDMTGSHIHHLYFGHYSFGHQGGNFSNNEVHDNYGYGFDPHDDSDYLTI 732
R Y+E GC TL+EI+E+ + PLYP + ATN V TG W L +YVT G L V GT+ GGDCD L L S+ T FIN+RAHGG+ F T V SW N+G+G D + EDGRSYISA+SEV+ DP C GTA+++MGEAR+D+I+SE+ LG+Y+SESYG+ +KVRGFC D SN ++FD V+V GDM S+IH YFGHYS+GHQGGN+S N++H+N YGFDPHDDSDYL I
Sbjct: 367 RIYVEQATNRGGCFTLTEIWESG------SRPLYPLEPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFINLRAHGGSFSFLGTKVVSW----NEGKGTVDTNHEDGRSYISAVSEVIYDPNQTCNGTAKSEMGEARMDVIDSEIAFLGYYESESYGLTWKVRGFCIDKSNLDVFDFVNVYGDMINSNIHDNYFGHYSYGHQGGNWSYNKMHENVEYGFDPHDDSDYLHI 605
BLAST of mRNA_H-fluviatilis_contig10310.646.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE) HSP 1 Score: 254 bits (648), Expect = 2.420e-77 Identity = 129/253 (50.99%), Postives = 173/253 (68.38%), Query Frame = 1
Query: 1 RRYIES-------GCATLSEIFEARYAKYGLTGPLYPYDEATNTLVHNATGSWYLASSVYVTGGSSLVVRGTEVGGDCDRLLLASNTTKFINVRAHGGNLYFEDTHVESWDLNINDGRGGNDEDFEDGRSYISAISEVVTDPASICEGTAQNDMGEARLDIINSEVNHLGWYDSESYGIAYKVRGFCKDLSNPEIFDDVSVTGDMTGSHIHHLYFGHYSFGHQGGNFSNNEVHDNYGYGFDPHDDSDYLTIHD 738
R Y+ES GC TL +I+E + + PLY D + + +ATG+W L ++V G +L V GT GGD D L L S + FIN+RAHGG+L F T V +WD +IN G D D EDGRSY+SA+SEV+TD + C G A+N+MGEAR+DI +SE+ +LG++ SESYG+ +KVRGFC D SN ++F+DV+V G++ S IHH FG Y++GHQ G++ N++HDN GYGFDPHDDSD+LTIHD
Sbjct: 52 RLYLESADSKTRGGCVTLEQIWEHQRGE----APLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSIN----GPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHD 296
BLAST of mRNA_H-fluviatilis_contig10310.646.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 254 bits (649), Expect = 3.230e-74 Identity = 128/250 (51.20%), Postives = 175/250 (70.00%), Query Frame = 1
Query: 1 RRYIES-GCATLSEIFEARYAKY--GLTGPLYPYDEATNTL--VHNATGSWYLASSVYVTGGSSLVVRGTEVGGDCDRLLLASN-TTKFINVRAHGGNLYFEDTHVESWDLNINDGRGGNDEDFEDGRSYISAISEVVTDPASICEGTAQNDMGEARLDIINSEVNHLGWYDSESYGIAYKVRGFCKDLSNPEIFDDVSVTGDMTGSHIHHLYFGHYSFGHQGGNFSNNEVHDNYGYGFDPHDDSDYLTI 732
R Y E GC T+++++ R + GP+Y D+ L T +W LA+ +Y+TGG +GT GGDC++L + S + F VR HGG+LYFEDT V SWD + + E +E+GRS+++ +SE +T CEG A+N+MGE R+DIINSE+ +LG++DSESYG+ +KVRGFCKDLSNPE+F+ +V GD+TGS IHHLY+GHYS+GHQGG ++NN++HDN+ YGFDPHDDSDYLTI
Sbjct: 441 RLYAEGEGCFTMTDLYNFRGTENDGSSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQ----ETYENGRSFLNCVSEKLT--GDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTI 684 The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10310.646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig10310.646.1 >prot_H-fluviatilis_contig10310.646.1 ID=prot_H-fluviatilis_contig10310.646.1|Name=mRNA_H-fluviatilis_contig10310.646.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=324bp RRYIESGCATLSEIFEARYAKYGLTGPLYPYDEATNTLVHNATGSWYLASback to top mRNA from alignment at H-fluviatilis_contig10310:205..2246- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-fluviatilis_contig10310.646.1 ID=mRNA_H-fluviatilis_contig10310.646.1|Name=mRNA_H-fluviatilis_contig10310.646.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=2042bp|location=Sequence derived from alignment at H-fluviatilis_contig10310:205..2246- (Heribaudiella fluviatilis SAG_13_90)back to top Coding sequence (CDS) from alignment at H-fluviatilis_contig10310:205..2246- >mRNA_H-fluviatilis_contig10310.646.1 ID=mRNA_H-fluviatilis_contig10310.646.1|Name=mRNA_H-fluviatilis_contig10310.646.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1944bp|location=Sequence derived from alignment at H-fluviatilis_contig10310:205..2246- (Heribaudiella fluviatilis SAG_13_90)back to top |