mRNA_H-fluviatilis_contig10306.638.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10306.638.1
Unique NamemRNA_H-fluviatilis_contig10306.638.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10306.638.1 vs. uniprot
Match: D8LM94_ECTSI (Elicitor-inducible LRR receptor-like protein EILP (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM94_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 3.690e-10
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:  193 PGCGEEVAAFHQCAGDGYEGSGCCRMGYDCTALSDCYSE 309
            P C + V AF+QC G GYEGS CCR GYDC  ++DCYSE
Sbjct:   24 PDCEDPVGAFNQCGGAGYEGSACCRTGYDCVEMADCYSE 62
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BLAST of mRNA_H-fluviatilis_contig10306.638.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 3.330e-7
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:  193 PGCGEEVAAFHQCAGDGYEGSGCCRMGYDCTALSDCYSE 309
            P C + V  F+QC G GYEGS CCR GYDC  ++DCY E
Sbjct:  646 PDCEDPVGGFNQCGGPGYEGSTCCRTGYDCEQMADCYFE 684
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BLAST of mRNA_H-fluviatilis_contig10306.638.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 4.280e-7
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:  193 PGCGEEVAAFHQCAGDGYEGSGCCRMGYDCTALSDCYSE 309
            P C + V AF QC G GY+GS CCR GY+C  ++DCYSE
Sbjct:  428 PDCEDPVGAFAQCGGAGYDGSTCCRAGYECEKMADCYSE 466
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BLAST of mRNA_H-fluviatilis_contig10306.638.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 5.880e-7
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  199 CGEEVAAFHQCAGDGYEGSGCCRMGYDCTALSDCYSEVVAK 321
            C + V AF+QC G+GY+GS CCR GY+C  +++CYSE   K
Sbjct:  455 CEDPVGAFNQCGGEGYDGSTCCRAGYECEEMAECYSECRPK 495
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BLAST of mRNA_H-fluviatilis_contig10306.638.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 7.530e-5
Identity = 19/37 (51.35%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:  199 CGEEVAAFHQCAGDGYEGSGCCRMGYDCTALSDCYSE 309
            C + V  + QC G+ YEGS CCR GY+CT ++ CYS+
Sbjct:  295 CLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQ 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10306.638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LM94_ECTSI3.690e-1064.10Elicitor-inducible LRR receptor-like protein EILP ... [more]
D8LM92_ECTSI3.330e-758.97EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LD67_ECTSI4.280e-758.97EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LMF4_ECTSI5.880e-753.66EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
D7G4D7_ECTSI7.530e-551.35EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10306contigH-fluviatilis_contig10306:65..500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved protein
Ec32 orthologEc-00_010740.1
Exons1
Model size436
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10306.638.1prot_H-fluviatilis_contig10306.638.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10306 116..427 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.0566108-UTR-H-fluviatilis_contig10306:64..1151622929074.0566108-UTR-H-fluviatilis_contig10306:64..115Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10306 65..115 +
1691135172.8110175-UTR-H-fluviatilis_contig10306:64..1151691135172.8110175-UTR-H-fluviatilis_contig10306:64..115Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10306 65..115 +
1622929074.0823436-UTR-H-fluviatilis_contig10306:427..5001622929074.0823436-UTR-H-fluviatilis_contig10306:427..500Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10306 428..500 +
1691135172.834126-UTR-H-fluviatilis_contig10306:427..5001691135172.834126-UTR-H-fluviatilis_contig10306:427..500Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10306 428..500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.0705981-CDS-H-fluviatilis_contig10306:115..4271622929074.0705981-CDS-H-fluviatilis_contig10306:115..427Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10306 116..427 +
1691135172.8214638-CDS-H-fluviatilis_contig10306:115..4271691135172.8214638-CDS-H-fluviatilis_contig10306:115..427Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10306 116..427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10306.638.1

>prot_H-fluviatilis_contig10306.638.1 ID=prot_H-fluviatilis_contig10306.638.1|Name=mRNA_H-fluviatilis_contig10306.638.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=104bp
MSTPTPKPVLTPTPKPVSTPTPKPVSTPTPKPVSTPTPKPVPTPMPEPGC
GEEVAAFHQCAGDGYEGSGCCRMGYDCTALSDCYSEVVAKFCFVFRCFTT
GVV*
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mRNA from alignment at H-fluviatilis_contig10306:65..500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10306.638.1 ID=mRNA_H-fluviatilis_contig10306.638.1|Name=mRNA_H-fluviatilis_contig10306.638.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=436bp|location=Sequence derived from alignment at H-fluviatilis_contig10306:65..500+ (Heribaudiella fluviatilis SAG_13_90)
CCTGTGTTGACCCCCACGCCCAAGCCTGTGTCGACGCCCACGCCTAAGCC
TATGTCGACGCCCACACCCAAGCCTGTGTTGACGCCCACGCCTAAACCTG
TGTCGACCCCCACGCCTAAGCCTGTGTCGACGCCCACGCCTAAGCCTGTG
TCGACCCCCACGCCTAAGCCTGTGCCGACGCCCATGCCTGAGCCCGGTTG
TGGCGAAGAAGTGGCTGCGTTCCATCAGTGTGCAGGGGATGGGTACGAAG
GGTCTGGCTGCTGCAGGATGGGCTACGACTGCACGGCGCTGTCGGATTGC
TACTCTGAGGTGGTTGCGAAGTTTTGCTTTGTTTTTCGTTGCTTTACAAC
TGGCGTGGTGTAACTTTGTCATCATGTGCGAGAATAGTCAGGTTATCGCA
CGTTGGCCGCCGTAGCTTGCCCTGTCTATCGGCATC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10306:65..500+

>mRNA_H-fluviatilis_contig10306.638.1 ID=mRNA_H-fluviatilis_contig10306.638.1|Name=mRNA_H-fluviatilis_contig10306.638.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=624bp|location=Sequence derived from alignment at H-fluviatilis_contig10306:65..500+ (Heribaudiella fluviatilis SAG_13_90)
ATGTCGACGCCCACACCCAAGCCTGTGTTGACGCCCACGCCTAAACCTGT
GTCGACCCCCACGCCTAAGCCTGTGTCGACGCCCACGCCTAAGCCTGTGT
CGACCCCCACGCCTAAGCCTGTGCCGACGCCCATGCCTGAGCCCGGTTGT
GGCGAAGAAGTGGCTGCGTTCCATCAGTGTGCAGGGGATGGGTACGAAGG
GTCTGGCTGCTGCAGGATGGGCTACGACTGCACGGCGCTGTCGGATTGCT
ACTCTGAGGTGGTTGCGAAGTTTTGCTTTGTTTTTCGTTGCTTTACAACT
GGCGTGGTGTAAATGTCGACGCCCACACCCAAGCCTGTGTTGACGCCCAC
GCCTAAACCTGTGTCGACCCCCACGCCTAAGCCTGTGTCGACGCCCACGC
CTAAGCCTGTGTCGACCCCCACGCCTAAGCCTGTGCCGACGCCCATGCCT
GAGCCCGGTTGTGGCGAAGAAGTGGCTGCGTTCCATCAGTGTGCAGGGGA
TGGGTACGAAGGGTCTGGCTGCTGCAGGATGGGCTACGACTGCACGGCGC
TGTCGGATTGCTACTCTGAGGTGGTTGCGAAGTTTTGCTTTGTTTTTCGT
TGCTTTACAACTGGCGTGGTGTAA
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